Wall clock time and date at job start Tue Mar 31 2020 17:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21526 * 119.99937 * 359.97438 * 19 18 16 21 21 C 1.48006 * 119.99838 * 180.02562 * 19 18 16 22 22 C 1.39870 * 120.45878 * 179.97438 * 21 19 18 23 23 C 1.38453 * 118.35563 * 180.02562 * 22 21 19 24 24 C 1.39304 * 119.18912 * 359.97438 * 23 22 21 25 25 C 1.48340 * 119.57050 * 180.02562 * 24 23 22 26 26 N 1.34769 * 119.99771 * 180.02562 * 25 24 23 27 27 O 1.21497 * 119.99809 * 0.02562 * 25 24 23 28 28 N 1.32716 * 120.85934 * 359.97438 * 24 23 22 29 29 C 1.31417 * 121.79648 * 359.74015 * 28 24 23 30 30 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.08000 * 120.82239 * 359.97438 * 22 21 19 40 40 H 1.07998 * 120.40716 * 179.97438 * 23 22 21 41 41 H 0.96998 * 120.00364 * 359.97438 * 26 25 24 42 42 H 0.97004 * 120.00142 * 179.97438 * 26 25 24 43 43 H 1.08009 * 119.63723 * 180.29335 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4549 0.5702 2.2440 21 6 4.4565 1.2333 4.2514 22 6 5.5477 0.8353 5.0308 23 6 5.4774 1.0163 6.4017 24 6 4.3317 1.5845 6.9541 25 6 4.2477 1.7828 8.4218 26 7 3.1432 2.3313 8.9654 27 8 5.1745 1.4507 9.1337 28 7 3.3149 1.9518 6.1843 29 6 3.3452 1.8019 4.8791 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 6.4230 0.3970 4.5747 40 1 6.3006 0.7205 7.0350 41 1 2.4034 2.5967 8.3970 42 1 3.0880 2.4606 9.9252 43 1 2.4998 2.1173 4.2855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082395327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:07 Heat of formation + Delta-G solvation = -42.289337 kcal Electronic energy + Delta-G solvation = -28147.369375 eV Core-core repulsion = 24000.967406 eV Total energy + Delta-G solvation = -4146.401970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19841 -39.89534 -38.93292 -38.05368 -35.99949 -34.34632 -34.28339 -32.80008 -32.34911 -31.43931 -28.89427 -27.38767 -26.18662 -25.77883 -24.21401 -24.02474 -21.98672 -20.95338 -20.69400 -19.99007 -18.79029 -18.11925 -17.60896 -16.93713 -16.77162 -16.25665 -15.58873 -15.56588 -15.43657 -15.02734 -14.92186 -14.80600 -14.41627 -14.32189 -13.96615 -13.69145 -13.56090 -13.28000 -13.10211 -12.84135 -12.31926 -11.98760 -11.54386 -11.36417 -11.08084 -10.90691 -10.89335 -10.87780 -10.44034 -10.38865 -10.20538 -10.14527 -9.97363 -9.88115 -9.85342 -9.68647 -9.18149 -8.85425 -8.76343 -6.96729 -5.75821 -3.18895 -0.12667 0.73681 2.06906 2.87585 2.87894 2.99314 3.34769 3.40904 3.43181 3.52130 3.66861 4.02736 4.31465 4.33451 4.43300 4.50760 4.58058 4.74245 5.07325 5.17837 5.35283 5.43448 5.51002 5.53735 5.57372 5.60684 5.63690 5.77403 5.90247 5.96459 5.99583 6.09728 6.29054 6.31157 6.59889 6.75636 6.80078 7.17342 7.19573 7.41264 7.51400 7.65599 7.71390 7.76629 8.09703 8.20958 9.09922 9.70171 10.31870 11.28215 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002462 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.490829 B =11372.398796 C =11902.334815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.081 0.919 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.105 0.895 18 N -0.705 5.705 19 C 0.559 3.441 20 O -0.525 6.525 21 C -0.153 4.153 22 C -0.022 4.022 23 C -0.115 4.115 24 C 0.088 3.912 25 C 0.579 3.421 26 N -0.834 5.834 27 O -0.534 6.534 28 N -0.461 5.461 29 C 0.132 3.868 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.397 0.603 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.413 0.587 42 H 0.406 0.594 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -3.571 20.553 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.123 0.877 18 N -0.356 5.356 19 C 0.344 3.656 20 O -0.401 6.401 21 C -0.158 4.158 22 C -0.049 4.049 23 C -0.136 4.136 24 C -0.050 4.050 25 C 0.361 3.639 26 N -0.397 5.397 27 O -0.409 6.409 28 N -0.172 5.172 29 C -0.028 4.028 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.232 0.768 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.244 0.756 42 H 0.237 0.763 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.816 -3.910 20.686 21.130 hybrid contribution -0.171 0.924 -0.781 1.222 sum -1.986 -2.986 19.905 20.226 Atomic orbital electron populations 1.22709 0.81417 1.01992 1.00100 1.87841 1.19374 1.27593 1.95146 1.24079 0.91917 0.83875 1.00627 0.91492 1.22343 0.95433 0.91937 0.88899 1.44307 1.31856 1.33133 1.23518 1.19139 1.11211 1.04071 1.00607 0.90109 1.24808 0.98019 0.99332 0.98406 1.69748 1.20012 1.38606 1.28780 0.85954 0.77428 0.81040 0.80816 1.20439 1.21634 1.21686 1.21600 0.95309 0.93476 0.89275 1.22242 0.96858 1.00576 0.77040 0.87732 1.45918 1.18672 1.62867 1.08140 1.17968 0.83385 0.78683 0.85570 1.90811 1.32780 1.43631 1.72889 1.21333 0.96847 1.02353 0.95273 1.21842 0.97823 0.92753 0.92439 1.22147 0.98779 0.97302 0.95353 1.21238 0.91606 0.98094 0.94083 1.17874 0.82601 0.77115 0.86266 1.43635 1.19514 1.64194 1.12351 1.90846 1.37792 1.50728 1.61554 1.67501 1.27423 1.15989 1.06320 1.22954 0.96599 0.93253 0.90044 0.90273 0.94759 0.93327 0.86892 0.95456 0.93603 0.94665 0.95176 0.76784 0.82383 0.82588 0.75633 0.76275 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.89 101.05 1.10 1.56 16 2 O -0.38 -6.52 10.52 -35.23 -0.37 -6.89 16 3 C 0.05 0.97 3.11 -24.44 -0.08 0.90 16 4 H 0.07 1.09 7.76 -51.93 -0.40 0.69 16 5 C 0.14 3.25 5.63 -2.53 -0.01 3.23 16 6 N -0.60 -14.86 3.39 -170.07 -0.58 -15.43 16 7 C -0.22 -6.01 10.27 -15.06 -0.15 -6.16 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 10 N -0.92 -25.89 10.09 55.49 0.56 -25.33 16 11 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.13 2.70 6.98 -3.07 -0.02 2.68 16 16 C 0.14 2.41 2.99 -65.96 -0.20 2.21 16 17 H 0.10 2.03 7.70 -51.93 -0.40 1.63 16 18 N -0.71 -9.52 5.09 -52.79 -0.27 -9.79 16 19 C 0.56 7.81 7.78 -12.26 -0.10 7.71 16 20 O -0.52 -9.25 16.14 5.34 0.09 -9.16 16 21 C -0.15 -1.66 5.90 -104.73 -0.62 -2.27 16 22 C -0.02 -0.22 9.71 -38.89 -0.38 -0.60 16 23 C -0.12 -1.08 9.62 -39.11 -0.38 -1.45 16 24 C 0.09 0.85 6.75 -82.93 -0.56 0.29 16 25 C 0.58 5.59 8.09 -12.11 -0.10 5.49 16 26 N -0.83 -5.05 8.86 30.64 0.27 -4.78 16 27 O -0.53 -6.74 17.15 5.37 0.09 -6.64 16 28 N -0.46 -4.22 9.52 -9.48 -0.09 -4.31 16 29 C 0.13 1.19 10.71 -17.17 -0.18 1.01 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 38 H 0.40 4.10 6.59 -40.82 -0.27 3.83 16 39 H 0.16 1.48 7.73 -52.49 -0.41 1.08 16 40 H 0.16 1.28 7.63 -52.49 -0.40 0.88 16 41 H 0.41 1.95 8.15 -40.82 -0.33 1.62 16 42 H 0.41 1.72 8.93 -40.82 -0.36 1.36 16 43 H 0.17 1.07 6.42 -52.48 -0.34 0.74 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -33.92 367.16 -6.85 -40.77 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.29 Total: 5.35 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -1.77 Total: 14.23 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.10 Total: -59.65 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.19 Total: -22.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.92 -6.85 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082395327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.522 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds