Wall clock time and date at job start Tue Mar 31 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99730 * 2 1 4 4 H 1.48498 * 109.47185 * 274.98055 * 3 2 1 5 5 H 1.48499 * 109.47668 * 34.98049 * 3 2 1 6 6 H 1.48502 * 109.47142 * 154.98461 * 3 2 1 7 7 C 1.38807 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 187.05644 * 7 2 1 9 9 N 1.36941 * 120.00067 * 7.06393 * 7 2 1 10 10 C 1.47021 * 125.64752 * 354.77918 * 9 7 2 11 11 C 1.54322 * 107.26923 * 178.97933 * 10 9 7 12 12 H 1.09002 * 110.72198 * 96.17524 * 11 10 9 13 13 O 1.42900 * 110.72051 * 219.27036 * 11 10 9 14 14 C 1.55157 * 102.94579 * 337.81012 * 11 10 9 15 15 H 1.09000 * 111.00798 * 277.42879 * 14 11 10 16 16 N 1.46496 * 111.00634 * 153.57156 * 14 11 10 17 17 C 1.34776 * 120.00164 * 155.00016 * 16 14 11 18 18 O 1.21279 * 120.00046 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00150 * 180.02562 * 17 16 14 20 20 H 1.08998 * 110.26974 * 302.07263 * 19 17 16 21 21 C 1.54345 * 110.30359 * 180.02562 * 19 17 16 22 22 C 1.54343 * 102.39576 * 214.72046 * 21 19 17 23 23 C 1.51372 * 105.17123 * 26.35489 * 22 21 19 24 24 C 1.38459 * 130.36801 * 162.83038 * 23 22 21 25 25 C 1.38331 * 120.19632 * 179.97438 * 24 23 22 26 26 F 1.35099 * 120.05969 * 180.02562 * 25 24 23 27 27 C 1.38474 * 119.87730 * 0.02562 * 25 24 23 28 28 C 1.38064 * 119.91403 * 359.97438 * 27 25 24 29 29 C 1.38238 * 109.75630 * 342.80551 * 23 22 21 30 30 C 1.47426 * 125.64666 * 174.82916 * 9 7 2 31 31 H 0.96997 * 120.00106 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.87783 * 59.56662 * 10 9 7 33 33 H 1.08996 * 110.01276 * 298.47150 * 10 9 7 34 34 H 0.96698 * 113.99717 * 296.15478 * 13 11 10 35 35 H 0.96999 * 120.00411 * 335.00769 * 16 14 11 36 36 H 1.09002 * 110.82156 * 332.95089 * 21 19 17 37 37 H 1.09001 * 110.82292 * 96.30027 * 21 19 17 38 38 H 1.09002 * 110.30139 * 145.27748 * 22 21 19 39 39 H 1.08996 * 110.30411 * 267.43167 * 22 21 19 40 40 H 1.07997 * 119.90494 * 359.95088 * 24 23 22 41 41 H 1.08007 * 120.04563 * 179.97438 * 27 25 24 42 42 H 1.07995 * 119.87769 * 179.97438 * 28 27 25 43 43 H 1.08992 * 110.36716 * 322.93092 * 30 9 7 44 44 H 1.09004 * 110.36705 * 85.25476 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1154 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1283 -2.5324 -0.2012 11 6 -0.4287 -4.0334 -0.3967 12 1 -0.6374 -4.5127 0.5597 13 8 -1.5200 -4.2170 -1.3009 14 6 0.8911 -4.5756 -1.0061 15 1 0.9259 -4.4007 -2.0814 16 7 1.0646 -5.9981 -0.7017 17 6 1.8204 -6.7720 -1.5057 18 8 2.3572 -6.2907 -2.4809 19 6 1.9984 -8.2353 -1.1929 20 1 2.4272 -8.3595 -0.1986 21 6 2.9007 -8.9035 -2.2520 22 6 2.2902 -10.3166 -2.3635 23 6 0.8397 -10.1543 -1.9623 24 6 -0.2466 -10.9874 -2.1693 25 6 -1.4987 -10.6264 -1.7051 26 9 -2.5567 -11.4417 -1.9082 27 6 -1.6657 -9.4279 -1.0319 28 6 -0.5823 -8.5974 -0.8256 29 6 0.6719 -8.9583 -1.2896 30 6 1.9495 -3.7171 -0.2695 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5267 -1.9622 -1.0404 33 1 -0.5750 -2.1831 0.7296 34 1 -2.3597 -3.8591 -0.9816 35 1 0.6355 -6.3830 0.0784 36 1 2.8357 -8.3770 -3.2042 37 1 3.9336 -8.9505 -1.9069 38 1 2.3607 -10.6792 -3.3890 39 1 2.7962 -11.0019 -1.6835 40 1 -0.1162 -11.9217 -2.6951 41 1 -2.6421 -9.1432 -0.6686 42 1 -0.7132 -7.6626 -0.3008 43 1 2.8658 -3.6582 -0.8567 44 1 2.1560 -4.1333 0.7166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077398118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:27 Heat of formation + Delta-G solvation = -75.251331 kcal Electronic energy + Delta-G solvation = -28776.642199 eV Core-core repulsion = 24608.890928 eV Total energy + Delta-G solvation = -4167.751271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.13491 -40.92702 -39.19116 -37.84365 -35.54678 -35.07821 -34.13881 -32.16142 -31.44516 -29.06809 -28.76578 -27.91045 -26.84294 -24.46530 -23.27801 -22.31784 -21.41843 -20.63431 -20.29487 -19.94883 -17.59582 -17.40102 -17.04357 -16.79994 -16.52737 -16.33264 -15.80166 -15.68697 -14.86266 -14.79287 -14.47939 -14.22433 -14.04464 -13.84289 -13.51111 -13.19311 -13.10259 -12.73739 -12.68842 -12.53815 -12.20588 -12.08182 -11.85632 -11.76694 -11.49538 -11.28357 -11.17421 -11.03187 -10.92449 -10.83016 -10.18528 -9.94449 -9.89027 -9.87458 -9.36431 -9.22709 -8.86671 -8.69760 -8.63576 -6.94203 -5.80444 -3.13737 0.81482 0.92601 2.70645 3.14556 3.34111 3.38387 3.43781 3.44997 3.78559 4.15545 4.19088 4.41172 4.54202 4.59060 4.62289 4.76912 4.85754 4.91551 5.04643 5.19052 5.26184 5.33287 5.39655 5.41988 5.54720 5.57584 5.63762 5.68660 5.76722 5.79778 5.84368 5.97352 6.02991 6.05277 6.09850 6.20753 6.47730 6.57591 6.58538 6.84485 7.26981 7.45050 7.61707 7.71190 8.08257 8.14305 8.34048 9.11872 9.72334 10.35474 11.31748 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002748 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.818250 B =10186.836935 C =11276.388290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.152 3.848 11 C 0.068 3.932 12 H 0.056 0.944 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.106 0.894 16 N -0.714 5.714 17 C 0.522 3.478 18 O -0.531 6.531 19 C -0.069 4.069 20 H 0.115 0.885 21 C -0.105 4.105 22 C -0.082 4.082 23 C -0.060 4.060 24 C -0.144 4.144 25 C 0.101 3.899 26 F -0.140 7.140 27 C -0.150 4.150 28 C -0.069 4.069 29 C -0.101 4.101 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.395 0.605 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -23.096 -0.032 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.074 0.926 13 O -0.367 6.367 14 C 0.032 3.968 15 H 0.124 0.876 16 N -0.364 5.364 17 C 0.307 3.693 18 O -0.407 6.407 19 C -0.090 4.090 20 H 0.133 0.867 21 C -0.143 4.143 22 C -0.119 4.119 23 C -0.060 4.060 24 C -0.163 4.163 25 C 0.082 3.918 26 F -0.118 7.118 27 C -0.168 4.168 28 C -0.087 4.087 29 C -0.102 4.102 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.348 -22.816 -1.093 22.845 hybrid contribution -0.636 0.895 0.861 1.395 sum -0.984 -21.921 -0.232 21.944 Atomic orbital electron populations 1.69931 1.04984 1.25274 1.56661 1.24836 0.95760 0.97796 1.01813 0.86076 0.78680 0.83273 0.77609 1.21468 1.21726 1.20543 1.19083 0.91260 0.82233 1.43273 0.90113 1.44235 1.01176 1.01003 1.86326 1.21838 0.85538 0.88167 1.01793 1.23447 0.85995 0.99048 0.90678 0.92635 1.86471 1.20007 1.82921 1.47351 1.22284 0.94370 0.78235 1.01893 0.87637 1.46027 1.51269 1.10139 1.29013 1.20271 0.78446 0.87680 0.82872 1.90712 1.47565 1.74724 1.27741 1.20917 0.93686 0.91826 1.02595 0.86745 1.22292 0.98315 0.93742 0.99904 1.21131 0.90105 0.98246 1.02453 1.20365 0.95382 0.93746 0.96510 1.20506 0.90629 1.01536 1.03631 1.17518 0.83821 0.89984 1.00510 1.91503 1.55231 1.71795 1.93281 1.21030 1.00502 0.93656 1.01650 1.20557 0.90622 0.99124 0.98384 1.20280 0.93920 0.96007 0.99970 1.21851 0.95049 0.86319 0.96500 0.93623 0.91969 0.93512 0.77660 0.77062 0.88717 0.89666 0.89927 0.89507 0.84805 0.84278 0.84991 0.93117 0.95940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.36 55.49 0.57 -25.90 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.60 -15.12 3.39 -170.08 -0.58 -15.70 16 10 C 0.15 3.54 5.16 -3.07 -0.02 3.53 16 11 C 0.07 1.22 3.97 -24.90 -0.10 1.12 16 12 H 0.06 0.86 8.00 -51.93 -0.42 0.44 16 13 O -0.56 -9.47 13.39 -35.23 -0.47 -9.94 16 14 C 0.14 2.52 3.15 -65.78 -0.21 2.31 16 15 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 16 N -0.71 -10.07 4.65 -51.73 -0.24 -10.31 16 17 C 0.52 7.56 7.09 -10.99 -0.08 7.49 16 18 O -0.53 -9.89 15.13 5.56 0.08 -9.81 16 19 C -0.07 -0.71 3.26 -91.89 -0.30 -1.01 16 20 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 21 C -0.10 -0.98 6.35 -25.32 -0.16 -1.14 16 22 C -0.08 -0.62 6.77 -26.85 -0.18 -0.80 16 23 C -0.06 -0.57 6.14 -104.21 -0.64 -1.21 16 24 C -0.14 -1.35 10.02 -39.47 -0.40 -1.75 16 25 C 0.10 1.04 7.30 -39.46 -0.29 0.75 16 26 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 27 C -0.15 -1.48 10.03 -39.56 -0.40 -1.87 16 28 C -0.07 -0.69 9.52 -39.54 -0.38 -1.07 16 29 C -0.10 -1.04 5.60 -104.19 -0.58 -1.63 16 30 C 0.13 2.72 6.93 -2.53 -0.02 2.70 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.64 7.21 -51.93 -0.37 1.27 16 33 H 0.05 1.17 7.61 -51.93 -0.40 0.77 16 34 H 0.38 4.83 9.12 45.56 0.42 5.24 16 35 H 0.39 4.39 6.85 -40.82 -0.28 4.11 16 36 H 0.09 1.10 7.02 -51.93 -0.36 0.74 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.13 1.22 6.11 -52.49 -0.32 0.90 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -33.44 362.66 -9.19 -42.63 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.05 Total: 7.47 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.99 Total: 0.63 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.24 Total: -51.91 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.39 Total: -19.75 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -9.19 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077398118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.621 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds