Wall clock time and date at job start Tue Mar 31 2020 18:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99519 * 2 1 4 4 H 1.48501 * 109.47449 * 269.99866 * 3 2 1 5 5 H 1.48498 * 109.47239 * 30.00457 * 3 2 1 6 6 H 1.48506 * 109.46790 * 150.00424 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00430 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.47207 * 135.97404 * 359.63524 * 9 7 2 11 11 C 1.52709 * 87.79745 * 153.79768 * 10 9 7 12 12 C 1.47216 * 135.97453 * 180.02562 * 9 7 2 13 13 C 1.53652 * 115.24462 * 140.76912 * 11 10 9 14 14 C 1.55489 * 101.96930 * 111.31018 * 13 11 10 15 15 H 1.08991 * 111.14131 * 151.44903 * 14 13 11 16 16 N 1.46498 * 111.10265 * 275.54275 * 14 13 11 17 17 C 1.34775 * 120.00205 * 198.11127 * 16 14 13 18 18 O 1.21558 * 119.99639 * 0.02562 * 17 16 14 19 19 C 1.47841 * 120.00353 * 179.97438 * 17 16 14 20 20 C 1.39579 * 120.14720 * 359.72691 * 19 17 16 21 21 C 1.37955 * 119.85284 * 179.78633 * 20 19 17 22 22 C 1.38352 * 120.14849 * 0.48959 * 21 20 19 23 23 C 1.50705 * 119.85662 * 179.76228 * 22 21 20 24 24 F 1.39893 * 109.47107 * 269.97848 * 23 22 21 25 25 C 1.38367 * 120.29224 * 359.74143 * 22 21 20 26 26 C 1.37958 * 120.14179 * 0.02562 * 25 22 21 27 27 C 1.55007 * 101.04245 * 33.48356 * 14 13 11 28 28 O 1.42391 * 116.11563 * 269.27635 * 11 10 9 29 29 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.50153 * 268.53354 * 10 9 7 31 31 H 1.08999 * 113.49942 * 39.06550 * 10 9 7 32 32 H 1.08999 * 113.49574 * 320.93154 * 12 9 7 33 33 H 1.09001 * 113.49833 * 91.40408 * 12 9 7 34 34 H 1.09000 * 110.93314 * 229.47863 * 13 11 10 35 35 H 1.09003 * 110.93393 * 353.13951 * 13 11 10 36 36 H 0.97008 * 120.00167 * 18.11234 * 16 14 13 37 37 H 1.08000 * 120.06912 * 359.97438 * 20 19 17 38 38 H 1.08003 * 119.92580 * 180.22804 * 21 20 19 39 39 H 1.08996 * 109.46507 * 29.98079 * 23 22 21 40 40 H 1.08997 * 109.46929 * 149.97734 * 23 22 21 41 41 H 1.07997 * 119.92720 * 179.97438 * 25 22 21 42 42 H 1.08003 * 120.07042 * 179.97438 * 26 25 22 43 43 H 1.09006 * 110.30603 * 205.05014 * 27 14 13 44 44 H 1.09000 * 110.38461 * 82.94773 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0895 -2.7932 0.0064 11 6 0.3398 -4.0910 -0.6743 12 6 1.6826 -3.8163 -0.0005 13 6 -0.3886 -5.3555 -0.1931 14 6 -1.2378 -5.7326 -1.4397 15 1 -1.4164 -6.8069 -1.4834 16 7 -2.5004 -4.9899 -1.4622 17 6 -3.5212 -5.4191 -2.2304 18 8 -3.3944 -6.4229 -2.9042 19 6 -4.7955 -4.6699 -2.2527 20 6 -4.9468 -3.5208 -1.4750 21 6 -6.1370 -2.8239 -1.5037 22 6 -7.1829 -3.2673 -2.2934 23 6 -8.4821 -2.5039 -2.3157 24 9 -9.3312 -2.9992 -1.3204 25 6 -7.0413 -4.4084 -3.0631 26 6 -5.8547 -5.1119 -3.0471 27 6 -0.3008 -5.2753 -2.5867 28 8 0.3385 -4.0821 -2.0982 29 1 -0.4850 0.8401 0.0004 30 1 -0.4944 -2.9409 1.0076 31 1 -0.7246 -2.1646 -0.6176 32 1 2.5408 -4.0498 -0.6305 33 1 1.7641 -4.2439 0.9988 34 1 0.3219 -6.1462 0.0478 35 1 -1.0282 -5.1350 0.6616 36 1 -2.6017 -4.1890 -0.9242 37 1 -4.1327 -3.1763 -0.8544 38 1 -6.2540 -1.9324 -0.9053 39 1 -8.2858 -1.4474 -2.1332 40 1 -8.9564 -2.6223 -3.2899 41 1 -7.8617 -4.7494 -3.6770 42 1 -5.7455 -6.0026 -3.6480 43 1 -0.8802 -5.0539 -3.4831 44 1 0.4431 -6.0434 -2.7983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054020174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:54 Heat of formation + Delta-G solvation = -59.247180 kcal Electronic energy + Delta-G solvation = -28463.320609 eV Core-core repulsion = 24296.263330 eV Total energy + Delta-G solvation = -4167.057279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.60357 -41.83827 -40.89788 -39.42357 -37.86782 -35.59056 -34.17598 -33.58521 -32.19315 -31.53204 -29.95037 -27.85574 -27.32934 -26.51909 -24.27983 -23.78267 -23.63576 -22.31542 -21.41388 -20.57773 -19.17562 -18.74500 -17.94365 -17.30005 -17.03858 -16.99854 -16.79649 -16.52742 -16.27796 -16.25175 -15.73484 -15.64820 -15.30754 -15.19784 -14.90884 -14.65227 -14.54883 -14.36461 -13.94661 -13.67981 -13.50790 -13.16386 -13.02447 -12.84130 -12.69666 -12.58125 -12.31515 -12.25559 -12.12809 -11.93629 -11.84088 -11.56054 -11.36681 -11.08926 -10.93345 -10.46835 -10.13549 -10.04832 -9.90337 -8.90946 -7.90273 -5.21667 -0.34193 0.31826 1.44372 1.46998 1.54761 1.68626 2.02126 2.46990 2.71971 2.81728 3.27696 3.34591 3.41922 3.59805 3.63951 3.67371 3.72733 3.78198 3.89965 4.02624 4.10200 4.12137 4.32687 4.35304 4.52110 4.64751 4.66773 4.67511 4.74284 4.76323 4.80901 4.89616 4.90766 4.96091 5.01333 5.15706 5.18483 5.24650 5.28084 5.37212 5.40482 5.50432 5.79162 5.94313 6.32199 6.39571 6.92365 7.03538 7.60555 8.61162 9.27583 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.003180 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.533197 B = 8802.572782 C =10892.762243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.640 5.640 10 C 0.151 3.849 11 C 0.074 3.926 12 C 0.108 3.892 13 C -0.128 4.128 14 C 0.118 3.882 15 H 0.124 0.876 16 N -0.706 5.706 17 C 0.560 3.440 18 O -0.570 6.570 19 C -0.143 4.143 20 C -0.091 4.091 21 C -0.110 4.110 22 C -0.114 4.114 23 C 0.101 3.899 24 F -0.227 7.227 25 C -0.105 4.105 26 C -0.072 4.072 27 C 0.036 3.964 28 O -0.372 6.372 29 H 0.248 0.752 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.408 0.592 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.071 0.929 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.419 -11.334 -3.319 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.366 5.366 10 C 0.025 3.975 11 C 0.033 3.967 12 C -0.017 4.017 13 C -0.167 4.167 14 C 0.013 3.987 15 H 0.141 0.859 16 N -0.357 5.357 17 C 0.349 3.651 18 O -0.450 6.450 19 C -0.146 4.146 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.115 4.115 23 C 0.047 3.953 24 F -0.208 7.208 25 C -0.123 4.123 26 C -0.091 4.091 27 C -0.042 4.042 28 O -0.291 6.291 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.089 0.911 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.158 -11.534 -3.874 19.438 hybrid contribution 0.610 1.435 0.398 1.610 sum -14.548 -10.099 -3.476 18.048 Atomic orbital electron populations 1.69985 1.06247 1.25498 1.58096 1.25571 0.96661 1.00603 1.02982 0.85099 0.77761 0.79219 0.77370 1.21638 1.21637 1.19391 1.19276 0.90581 0.83017 1.42894 0.90208 1.45764 1.04068 1.00536 1.86194 1.22378 0.87972 0.91021 0.96107 1.23083 0.96928 0.95405 0.81321 1.22948 0.96248 0.84399 0.98104 1.23214 0.99054 0.96879 0.97515 1.22622 0.82929 0.98057 0.95110 0.85869 1.45900 1.12888 1.30311 1.46568 1.18530 0.83977 0.83897 0.78727 1.90727 1.83599 1.27009 1.43707 1.20034 0.94564 0.97886 1.02140 1.21515 0.98598 0.93529 0.97330 1.21318 0.92286 1.00577 0.98621 1.20775 0.96715 0.96773 0.97253 1.21100 0.84911 0.98192 0.91140 1.92787 1.72589 1.90165 1.65231 1.21341 0.97709 0.94104 0.99116 1.21393 0.91856 0.99535 0.96324 1.24031 0.95166 0.87783 0.97197 1.88427 1.79366 1.41972 1.19304 0.94282 0.94096 0.94422 0.93835 0.91032 0.85573 0.87697 0.75494 0.84810 0.83341 0.87707 0.86938 0.82294 0.84366 0.91071 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.15 11.51 21.65 0.25 -56.90 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.23 -13.25 10.74 84.03 0.90 -12.35 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.64 -33.42 3.79 -739.56 -2.80 -36.22 16 10 C 0.15 6.90 6.87 83.38 0.57 7.47 16 11 C 0.07 2.64 1.74 -10.76 -0.02 2.62 16 12 C 0.11 4.32 8.21 83.39 0.68 5.00 16 13 C -0.13 -3.04 5.97 31.67 0.19 -2.85 16 14 C 0.12 2.91 3.37 46.54 0.16 3.06 16 15 H 0.12 2.69 7.74 -2.39 -0.02 2.67 16 16 N -0.71 -18.41 5.19 -438.13 -2.27 -20.69 16 17 C 0.56 15.69 7.77 86.79 0.67 16.37 16 18 O -0.57 -18.61 16.10 -3.90 -0.06 -18.67 16 19 C -0.14 -3.52 5.87 -20.09 -0.12 -3.64 16 20 C -0.09 -2.03 9.54 22.53 0.21 -1.81 16 21 C -0.11 -2.09 9.68 22.23 0.22 -1.87 16 22 C -0.11 -1.90 5.60 -19.80 -0.11 -2.01 16 23 C 0.10 1.18 7.67 71.24 0.55 1.72 16 24 F -0.23 -4.07 17.34 44.97 0.78 -3.29 16 25 C -0.10 -1.74 9.68 22.23 0.22 -1.52 16 26 C -0.07 -1.54 9.60 22.53 0.22 -1.33 16 27 C 0.04 1.04 7.49 72.67 0.54 1.59 16 28 O -0.37 -14.68 11.17 -148.98 -1.66 -16.34 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 31 H 0.04 1.99 7.15 -2.39 -0.02 1.97 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 34 H 0.13 2.25 8.13 -2.39 -0.02 2.23 16 35 H 0.10 2.24 7.81 -2.39 -0.02 2.22 16 36 H 0.41 10.45 6.66 -92.70 -0.62 9.83 16 37 H 0.13 2.89 6.41 -2.91 -0.02 2.87 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.11 0.73 8.08 -2.39 -0.02 0.71 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.14 2.89 7.65 -2.91 -0.02 2.87 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -77.22 371.74 2.02 -75.20 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.41 Total: 21.38 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.35 Total: 7.16 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.83 Total: -113.81 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.73 Total: -35.02 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.22 2.02 -75.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054020174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.950 kcal (2) G-P(sol) polarization free energy of solvation -77.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds