Wall clock time and date at job start Tue Mar 31 2020 17:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21526 * 119.99937 * 359.97438 * 19 18 16 21 21 C 1.48006 * 119.99838 * 180.02562 * 19 18 16 22 22 C 1.39870 * 120.45878 * 179.97438 * 21 19 18 23 23 C 1.38453 * 118.35563 * 180.02562 * 22 21 19 24 24 C 1.39304 * 119.18912 * 359.97438 * 23 22 21 25 25 C 1.48340 * 119.57050 * 180.02562 * 24 23 22 26 26 N 1.34769 * 119.99771 * 180.02562 * 25 24 23 27 27 O 1.21497 * 119.99809 * 0.02562 * 25 24 23 28 28 N 1.32716 * 120.85934 * 359.97438 * 24 23 22 29 29 C 1.31417 * 121.79648 * 359.74015 * 28 24 23 30 30 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.08000 * 120.82239 * 359.97438 * 22 21 19 40 40 H 1.07998 * 120.40716 * 179.97438 * 23 22 21 41 41 H 0.96998 * 120.00364 * 359.97438 * 26 25 24 42 42 H 0.97004 * 120.00142 * 179.97438 * 26 25 24 43 43 H 1.08009 * 119.63723 * 180.29335 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4549 0.5702 2.2440 21 6 4.4565 1.2333 4.2514 22 6 5.5477 0.8353 5.0308 23 6 5.4774 1.0163 6.4017 24 6 4.3317 1.5845 6.9541 25 6 4.2477 1.7828 8.4218 26 7 3.1432 2.3313 8.9654 27 8 5.1745 1.4507 9.1337 28 7 3.3149 1.9518 6.1843 29 6 3.3452 1.8019 4.8791 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 6.4230 0.3970 4.5747 40 1 6.3006 0.7205 7.0350 41 1 2.4034 2.5967 8.3970 42 1 3.0880 2.4606 9.9252 43 1 2.4998 2.1173 4.2855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082395327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:07 Heat of formation + Delta-G solvation = -70.520484 kcal Electronic energy + Delta-G solvation = -28148.593570 eV Core-core repulsion = 24000.967406 eV Total energy + Delta-G solvation = -4147.626164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03837 -40.99005 -39.95980 -39.29741 -37.50616 -35.79470 -34.98187 -33.89612 -33.54227 -32.60889 -30.53758 -28.93551 -27.54268 -26.86021 -25.76759 -24.78817 -23.03103 -22.34469 -21.95170 -21.42166 -19.63786 -19.21210 -18.75296 -18.32363 -17.91088 -17.22377 -17.12407 -16.46229 -16.41822 -16.17991 -16.03386 -15.91322 -15.78351 -15.54765 -15.19586 -14.92988 -14.65113 -14.43116 -14.28861 -13.96070 -13.85758 -13.66827 -13.18440 -13.00320 -12.76011 -12.58167 -12.32765 -12.01146 -11.90444 -11.69367 -11.53384 -11.48262 -11.16574 -10.80816 -10.79212 -10.76769 -10.58446 -10.45437 -10.18523 -8.96414 -7.80797 -5.27485 -0.93688 0.00955 1.23462 1.47950 1.49357 1.59321 1.82281 1.93037 2.22512 2.45159 2.71403 2.74037 2.99102 3.30457 3.43326 3.56996 3.63137 3.71384 3.81464 3.86344 3.96878 4.00188 4.07375 4.36868 4.45999 4.52022 4.63201 4.69397 4.77353 4.83852 4.85572 4.92100 4.93028 5.23684 5.29137 5.37638 5.46054 5.69745 5.75293 6.18063 6.19938 6.32014 6.35642 6.50943 7.01943 7.05934 7.16661 7.69988 8.31663 9.20775 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002462 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.490829 B =11372.398796 C =11902.334815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.077 3.923 4 H 0.094 0.906 5 C 0.144 3.856 6 N -0.619 5.619 7 C -0.240 4.240 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.982 3.018 12 H -0.268 1.268 13 H -0.295 1.295 14 H -0.286 1.286 15 C 0.131 3.869 16 C 0.155 3.845 17 H 0.084 0.916 18 N -0.692 5.692 19 C 0.563 3.437 20 O -0.566 6.566 21 C -0.163 4.163 22 C -0.021 4.021 23 C -0.116 4.116 24 C 0.086 3.914 25 C 0.576 3.424 26 N -0.812 5.812 27 O -0.569 6.569 28 N -0.456 5.456 29 C 0.143 3.857 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.088 0.912 34 H -0.012 1.012 35 H 0.250 0.750 36 H 0.017 0.983 37 H 0.044 0.956 38 H 0.416 0.584 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.422 0.578 42 H 0.417 0.583 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -2.765 22.646 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.112 0.888 5 C 0.018 3.982 6 N -0.347 5.347 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.810 3.190 12 H -0.193 1.193 13 H -0.222 1.222 14 H -0.213 1.213 15 C 0.004 3.996 16 C 0.049 3.951 17 H 0.102 0.898 18 N -0.344 5.344 19 C 0.350 3.650 20 O -0.446 6.446 21 C -0.169 4.169 22 C -0.047 4.047 23 C -0.137 4.137 24 C -0.052 4.052 25 C 0.359 3.641 26 N -0.376 5.376 27 O -0.448 6.448 28 N -0.168 5.168 29 C -0.018 4.018 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.006 0.994 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.255 0.745 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.255 0.745 42 H 0.250 0.750 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.128 -3.083 22.839 23.258 hybrid contribution 0.197 0.640 -1.391 1.544 sum -2.930 -2.443 21.449 21.785 Atomic orbital electron populations 1.22979 0.79245 1.03872 1.00836 1.87837 1.21745 1.26741 1.95005 1.23661 0.92631 0.84937 0.96997 0.88789 1.22106 0.93846 0.90255 0.92030 1.44550 1.32878 1.32829 1.24406 1.19465 1.11248 1.04686 1.01424 0.89990 1.25617 0.98084 1.01687 1.00048 1.69982 1.20690 1.39965 1.28968 0.84966 0.77557 0.78346 0.78163 1.19275 1.22170 1.21304 1.21680 0.94277 0.95257 0.88375 1.21697 0.95990 0.98135 0.79241 0.89795 1.45623 1.19592 1.62933 1.06222 1.18359 0.82461 0.77400 0.86736 1.90799 1.34346 1.45468 1.73950 1.21071 0.98255 1.04442 0.93088 1.21913 0.97753 0.92355 0.92698 1.22220 0.99154 0.97265 0.95027 1.21399 0.91775 0.97646 0.94384 1.17914 0.82932 0.77202 0.86101 1.43520 1.18571 1.62324 1.13189 1.90836 1.39187 1.52572 1.62160 1.67585 1.26997 1.15980 1.06190 1.23346 0.96529 0.91802 0.90084 0.87956 0.91743 0.94789 0.89396 0.99368 0.94056 0.96474 0.93806 0.74497 0.82317 0.81793 0.74535 0.75021 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.89 113.37 1.23 1.88 16 2 O -0.39 -13.00 10.52 -148.98 -1.57 -14.57 16 3 C 0.08 2.70 3.11 32.08 0.10 2.80 16 4 H 0.09 2.80 7.76 -2.39 -0.02 2.78 16 5 C 0.14 6.87 5.63 86.86 0.49 7.36 16 6 N -0.62 -31.23 3.39 -691.97 -2.35 -33.58 16 7 C -0.24 -13.14 10.27 84.03 0.86 -12.28 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 10 N -0.95 -54.43 10.09 21.65 0.22 -54.21 16 11 Si 0.98 44.49 29.55 68.60 2.03 46.52 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 15 C 0.13 5.43 6.98 86.73 0.61 6.04 16 16 C 0.16 5.37 2.99 46.27 0.14 5.51 16 17 H 0.08 3.31 7.70 -2.39 -0.02 3.29 16 18 N -0.69 -17.28 5.09 -439.23 -2.23 -19.52 16 19 C 0.56 15.00 7.78 86.83 0.68 15.67 16 20 O -0.57 -19.97 16.14 -3.80 -0.06 -20.03 16 21 C -0.16 -3.21 5.90 -19.93 -0.12 -3.33 16 22 C -0.02 -0.39 9.71 22.72 0.22 -0.17 16 23 C -0.12 -1.99 9.62 22.58 0.22 -1.78 16 24 C 0.09 1.48 6.75 41.96 0.28 1.76 16 25 C 0.58 10.03 8.09 86.93 0.70 10.74 16 26 N -0.81 -7.82 8.86 -175.27 -1.55 -9.37 16 27 O -0.57 -13.72 17.15 -3.70 -0.06 -13.78 16 28 N -0.46 -6.95 9.52 -183.90 -1.75 -8.70 16 29 C 0.14 2.11 10.71 85.11 0.91 3.02 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 32 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.09 4.66 5.87 -2.39 -0.01 4.65 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 38 H 0.42 7.12 6.59 -92.71 -0.61 6.51 16 39 H 0.16 2.90 7.73 -2.91 -0.02 2.88 16 40 H 0.16 2.53 7.63 -2.91 -0.02 2.50 16 41 H 0.42 2.71 8.15 -92.71 -0.76 1.95 16 42 H 0.42 2.54 8.93 -92.71 -0.83 1.71 16 43 H 0.20 1.63 6.42 -2.91 -0.02 1.61 16 Total: -1.00 -75.78 367.16 -1.64 -77.43 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.10 Total: 15.52 kcal Atomic # 6 Polarization: 27.52 SS G_CDS: 6.79 Total: 34.31 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -7.67 Total: -125.39 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.69 Total: -48.38 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.78 -1.64 -77.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082395327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.906 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds