Wall clock time and date at job start Tue Mar 31 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99730 * 2 1 4 4 H 1.48498 * 109.47185 * 274.98055 * 3 2 1 5 5 H 1.48499 * 109.47668 * 34.98049 * 3 2 1 6 6 H 1.48502 * 109.47142 * 154.98461 * 3 2 1 7 7 C 1.38807 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 187.05644 * 7 2 1 9 9 N 1.36941 * 120.00067 * 7.06393 * 7 2 1 10 10 C 1.47021 * 125.64752 * 354.77918 * 9 7 2 11 11 C 1.54322 * 107.26923 * 178.97933 * 10 9 7 12 12 H 1.09002 * 110.72198 * 96.17524 * 11 10 9 13 13 O 1.42900 * 110.72051 * 219.27036 * 11 10 9 14 14 C 1.55157 * 102.94579 * 337.81012 * 11 10 9 15 15 H 1.09000 * 111.00798 * 277.42879 * 14 11 10 16 16 N 1.46496 * 111.00634 * 153.57156 * 14 11 10 17 17 C 1.34776 * 120.00164 * 155.00016 * 16 14 11 18 18 O 1.21279 * 120.00046 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00150 * 180.02562 * 17 16 14 20 20 H 1.08998 * 110.26974 * 302.07263 * 19 17 16 21 21 C 1.54345 * 110.30359 * 180.02562 * 19 17 16 22 22 C 1.54343 * 102.39576 * 214.72046 * 21 19 17 23 23 C 1.51372 * 105.17123 * 26.35489 * 22 21 19 24 24 C 1.38459 * 130.36801 * 162.83038 * 23 22 21 25 25 C 1.38331 * 120.19632 * 179.97438 * 24 23 22 26 26 F 1.35099 * 120.05969 * 180.02562 * 25 24 23 27 27 C 1.38474 * 119.87730 * 0.02562 * 25 24 23 28 28 C 1.38064 * 119.91403 * 359.97438 * 27 25 24 29 29 C 1.38238 * 109.75630 * 342.80551 * 23 22 21 30 30 C 1.47426 * 125.64666 * 174.82916 * 9 7 2 31 31 H 0.96997 * 120.00106 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.87783 * 59.56662 * 10 9 7 33 33 H 1.08996 * 110.01276 * 298.47150 * 10 9 7 34 34 H 0.96698 * 113.99717 * 296.15478 * 13 11 10 35 35 H 0.96999 * 120.00411 * 335.00769 * 16 14 11 36 36 H 1.09002 * 110.82156 * 332.95089 * 21 19 17 37 37 H 1.09001 * 110.82292 * 96.30027 * 21 19 17 38 38 H 1.09002 * 110.30139 * 145.27748 * 22 21 19 39 39 H 1.08996 * 110.30411 * 267.43167 * 22 21 19 40 40 H 1.07997 * 119.90494 * 359.95088 * 24 23 22 41 41 H 1.08007 * 120.04563 * 179.97438 * 27 25 24 42 42 H 1.07995 * 119.87769 * 179.97438 * 28 27 25 43 43 H 1.08992 * 110.36716 * 322.93092 * 30 9 7 44 44 H 1.09004 * 110.36705 * 85.25476 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1154 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1283 -2.5324 -0.2012 11 6 -0.4287 -4.0334 -0.3967 12 1 -0.6374 -4.5127 0.5597 13 8 -1.5200 -4.2170 -1.3009 14 6 0.8911 -4.5756 -1.0061 15 1 0.9259 -4.4007 -2.0814 16 7 1.0646 -5.9981 -0.7017 17 6 1.8204 -6.7720 -1.5057 18 8 2.3572 -6.2907 -2.4809 19 6 1.9984 -8.2353 -1.1929 20 1 2.4272 -8.3595 -0.1986 21 6 2.9007 -8.9035 -2.2520 22 6 2.2902 -10.3166 -2.3635 23 6 0.8397 -10.1543 -1.9623 24 6 -0.2466 -10.9874 -2.1693 25 6 -1.4987 -10.6264 -1.7051 26 9 -2.5567 -11.4417 -1.9082 27 6 -1.6657 -9.4279 -1.0319 28 6 -0.5823 -8.5974 -0.8256 29 6 0.6719 -8.9583 -1.2896 30 6 1.9495 -3.7171 -0.2695 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5267 -1.9622 -1.0404 33 1 -0.5750 -2.1831 0.7296 34 1 -2.3597 -3.8591 -0.9816 35 1 0.6355 -6.3830 0.0784 36 1 2.8357 -8.3770 -3.2042 37 1 3.9336 -8.9505 -1.9069 38 1 2.3607 -10.6792 -3.3890 39 1 2.7962 -11.0019 -1.6835 40 1 -0.1162 -11.9217 -2.6951 41 1 -2.6421 -9.1432 -0.6686 42 1 -0.7132 -7.6626 -0.3008 43 1 2.8658 -3.6582 -0.8567 44 1 2.1560 -4.1333 0.7166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077398118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:26 Heat of formation + Delta-G solvation = -98.575131 kcal Electronic energy + Delta-G solvation = -28777.653595 eV Core-core repulsion = 24608.890928 eV Total energy + Delta-G solvation = -4168.762667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.91824 -41.84342 -40.38598 -39.26379 -36.68479 -36.31612 -35.58786 -33.74857 -32.54608 -30.33080 -29.76099 -29.20320 -28.27820 -26.30383 -24.00785 -23.38945 -22.33020 -22.19696 -21.73964 -21.04381 -19.12162 -18.52450 -18.15823 -18.08191 -17.46546 -17.33908 -17.08248 -16.59877 -16.47427 -15.93080 -15.72717 -15.52790 -15.17378 -15.04032 -14.53429 -14.48536 -14.23914 -14.15191 -13.90498 -13.73731 -13.45044 -13.22070 -13.17236 -12.84164 -12.80546 -12.76008 -12.56964 -12.47718 -12.08494 -11.90612 -11.87487 -11.72467 -11.53479 -11.17213 -10.84069 -10.76668 -10.17946 -9.92140 -9.46151 -8.97367 -7.91299 -5.26842 0.06205 0.22210 1.44690 1.47621 1.55601 1.57457 2.02158 2.46641 2.54473 3.06960 3.11871 3.29435 3.40077 3.44407 3.54573 3.67899 3.88847 3.93793 4.00715 4.05417 4.15277 4.19685 4.23308 4.36744 4.45059 4.54161 4.62734 4.65502 4.76620 4.82362 4.90636 4.99429 5.07084 5.11042 5.14814 5.26229 5.31387 5.34522 5.43736 5.47450 5.48489 5.65237 5.86666 6.12530 6.49570 6.85063 7.03472 7.21008 7.68421 8.30954 9.18936 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002748 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.818250 B =10186.836935 C =11276.388290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.160 3.840 11 C 0.091 3.909 12 H 0.095 0.905 13 O -0.569 6.569 14 C 0.153 3.847 15 H 0.069 0.931 16 N -0.700 5.700 17 C 0.519 3.481 18 O -0.577 6.577 19 C -0.059 4.059 20 H 0.146 0.854 21 C -0.107 4.107 22 C -0.074 4.074 23 C -0.063 4.063 24 C -0.146 4.146 25 C 0.086 3.914 26 F -0.146 7.146 27 C -0.156 4.156 28 C -0.077 4.077 29 C -0.114 4.114 30 C 0.131 3.869 31 H 0.249 0.751 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.395 0.605 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.034 0.966 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -25.267 0.951 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.034 3.966 11 C 0.031 3.969 12 H 0.113 0.887 13 O -0.376 6.376 14 C 0.046 3.954 15 H 0.088 0.912 16 N -0.352 5.352 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.080 4.080 20 H 0.163 0.837 21 C -0.144 4.144 22 C -0.111 4.111 23 C -0.063 4.063 24 C -0.165 4.165 25 C 0.067 3.933 26 F -0.125 7.125 27 C -0.175 4.175 28 C -0.095 4.095 29 C -0.115 4.115 30 C 0.005 3.995 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.246 0.754 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.053 0.947 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.213 -25.039 -0.080 25.040 hybrid contribution -0.824 1.542 0.516 1.823 sum -0.611 -23.497 0.435 23.509 Atomic orbital electron populations 1.70128 1.06177 1.25543 1.57547 1.25651 0.96693 1.00935 1.02070 0.85076 0.78003 0.79151 0.77206 1.21738 1.21687 1.19146 1.19435 0.91706 0.83633 1.42901 0.89995 1.44507 1.02268 1.01958 1.86263 1.21640 0.84467 0.91621 0.98902 1.23155 0.86181 0.95175 0.92382 0.88734 1.86439 1.20757 1.82762 1.47667 1.21725 0.93869 0.80436 0.99376 0.91243 1.45817 1.51400 1.08182 1.29801 1.21094 0.77105 0.89309 0.81819 1.90701 1.49283 1.75954 1.29686 1.20979 0.94338 0.88156 1.04498 0.83661 1.22317 0.99432 0.94443 0.98240 1.21160 0.88746 0.97429 1.03774 1.20613 0.96397 0.93393 0.95928 1.20718 0.90187 1.02254 1.03300 1.17743 0.84121 0.90279 1.01151 1.91486 1.55585 1.71986 1.93400 1.21211 1.01135 0.93555 1.01568 1.20682 0.90680 0.99472 0.98657 1.20381 0.93896 0.96526 1.00650 1.21949 0.94990 0.85125 0.97480 0.94148 0.96106 0.95726 0.75448 0.74825 0.91575 0.87777 0.88934 0.86861 0.83013 0.83095 0.84316 0.94713 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.82 10.36 21.65 0.22 -55.60 16 2 C -0.06 -3.40 5.48 84.86 0.46 -2.93 16 3 Si 0.98 45.70 29.56 68.60 2.03 47.73 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.25 -13.98 10.27 84.03 0.86 -13.12 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -31.95 3.39 -692.00 -2.35 -34.30 16 10 C 0.16 7.58 5.16 86.73 0.45 8.03 16 11 C 0.09 3.16 3.97 31.78 0.13 3.29 16 12 H 0.10 2.61 8.00 -2.39 -0.02 2.59 16 13 O -0.57 -18.50 13.39 -148.98 -2.00 -20.49 16 14 C 0.15 5.54 3.15 46.39 0.15 5.69 16 15 H 0.07 3.07 7.54 -2.39 -0.02 3.06 16 16 N -0.70 -18.56 4.65 -435.97 -2.03 -20.59 16 17 C 0.52 14.42 7.09 87.66 0.62 15.04 16 18 O -0.58 -21.67 15.13 -3.03 -0.05 -21.72 16 19 C -0.06 -1.07 3.26 -11.62 -0.04 -1.11 16 20 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 21 C -0.11 -1.75 6.35 31.51 0.20 -1.55 16 22 C -0.07 -0.88 6.77 30.52 0.21 -0.67 16 23 C -0.06 -1.03 6.14 -19.60 -0.12 -1.15 16 24 C -0.15 -2.41 10.02 22.34 0.22 -2.18 16 25 C 0.09 1.63 7.30 22.35 0.16 1.80 16 26 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 27 C -0.16 -2.80 10.03 22.28 0.22 -2.58 16 28 C -0.08 -1.38 9.52 22.29 0.21 -1.17 16 29 C -0.11 -2.07 5.60 -19.58 -0.11 -2.18 16 30 C 0.13 5.46 6.93 86.86 0.60 6.06 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.02 1.15 7.21 -2.39 -0.02 1.13 16 33 H 0.02 1.26 7.61 -2.39 -0.02 1.24 16 34 H 0.40 9.58 9.12 -74.06 -0.68 8.90 16 35 H 0.41 7.95 6.85 -92.71 -0.63 7.31 16 36 H 0.07 1.50 7.02 -2.39 -0.02 1.48 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.14 2.20 6.11 -2.91 -0.02 2.19 16 43 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.42 362.66 0.59 -74.83 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -0.25 Total: 21.06 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.23 Total: 11.27 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.15 Total: -110.49 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.04 Total: -42.21 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.42 0.59 -74.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077398118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.740 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds