Wall clock time and date at job start Tue Mar 31 2020 18:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08998 * 111.10614 * 275.55050 * 14 13 11 16 16 N 1.46497 * 111.14613 * 151.44474 * 14 13 11 17 17 C 1.34778 * 120.00350 * 161.86595 * 16 14 13 18 18 O 1.21284 * 119.99599 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.99995 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.38222 * 120.01312 * 99.99913 * 20 19 17 22 22 C 1.38216 * 120.02773 * 179.97438 * 21 20 19 23 23 C 1.38272 * 120.05098 * 0.02562 * 22 21 20 24 24 C 1.38176 * 120.02569 * 0.02562 * 23 22 21 25 25 C 1.38436 * 120.01392 * 279.72013 * 20 19 17 26 26 F 1.35102 * 120.02486 * 0.02562 * 25 20 19 27 27 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 28 28 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 31 31 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 32 32 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 33 33 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 34 34 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 35 35 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 36 36 H 0.97005 * 119.99741 * 341.87284 * 16 14 13 37 37 H 1.08994 * 109.47071 * 299.99930 * 19 17 16 38 38 H 1.08996 * 109.47504 * 59.99901 * 19 17 16 39 39 H 1.08005 * 119.98329 * 359.95943 * 21 20 19 40 40 H 1.07996 * 119.97880 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.98616 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.01229 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.29717 * 205.04797 * 27 14 13 44 44 H 1.08999 * 110.30468 * 82.90213 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -2.1715 -5.1706 -1.4944 16 7 -1.4723 -7.1670 -1.5455 17 6 -2.4628 -7.6495 -2.3218 18 8 -3.1552 -6.8885 -2.9639 19 6 -2.7100 -9.1344 -2.3918 20 6 -3.8632 -9.4083 -3.3224 21 6 -3.6220 -9.8200 -4.6197 22 6 -4.6795 -10.0718 -5.4733 23 6 -5.9797 -9.9117 -5.0310 24 6 -6.2233 -9.4992 -3.7349 25 6 -5.1646 -9.2533 -2.8767 26 9 -5.4017 -8.8559 -1.6074 27 6 -0.2902 -5.2595 -2.6173 28 8 0.3472 -4.0694 -2.1188 29 1 -0.4850 0.8401 0.0004 30 1 -0.4939 -2.9498 0.9979 31 1 -0.7253 -2.1588 -0.6202 32 1 2.5430 -4.0459 -0.6424 33 1 1.7598 -4.2501 0.9826 34 1 0.3211 -6.1464 0.0146 35 1 -1.0313 -5.1386 0.6288 36 1 -0.9183 -7.7757 -1.0321 37 1 -1.8161 -9.6343 -2.7646 38 1 -2.9483 -9.5104 -1.3969 39 1 -2.6068 -9.9447 -4.9665 40 1 -4.4902 -10.3938 -6.4866 41 1 -6.8052 -10.1083 -5.6990 42 1 -7.2389 -9.3739 -3.3897 43 1 -0.8659 -5.0327 -3.5146 44 1 0.4543 -6.0270 -2.8286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053999931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:37 Heat of formation + Delta-G solvation = -57.466453 kcal Electronic energy + Delta-G solvation = -28084.051551 eV Core-core repulsion = 23917.071491 eV Total energy + Delta-G solvation = -4166.980061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89908 -41.66442 -40.72602 -39.55664 -37.91308 -35.67920 -34.20123 -33.99795 -31.83002 -31.40639 -30.01660 -28.39653 -27.33822 -26.53934 -24.11954 -23.71965 -23.34807 -22.31565 -21.52435 -20.59884 -18.81074 -18.58204 -18.24526 -17.68062 -17.45299 -17.13111 -16.73344 -16.54751 -16.33052 -16.26374 -15.98270 -15.54159 -15.18295 -15.04783 -14.91281 -14.73431 -14.45576 -14.18189 -14.14393 -13.57596 -13.45166 -13.19987 -13.12210 -13.04894 -12.78301 -12.76329 -12.57228 -12.39778 -12.29932 -11.94243 -11.76190 -11.66972 -11.35425 -11.04880 -10.93497 -10.32292 -10.10148 -9.88274 -9.58009 -8.94660 -7.91226 -5.24526 0.20565 0.29790 1.42422 1.47762 1.53618 1.59256 2.02532 2.46456 2.69675 2.84063 3.27336 3.34034 3.36039 3.53734 3.58475 3.61214 3.74983 3.81510 3.94759 4.07020 4.10757 4.19873 4.32011 4.42902 4.55738 4.59463 4.64160 4.66218 4.73973 4.84065 4.87508 4.88407 4.97126 5.01943 5.13324 5.13871 5.24138 5.25773 5.39966 5.40863 5.48418 5.50095 5.91493 5.99222 6.29904 6.53488 6.88467 7.24516 7.58885 8.59132 9.26586 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.002105 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.717061 B =13298.023020 C =13432.079045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.074 4.074 3 Si 0.984 3.016 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.228 4.228 8 H 0.086 0.914 9 N -0.641 5.641 10 C 0.144 3.856 11 C 0.077 3.923 12 C 0.115 3.885 13 C -0.123 4.123 14 C 0.124 3.876 15 H 0.075 0.925 16 N -0.699 5.699 17 C 0.512 3.488 18 O -0.579 6.579 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.132 4.132 23 C -0.095 4.095 24 C -0.170 4.170 25 C 0.080 3.920 26 F -0.153 7.153 27 C 0.041 3.959 28 O -0.373 6.373 29 H 0.247 0.753 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.424 0.576 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.071 0.929 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 -30.044 -6.921 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.267 4.267 3 Si 0.812 3.188 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.356 4.356 8 H 0.104 0.896 9 N -0.367 5.367 10 C 0.018 3.982 11 C 0.035 3.965 12 C -0.010 4.010 13 C -0.162 4.162 14 C 0.018 3.982 15 H 0.093 0.907 16 N -0.353 5.353 17 C 0.300 3.700 18 O -0.458 6.458 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.106 4.106 22 C -0.150 4.150 23 C -0.112 4.112 24 C -0.189 4.189 25 C 0.061 3.939 26 F -0.132 7.132 27 C -0.037 4.037 28 O -0.291 6.291 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.263 0.737 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.089 0.911 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.870 -28.966 -7.438 30.923 hybrid contribution 0.083 1.416 0.712 1.588 sum -7.786 -27.549 -6.725 29.408 Atomic orbital electron populations 1.70040 1.06652 1.25625 1.58224 1.25736 0.96647 1.01211 1.03088 0.85069 0.77070 0.78313 0.78395 1.20329 1.22057 1.19712 1.19302 0.90715 0.82869 1.42739 0.89592 1.45809 1.03814 1.00851 1.86237 1.22475 0.88086 0.91549 0.96107 1.23033 0.97211 0.94987 0.81250 1.22900 0.95840 0.84076 0.98161 1.23054 0.99080 0.96660 0.97390 1.22331 0.98352 0.82533 0.94983 0.90674 1.45633 1.35166 1.06513 1.48031 1.21186 0.79034 0.91772 0.78053 1.90752 1.48737 1.61022 1.45294 1.20673 0.99392 0.91091 1.02191 1.19619 0.92212 1.03127 0.96947 1.21308 1.01387 0.96759 0.91114 1.21597 0.92197 0.99988 1.01217 1.21391 0.98579 0.96856 0.94416 1.21404 0.98866 1.03432 0.95167 1.17962 0.94904 1.01286 0.79749 1.91445 1.95412 1.88661 1.37704 1.23914 0.95099 0.87553 0.97137 1.88436 1.79149 1.42169 1.19363 0.94393 0.94158 0.95281 0.93254 0.90631 0.85711 0.88270 0.73738 0.83328 0.85881 0.82652 0.82577 0.82548 0.84106 0.91071 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.54 11.51 21.65 0.25 -61.30 16 2 C -0.07 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 48.04 29.55 68.60 2.03 50.06 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.23 -13.58 10.74 84.04 0.90 -12.68 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.64 -35.01 3.78 -738.92 -2.80 -37.81 16 10 C 0.14 7.24 6.89 83.48 0.58 7.81 16 11 C 0.08 2.93 1.75 -10.68 -0.02 2.91 16 12 C 0.12 4.68 8.20 83.39 0.68 5.36 16 13 C -0.12 -3.06 6.03 31.67 0.19 -2.87 16 14 C 0.12 3.24 3.37 46.54 0.16 3.40 16 15 H 0.08 2.47 7.74 -2.39 -0.02 2.45 16 16 N -0.70 -12.24 5.24 -435.24 -2.28 -14.52 16 17 C 0.51 10.97 7.82 87.66 0.69 11.65 16 18 O -0.58 -18.93 15.71 -3.04 -0.05 -18.98 16 19 C -0.09 -1.21 5.56 29.10 0.16 -1.05 16 20 C -0.12 -2.07 4.43 -19.82 -0.09 -2.16 16 21 C -0.09 -1.19 9.67 22.26 0.22 -0.97 16 22 C -0.13 -1.57 10.04 22.27 0.22 -1.35 16 23 C -0.09 -1.24 10.04 22.26 0.22 -1.01 16 24 C -0.17 -3.01 10.03 22.31 0.22 -2.79 16 25 C 0.08 1.72 7.14 22.38 0.16 1.88 16 26 F -0.15 -3.82 16.66 44.97 0.75 -3.07 16 27 C 0.04 1.23 7.49 72.67 0.54 1.77 16 28 O -0.37 -15.56 11.18 -148.98 -1.67 -17.22 16 29 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 30 H 0.04 1.96 7.95 -2.39 -0.02 1.94 16 31 H 0.03 1.72 7.13 -2.39 -0.02 1.70 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.12 2.05 7.97 -2.38 -0.02 2.03 16 35 H 0.10 2.37 7.81 -2.39 -0.02 2.35 16 36 H 0.42 3.71 8.51 -92.70 -0.79 2.92 16 37 H 0.15 0.70 8.00 -2.39 -0.02 0.68 16 38 H 0.12 1.19 7.94 -2.39 -0.02 1.17 16 39 H 0.16 1.23 8.04 -2.91 -0.02 1.21 16 40 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -87.66 373.60 1.78 -85.88 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.24 Total: 11.06 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.31 Total: 5.88 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.83 Total: -113.62 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.71 Total: -36.20 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.75 Total: -3.07 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -87.66 1.78 -85.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053999931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.412 kcal (2) G-P(sol) polarization free energy of solvation -87.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds