Wall clock time and date at job start Tue Mar 31 2020 18:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99519 * 2 1 4 4 H 1.48501 * 109.47449 * 269.99866 * 3 2 1 5 5 H 1.48498 * 109.47239 * 30.00457 * 3 2 1 6 6 H 1.48506 * 109.46790 * 150.00424 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00430 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.47207 * 135.97404 * 359.63524 * 9 7 2 11 11 C 1.52709 * 87.79745 * 153.79768 * 10 9 7 12 12 C 1.47216 * 135.97453 * 180.02562 * 9 7 2 13 13 C 1.53652 * 115.24462 * 140.76912 * 11 10 9 14 14 C 1.55489 * 101.96930 * 111.31018 * 13 11 10 15 15 H 1.08991 * 111.14131 * 151.44903 * 14 13 11 16 16 N 1.46498 * 111.10265 * 275.54275 * 14 13 11 17 17 C 1.34775 * 120.00205 * 198.11127 * 16 14 13 18 18 O 1.21558 * 119.99639 * 0.02562 * 17 16 14 19 19 C 1.47841 * 120.00353 * 179.97438 * 17 16 14 20 20 C 1.39579 * 120.14720 * 359.72691 * 19 17 16 21 21 C 1.37955 * 119.85284 * 179.78633 * 20 19 17 22 22 C 1.38352 * 120.14849 * 0.48959 * 21 20 19 23 23 C 1.50705 * 119.85662 * 179.76228 * 22 21 20 24 24 F 1.39893 * 109.47107 * 269.97848 * 23 22 21 25 25 C 1.38367 * 120.29224 * 359.74143 * 22 21 20 26 26 C 1.37958 * 120.14179 * 0.02562 * 25 22 21 27 27 C 1.55007 * 101.04245 * 33.48356 * 14 13 11 28 28 O 1.42391 * 116.11563 * 269.27635 * 11 10 9 29 29 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.50153 * 268.53354 * 10 9 7 31 31 H 1.08999 * 113.49942 * 39.06550 * 10 9 7 32 32 H 1.08999 * 113.49574 * 320.93154 * 12 9 7 33 33 H 1.09001 * 113.49833 * 91.40408 * 12 9 7 34 34 H 1.09000 * 110.93314 * 229.47863 * 13 11 10 35 35 H 1.09003 * 110.93393 * 353.13951 * 13 11 10 36 36 H 0.97008 * 120.00167 * 18.11234 * 16 14 13 37 37 H 1.08000 * 120.06912 * 359.97438 * 20 19 17 38 38 H 1.08003 * 119.92580 * 180.22804 * 21 20 19 39 39 H 1.08996 * 109.46507 * 29.98079 * 23 22 21 40 40 H 1.08997 * 109.46929 * 149.97734 * 23 22 21 41 41 H 1.07997 * 119.92720 * 179.97438 * 25 22 21 42 42 H 1.08003 * 120.07042 * 179.97438 * 26 25 22 43 43 H 1.09006 * 110.30603 * 205.05014 * 27 14 13 44 44 H 1.09000 * 110.38461 * 82.94773 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0895 -2.7932 0.0064 11 6 0.3398 -4.0910 -0.6743 12 6 1.6826 -3.8163 -0.0005 13 6 -0.3886 -5.3555 -0.1931 14 6 -1.2378 -5.7326 -1.4397 15 1 -1.4164 -6.8069 -1.4834 16 7 -2.5004 -4.9899 -1.4622 17 6 -3.5212 -5.4191 -2.2304 18 8 -3.3944 -6.4229 -2.9042 19 6 -4.7955 -4.6699 -2.2527 20 6 -4.9468 -3.5208 -1.4750 21 6 -6.1370 -2.8239 -1.5037 22 6 -7.1829 -3.2673 -2.2934 23 6 -8.4821 -2.5039 -2.3157 24 9 -9.3312 -2.9992 -1.3204 25 6 -7.0413 -4.4084 -3.0631 26 6 -5.8547 -5.1119 -3.0471 27 6 -0.3008 -5.2753 -2.5867 28 8 0.3385 -4.0821 -2.0982 29 1 -0.4850 0.8401 0.0004 30 1 -0.4944 -2.9409 1.0076 31 1 -0.7246 -2.1646 -0.6176 32 1 2.5408 -4.0498 -0.6305 33 1 1.7641 -4.2439 0.9988 34 1 0.3219 -6.1462 0.0478 35 1 -1.0282 -5.1350 0.6616 36 1 -2.6017 -4.1890 -0.9242 37 1 -4.1327 -3.1763 -0.8544 38 1 -6.2540 -1.9324 -0.9053 39 1 -8.2858 -1.4474 -2.1332 40 1 -8.9564 -2.6223 -3.2899 41 1 -7.8617 -4.7494 -3.6770 42 1 -5.7455 -6.0026 -3.6480 43 1 -0.8802 -5.0539 -3.4831 44 1 0.4431 -6.0434 -2.7983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054020174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:55 Heat of formation + Delta-G solvation = -36.251780 kcal Electronic energy + Delta-G solvation = -28462.323453 eV Core-core repulsion = 24296.263330 eV Total energy + Delta-G solvation = -4166.060123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.94179 -40.64552 -39.72614 -38.41770 -36.31404 -34.37790 -32.74655 -32.14820 -31.35012 -30.38754 -28.31029 -27.04699 -25.72645 -24.81588 -23.24675 -22.98843 -22.03283 -21.21777 -20.39936 -19.06481 -18.21024 -17.00571 -16.67872 -16.50204 -16.19879 -16.16180 -15.42374 -15.35182 -15.03959 -14.90582 -14.56810 -14.36762 -14.27119 -13.87738 -13.69875 -13.36833 -13.21324 -13.14938 -12.88079 -12.65060 -12.10404 -11.66559 -11.61087 -11.47725 -11.42850 -11.37834 -11.19990 -11.12023 -10.85229 -10.51293 -10.33291 -9.97962 -9.84281 -9.52704 -9.32460 -9.25753 -9.10533 -8.85117 -8.59213 -6.89618 -5.77662 -3.08510 0.50707 1.10497 2.65715 3.03461 3.39644 3.44208 3.45649 3.60708 4.08645 4.14183 4.31804 4.42857 4.49201 4.55380 4.63868 4.70373 4.79226 4.99480 5.03509 5.07714 5.21014 5.26314 5.28235 5.34153 5.42950 5.50584 5.56076 5.70528 5.79353 5.86115 5.90066 5.98692 6.00736 6.08297 6.13153 6.34816 6.42267 6.51557 6.56203 6.59223 6.86534 7.13892 7.42724 7.49324 7.76676 7.97418 8.10636 9.03071 9.70025 10.61870 11.40578 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.003180 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.533197 B = 8802.572782 C =10892.762243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.152 3.848 11 C 0.053 3.947 12 C 0.110 3.890 13 C -0.144 4.144 14 C 0.112 3.888 15 H 0.105 0.895 16 N -0.706 5.706 17 C 0.560 3.440 18 O -0.541 6.541 19 C -0.123 4.123 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.115 4.115 23 C 0.104 3.896 24 F -0.211 7.211 25 C -0.108 4.108 26 C -0.063 4.063 27 C 0.039 3.961 28 O -0.334 6.334 29 H 0.253 0.747 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.407 0.593 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -10.465 -3.548 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.026 3.974 11 C 0.011 3.989 12 C -0.016 4.016 13 C -0.183 4.183 14 C 0.007 3.993 15 H 0.123 0.877 16 N -0.358 5.358 17 C 0.348 3.652 18 O -0.420 6.420 19 C -0.126 4.126 20 C -0.100 4.100 21 C -0.120 4.120 22 C -0.116 4.116 23 C 0.049 3.951 24 F -0.192 7.192 25 C -0.126 4.126 26 C -0.082 4.082 27 C -0.039 4.039 28 O -0.252 6.252 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.244 0.756 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.101 0.899 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.444 -10.634 -4.114 18.402 hybrid contribution 0.398 1.181 0.524 1.352 sum -14.046 -9.453 -3.590 17.307 Atomic orbital electron populations 1.69807 1.05017 1.25233 1.56834 1.24751 0.95710 0.97444 1.02489 0.86102 0.78559 0.83340 0.77658 1.21500 1.21647 1.20693 1.18913 0.90126 0.81336 1.43666 0.90108 1.45367 1.02278 0.99163 1.85827 1.22367 0.89776 0.89319 0.95940 1.23448 0.98386 0.95204 0.81819 1.22713 0.95208 0.87138 0.96568 1.23234 0.98840 0.98866 0.97380 1.22597 0.83407 0.97239 0.96072 0.87708 1.45842 1.12862 1.30317 1.46780 1.18246 0.83397 0.84228 0.79355 1.90756 1.82984 1.25733 1.42495 1.20042 0.94796 0.97138 1.00583 1.21450 0.97905 0.93507 0.97175 1.21048 0.92477 1.00163 0.98303 1.20450 0.96028 0.96885 0.98254 1.20854 0.86151 0.97735 0.90332 1.92819 1.72172 1.89871 1.64295 1.21016 0.97734 0.94603 0.99296 1.21255 0.91387 0.99165 0.96356 1.23845 0.94331 0.88660 0.97052 1.88467 1.78853 1.39491 1.18430 0.93751 0.94809 0.90550 0.93550 0.93915 0.88927 0.89232 0.75646 0.84693 0.84791 0.89471 0.89665 0.85108 0.84320 0.89888 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 11.51 55.49 0.64 -26.35 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.21 -6.06 10.74 -15.06 -0.16 -6.22 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.54 3.79 -184.77 -0.70 -16.24 16 10 C 0.15 3.43 6.87 -8.07 -0.06 3.37 16 11 C 0.05 0.97 1.74 -90.58 -0.16 0.81 16 12 C 0.11 2.26 8.21 -8.06 -0.07 2.19 16 13 C -0.14 -1.91 5.97 -25.07 -0.15 -2.06 16 14 C 0.11 1.48 3.37 -65.55 -0.22 1.26 16 15 H 0.11 1.29 7.74 -51.93 -0.40 0.89 16 16 N -0.71 -9.35 5.19 -52.45 -0.27 -9.62 16 17 C 0.56 7.83 7.77 -12.33 -0.10 7.74 16 18 O -0.54 -8.86 16.10 5.31 0.09 -8.77 16 19 C -0.12 -1.50 5.87 -104.97 -0.62 -2.11 16 20 C -0.08 -0.90 9.54 -39.19 -0.37 -1.28 16 21 C -0.10 -1.01 9.68 -39.64 -0.38 -1.39 16 22 C -0.12 -1.06 5.60 -104.53 -0.59 -1.64 16 23 C 0.10 0.74 7.67 36.01 0.28 1.01 16 24 F -0.21 -2.10 17.34 2.25 0.04 -2.06 16 25 C -0.11 -0.99 9.68 -39.64 -0.38 -1.37 16 26 C -0.06 -0.69 9.60 -39.18 -0.38 -1.06 16 27 C 0.04 0.59 7.49 38.22 0.29 0.88 16 28 O -0.33 -6.61 11.17 -35.23 -0.39 -7.01 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 31 H 0.08 1.94 7.15 -51.93 -0.37 1.57 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 36 H 0.41 5.16 6.66 -40.82 -0.27 4.89 16 37 H 0.14 1.39 6.41 -52.49 -0.34 1.06 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.14 1.46 7.65 -52.48 -0.40 1.06 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -34.70 371.74 -9.13 -43.83 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.94 Total: 3.61 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.16 Total: -0.18 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.33 Total: -52.21 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.31 Total: -15.78 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.70 -9.13 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054020174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.575 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds