Wall clock time and date at job start Tue Mar 31 2020 17:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21548 * 119.99879 * 359.97438 * 19 18 16 21 21 C 1.47849 * 120.00085 * 179.97438 * 19 18 16 22 22 C 1.39676 * 120.48826 * 359.72078 * 21 19 18 23 23 N 1.31738 * 120.87703 * 179.75175 * 22 21 19 24 24 C 1.31760 * 122.04117 * 0.53526 * 23 22 21 25 25 C 1.39631 * 120.88356 * 359.72924 * 24 23 22 26 26 C 1.47854 * 120.49173 * 179.97438 * 25 24 23 27 27 N 1.34775 * 119.99944 * 0.02633 * 26 25 24 28 28 O 1.21553 * 120.00101 * 180.02562 * 26 25 24 29 29 C 1.39727 * 120.49232 * 179.97438 * 21 19 18 30 30 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 31 31 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 32 32 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.07997 * 119.56587 * 0.02562 * 22 21 19 40 40 H 1.08004 * 119.55713 * 179.75020 * 24 23 22 41 41 H 0.97003 * 120.00067 * 359.97438 * 27 26 25 42 42 H 0.97000 * 120.00244 * 179.97438 * 27 26 25 43 43 H 1.07993 * 120.92454 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4551 0.5701 2.2439 21 6 4.4571 1.2341 4.2498 22 6 3.3463 1.8023 4.8778 23 7 3.3142 1.9558 6.1858 24 6 4.3199 1.5953 6.9568 25 6 5.4717 1.0240 6.4121 26 6 6.5954 0.6231 7.2854 27 7 6.5124 0.8077 8.6179 28 8 7.5941 0.1271 6.8016 29 6 5.5467 0.8368 5.0290 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 2.5007 2.1159 4.2836 40 1 4.2524 1.7433 8.0245 41 1 5.7156 1.2039 9.0039 42 1 7.2494 0.5444 9.1909 43 1 6.4227 0.3975 4.5752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082375114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:59 Heat of formation + Delta-G solvation = -71.861327 kcal Electronic energy + Delta-G solvation = -28233.851639 eV Core-core repulsion = 24086.167332 eV Total energy + Delta-G solvation = -4147.684308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06072 -40.96578 -39.98152 -39.38248 -37.52141 -35.81378 -35.04966 -33.94329 -33.70151 -32.47315 -30.52997 -28.89812 -27.54027 -26.47970 -26.03963 -25.06070 -23.08570 -22.37677 -21.96360 -21.28019 -19.78593 -19.06182 -18.48324 -18.16985 -17.95710 -17.76334 -17.22084 -16.78158 -16.38386 -16.28986 -15.98643 -15.89284 -15.76693 -15.52015 -15.15433 -14.92219 -14.68086 -14.48410 -14.35610 -13.95372 -13.82179 -13.63640 -13.19707 -13.02148 -12.76364 -12.59403 -12.34061 -12.01980 -11.93117 -11.88885 -11.54832 -11.34426 -11.20712 -10.82060 -10.81315 -10.68613 -10.59347 -10.46826 -10.20672 -8.97823 -7.81671 -5.28611 -0.74887 -0.32593 1.44004 1.47225 1.48775 1.58830 1.78359 1.89038 2.35385 2.44444 2.69094 2.72810 3.04270 3.29362 3.38490 3.53466 3.55544 3.59954 3.75884 3.87179 3.93097 3.96828 4.05816 4.21537 4.35638 4.45994 4.62064 4.68495 4.73658 4.77600 4.83366 4.89953 4.91576 5.17801 5.27357 5.35794 5.44676 5.68321 5.80113 6.18668 6.30916 6.30973 6.33640 6.53892 7.00978 7.04880 7.19534 7.68553 8.30570 9.19990 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002549 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.917087 B =10983.072566 C =11772.866495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.078 3.922 4 H 0.095 0.905 5 C 0.144 3.856 6 N -0.619 5.619 7 C -0.241 4.241 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.155 3.845 17 H 0.082 0.918 18 N -0.691 5.691 19 C 0.563 3.437 20 O -0.572 6.572 21 C -0.197 4.197 22 C 0.175 3.825 23 N -0.490 5.490 24 C 0.177 3.823 25 C -0.204 4.204 26 C 0.570 3.430 27 N -0.819 5.819 28 O -0.585 6.585 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.090 0.910 34 H -0.012 1.012 35 H 0.250 0.750 36 H 0.015 0.985 37 H 0.044 0.956 38 H 0.416 0.584 39 H 0.193 0.807 40 H 0.213 0.787 41 H 0.420 0.580 42 H 0.418 0.582 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -2.605 27.575 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.113 0.887 5 C 0.018 3.982 6 N -0.346 5.346 7 C -0.369 4.369 8 H 0.099 0.901 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.811 3.189 12 H -0.193 1.193 13 H -0.221 1.221 14 H -0.212 1.212 15 C 0.004 3.996 16 C 0.049 3.951 17 H 0.100 0.900 18 N -0.343 5.343 19 C 0.351 3.649 20 O -0.452 6.452 21 C -0.202 4.202 22 C 0.017 3.983 23 N -0.198 5.198 24 C 0.019 3.981 25 C -0.209 4.209 26 C 0.354 3.646 27 N -0.385 5.385 28 O -0.465 6.465 29 C 0.000 4.000 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.006 0.994 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.255 0.745 39 H 0.210 0.790 40 H 0.230 0.770 41 H 0.253 0.747 42 H 0.251 0.749 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.331 -2.957 26.962 27.224 hybrid contribution 0.700 0.421 -1.281 1.520 sum -1.631 -2.536 25.681 25.857 Atomic orbital electron populations 1.22986 0.79190 1.03896 1.00873 1.87840 1.21808 1.26721 1.95009 1.23661 0.92503 0.84970 0.97027 0.88683 1.22111 0.93863 0.90242 0.91976 1.44553 1.32854 1.32856 1.24362 1.19466 1.11301 1.04691 1.01489 0.90052 1.25632 0.98049 1.01729 1.00017 1.69981 1.20667 1.39956 1.28977 0.84948 0.77574 0.78286 0.78107 1.19323 1.22122 1.21177 1.21669 0.94210 0.95247 0.88456 1.21698 0.96131 0.98068 0.79242 0.90030 1.45587 1.19494 1.63047 1.06203 1.18345 0.82426 0.77292 0.86857 1.90810 1.34572 1.45753 1.74074 1.20742 0.98448 1.07977 0.93040 1.23609 0.95304 0.88081 0.91281 1.67910 1.28540 1.18042 1.05297 1.23870 0.85361 0.86706 1.02151 1.20912 0.98362 1.07808 0.93814 1.18024 0.85469 0.77330 0.83733 1.43474 1.24435 1.64843 1.05725 1.90865 1.33686 1.46111 1.75884 1.21814 0.96634 0.88708 0.92864 0.91727 0.94719 0.87933 0.89241 0.99396 0.94009 0.96694 0.93801 0.74474 0.79042 0.77020 0.74651 0.74918 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.89 113.37 1.23 1.90 16 2 O -0.40 -13.52 10.52 -148.98 -1.57 -15.08 16 3 C 0.08 2.83 3.11 32.08 0.10 2.93 16 4 H 0.10 2.94 7.76 -2.39 -0.02 2.92 16 5 C 0.14 7.06 5.63 86.86 0.49 7.55 16 6 N -0.62 -32.06 3.39 -691.97 -2.35 -34.41 16 7 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 10 N -0.95 -55.12 10.09 21.65 0.22 -54.91 16 11 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 15 C 0.13 5.69 6.98 86.73 0.61 6.29 16 16 C 0.15 5.66 2.99 46.27 0.14 5.80 16 17 H 0.08 3.41 7.70 -2.39 -0.02 3.39 16 18 N -0.69 -18.84 5.09 -439.38 -2.24 -21.07 16 19 C 0.56 16.83 7.78 86.79 0.67 17.51 16 20 O -0.57 -22.68 16.14 -3.87 -0.06 -22.74 16 21 C -0.20 -4.39 5.88 -20.03 -0.12 -4.50 16 22 C 0.17 2.70 10.71 85.05 0.91 3.61 16 23 N -0.49 -6.66 10.33 -193.69 -2.00 -8.66 16 24 C 0.18 1.75 10.71 85.04 0.91 2.66 16 25 C -0.20 -3.33 5.89 -20.02 -0.12 -3.45 16 26 C 0.57 9.65 8.05 86.79 0.70 10.35 16 27 N -0.82 -4.37 8.83 -175.60 -1.55 -5.92 16 28 O -0.58 -16.35 17.25 -3.88 -0.07 -16.42 16 29 C 0.03 0.63 9.25 23.00 0.21 0.84 16 30 H 0.06 1.26 8.11 -2.39 -0.02 1.25 16 31 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 4.83 5.87 -2.39 -0.01 4.81 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 38 H 0.42 7.87 6.58 -92.71 -0.61 7.26 16 39 H 0.19 1.84 6.41 -2.91 -0.02 1.82 16 40 H 0.21 -0.17 6.41 -2.91 -0.02 -0.18 16 41 H 0.42 -1.12 6.89 -92.71 -0.64 -1.76 16 42 H 0.42 1.44 8.93 -92.71 -0.83 0.61 16 43 H 0.13 3.88 7.40 -2.91 -0.02 3.86 16 Total: -1.00 -84.25 364.92 -1.49 -85.74 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -0.97 Total: 10.38 kcal Atomic # 6 Polarization: 28.84 SS G_CDS: 7.07 Total: 35.91 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -7.92 Total: -124.97 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.70 Total: -54.24 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -84.25 -1.49 -85.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082375114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.879 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds