Wall clock time and date at job start Tue Mar 31 2020 18:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08998 * 111.10614 * 275.55050 * 14 13 11 16 16 N 1.46497 * 111.14613 * 151.44474 * 14 13 11 17 17 C 1.34778 * 120.00350 * 161.86595 * 16 14 13 18 18 O 1.21284 * 119.99599 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.99995 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.38222 * 120.01312 * 99.99913 * 20 19 17 22 22 C 1.38216 * 120.02773 * 179.97438 * 21 20 19 23 23 C 1.38272 * 120.05098 * 0.02562 * 22 21 20 24 24 C 1.38176 * 120.02569 * 0.02562 * 23 22 21 25 25 C 1.38436 * 120.01392 * 279.72013 * 20 19 17 26 26 F 1.35102 * 120.02486 * 0.02562 * 25 20 19 27 27 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 28 28 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 31 31 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 32 32 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 33 33 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 34 34 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 35 35 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 36 36 H 0.97005 * 119.99741 * 341.87284 * 16 14 13 37 37 H 1.08994 * 109.47071 * 299.99930 * 19 17 16 38 38 H 1.08996 * 109.47504 * 59.99901 * 19 17 16 39 39 H 1.08005 * 119.98329 * 359.95943 * 21 20 19 40 40 H 1.07996 * 119.97880 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.98616 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.01229 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.29717 * 205.04797 * 27 14 13 44 44 H 1.08999 * 110.30468 * 82.90213 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -2.1715 -5.1706 -1.4944 16 7 -1.4723 -7.1670 -1.5455 17 6 -2.4628 -7.6495 -2.3218 18 8 -3.1552 -6.8885 -2.9639 19 6 -2.7100 -9.1344 -2.3918 20 6 -3.8632 -9.4083 -3.3224 21 6 -3.6220 -9.8200 -4.6197 22 6 -4.6795 -10.0718 -5.4733 23 6 -5.9797 -9.9117 -5.0310 24 6 -6.2233 -9.4992 -3.7349 25 6 -5.1646 -9.2533 -2.8767 26 9 -5.4017 -8.8559 -1.6074 27 6 -0.2902 -5.2595 -2.6173 28 8 0.3472 -4.0694 -2.1188 29 1 -0.4850 0.8401 0.0004 30 1 -0.4939 -2.9498 0.9979 31 1 -0.7253 -2.1588 -0.6202 32 1 2.5430 -4.0459 -0.6424 33 1 1.7598 -4.2501 0.9826 34 1 0.3211 -6.1464 0.0146 35 1 -1.0313 -5.1386 0.6288 36 1 -0.9183 -7.7757 -1.0321 37 1 -1.8161 -9.6343 -2.7646 38 1 -2.9483 -9.5104 -1.3969 39 1 -2.6068 -9.9447 -4.9665 40 1 -4.4902 -10.3938 -6.4866 41 1 -6.8052 -10.1083 -5.6990 42 1 -7.2389 -9.3739 -3.3897 43 1 -0.8659 -5.0327 -3.5146 44 1 0.4543 -6.0270 -2.8286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053999931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:38 Heat of formation + Delta-G solvation = -30.918081 kcal Electronic energy + Delta-G solvation = -28082.900327 eV Core-core repulsion = 23917.071491 eV Total energy + Delta-G solvation = -4165.828837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.11102 -40.44164 -39.64882 -38.75933 -36.30447 -34.50218 -33.33330 -32.09307 -30.87788 -30.55680 -28.46132 -27.48073 -25.67180 -24.73483 -23.16525 -22.84822 -21.94271 -21.24146 -20.58732 -19.03457 -17.90591 -17.42923 -16.81731 -16.70635 -16.58936 -15.98294 -15.70313 -15.35096 -15.11113 -14.92360 -14.55223 -14.45615 -14.15465 -13.66862 -13.62447 -13.42805 -13.35323 -13.13120 -13.04787 -12.57406 -12.49307 -11.97196 -11.92183 -11.78088 -11.49201 -11.36074 -11.16636 -11.04322 -10.77900 -10.48072 -10.20683 -10.06735 -9.83471 -9.44869 -9.28619 -9.13605 -8.93701 -8.78999 -8.61456 -6.83679 -5.69888 -3.02027 0.82176 0.90350 2.46612 2.89232 3.34644 3.44724 3.48085 3.49961 3.98937 4.14627 4.21597 4.37660 4.46833 4.52599 4.60963 4.75641 4.80547 4.97485 5.02147 5.04258 5.07058 5.13917 5.27051 5.30756 5.44704 5.51741 5.65700 5.71658 5.81914 5.85616 5.90593 5.96499 6.00617 6.06586 6.08202 6.32061 6.39963 6.55841 6.56877 6.63967 6.95581 7.25070 7.31886 7.57018 7.80857 8.04557 8.06588 9.09335 9.76449 10.68621 11.47871 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.002105 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.717061 B =13298.023020 C =13432.079045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.058 3.942 12 C 0.112 3.888 13 C -0.141 4.141 14 C 0.112 3.888 15 H 0.106 0.894 16 N -0.718 5.718 17 C 0.514 3.486 18 O -0.526 6.526 19 C -0.102 4.102 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.154 4.154 25 C 0.116 3.884 26 F -0.136 7.136 27 C 0.042 3.958 28 O -0.332 6.332 29 H 0.254 0.746 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.401 0.599 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 -26.968 -6.642 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C 0.016 3.984 12 C -0.014 4.014 13 C -0.180 4.180 14 C 0.007 3.993 15 H 0.124 0.876 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.401 6.401 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.099 4.099 22 C -0.149 4.149 23 C -0.110 4.110 24 C -0.173 4.173 25 C 0.097 3.903 26 F -0.115 7.115 27 C -0.036 4.036 28 O -0.250 6.250 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.103 0.897 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.462 -25.807 -7.184 28.410 hybrid contribution 0.599 0.531 0.723 1.079 sum -8.862 -25.276 -6.461 27.553 Atomic orbital electron populations 1.69813 1.05022 1.25436 1.56410 1.24795 0.95705 0.97519 1.02481 0.86167 0.78431 0.83079 0.77884 1.21048 1.21550 1.21217 1.18846 0.90038 0.81331 1.44077 0.90160 1.45395 1.02405 0.99091 1.85886 1.22433 0.89527 0.89356 0.96036 1.23396 0.98267 0.95022 0.81709 1.22685 0.95000 0.87310 0.96443 1.23136 0.98763 0.98507 0.97624 1.22763 1.00161 0.80597 0.95732 0.87586 1.45872 1.35107 1.07962 1.48131 1.20460 0.79987 0.90364 0.79219 1.90764 1.46886 1.59394 1.43041 1.20597 0.98283 0.94115 1.01227 1.19321 0.92241 1.02856 0.95840 1.20918 0.99854 0.97408 0.91674 1.21172 0.92482 1.01168 1.00070 1.21023 0.97334 0.97777 0.94820 1.21139 0.98692 1.03081 0.94407 1.17515 0.93477 0.99434 0.79869 1.91502 1.95226 1.88159 1.36604 1.23745 0.94276 0.88441 0.97178 1.88487 1.78627 1.39332 1.18523 0.93600 0.94568 0.90299 0.93633 0.93970 0.90235 0.89162 0.76399 0.87268 0.87539 0.85052 0.85262 0.85063 0.84735 0.89704 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.38 11.51 55.49 0.64 -27.74 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.32 10.74 -15.06 -0.16 -6.48 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -16.24 3.78 -184.57 -0.70 -16.94 16 10 C 0.15 3.72 6.89 -7.92 -0.05 3.67 16 11 C 0.06 1.12 1.75 -90.45 -0.16 0.97 16 12 C 0.11 2.37 8.20 -8.06 -0.07 2.31 16 13 C -0.14 -1.96 6.03 -25.07 -0.15 -2.11 16 14 C 0.11 1.55 3.37 -65.54 -0.22 1.33 16 15 H 0.11 1.70 7.74 -51.93 -0.40 1.30 16 16 N -0.72 -7.33 5.24 -51.50 -0.27 -7.60 16 17 C 0.51 5.97 7.82 -10.99 -0.09 5.88 16 18 O -0.53 -8.56 15.71 5.55 0.09 -8.47 16 19 C -0.10 -0.80 5.56 -29.04 -0.16 -0.96 16 20 C -0.10 -0.97 4.43 -104.55 -0.46 -1.43 16 21 C -0.08 -0.64 9.67 -39.60 -0.38 -1.02 16 22 C -0.13 -0.93 10.04 -39.58 -0.40 -1.33 16 23 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 24 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 25 C 0.12 1.25 7.14 -39.42 -0.28 0.97 16 26 F -0.14 -1.65 16.66 2.25 0.04 -1.61 16 27 C 0.04 0.66 7.49 38.23 0.29 0.94 16 28 O -0.33 -6.92 11.18 -35.23 -0.39 -7.31 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 31 H 0.08 2.20 7.13 -51.93 -0.37 1.83 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 35 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16 36 H 0.40 2.71 8.51 -40.82 -0.35 2.36 16 37 H 0.11 0.51 8.00 -51.93 -0.42 0.10 16 38 H 0.11 0.67 7.94 -51.93 -0.41 0.26 16 39 H 0.13 0.76 8.04 -52.48 -0.42 0.33 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -37.30 373.60 -9.29 -46.58 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.11 Total: 0.07 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.19 Total: -0.46 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.33 Total: -52.29 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.31 Total: -15.78 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.30 -9.29 -46.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053999931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.665 kcal (2) G-P(sol) polarization free energy of solvation -37.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds