Wall clock time and date at job start Tue Mar 31 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47002 * 264.99365 * 3 2 1 5 5 H 1.48503 * 109.47050 * 24.99090 * 3 2 1 6 6 H 1.48498 * 109.47219 * 144.99441 * 3 2 1 7 7 C 1.38811 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00599 * 187.54147 * 7 2 1 9 9 N 1.36944 * 119.99615 * 7.54400 * 7 2 1 10 10 C 1.46770 * 125.36394 * 6.54088 * 9 7 2 11 11 C 1.53914 * 107.62791 * 178.78864 * 10 9 7 12 12 H 1.08996 * 109.52309 * 100.77289 * 11 10 9 13 13 O 1.40850 * 110.30085 * 221.41207 * 11 10 9 14 14 C 1.41319 * 118.31423 * 68.00214 * 13 11 10 15 15 C 1.51972 * 111.60470 * 56.89838 * 14 13 11 16 16 N 1.44962 * 111.93275 * 319.69483 * 15 14 13 17 17 C 1.34779 * 117.33532 * 203.73196 * 16 15 14 18 18 O 1.21280 * 120.00047 * 177.46487 * 17 16 15 19 19 C 1.50696 * 119.99916 * 357.46307 * 17 16 15 20 20 C 1.50705 * 109.47271 * 180.02562 * 19 17 16 21 21 C 1.38242 * 119.97582 * 269.72783 * 20 19 17 22 22 C 1.38198 * 120.02556 * 180.27606 * 21 20 19 23 23 C 1.38458 * 119.97490 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.02428 * 179.97438 * 23 22 21 25 25 C 1.38459 * 119.94840 * 359.97438 * 23 22 21 26 26 C 1.38198 * 119.97507 * 0.02562 * 25 23 22 27 27 C 1.44539 * 125.32794 * 24.01831 * 16 15 14 28 28 H 1.08999 * 109.64983 * 106.18418 * 27 16 15 29 29 C 1.46874 * 125.36034 * 186.51409 * 9 7 2 30 30 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.82438 * 59.26524 * 10 9 7 32 32 H 1.08995 * 109.82710 * 298.31417 * 10 9 7 33 33 H 1.08998 * 109.05666 * 296.35260 * 14 13 11 34 34 H 1.09000 * 109.05826 * 177.43923 * 14 13 11 35 35 H 1.09001 * 108.98850 * 199.06213 * 15 14 13 36 36 H 1.08999 * 108.98932 * 80.32566 * 15 14 13 37 37 H 1.08998 * 109.47193 * 60.00455 * 19 17 16 38 38 H 1.09000 * 109.47377 * 300.00245 * 19 17 16 39 39 H 1.08001 * 119.98586 * 0.25240 * 21 20 19 40 40 H 1.08001 * 120.01285 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.01296 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.98478 * 179.97438 * 26 25 23 43 43 H 1.08999 * 110.06852 * 317.05827 * 29 9 7 44 44 H 1.09007 * 110.06293 * 78.52760 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3948 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4731 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0833 -1.2062 0.1222 9 7 1.3345 -2.3829 -0.1568 10 6 -0.0945 -2.5091 -0.4666 11 6 -0.4159 -4.0100 -0.5808 12 1 -0.8866 -4.3528 0.3406 13 8 -1.2814 -4.2432 -1.6672 14 6 -0.7855 -4.0402 -2.9749 15 6 0.4503 -4.8834 -3.2418 16 7 1.3377 -4.9213 -2.0962 17 6 2.6374 -5.1919 -2.3289 18 8 3.4308 -5.1902 -1.4116 19 6 3.1048 -5.4965 -3.7288 20 6 4.5882 -5.7621 -3.7165 21 6 5.4780 -4.7202 -3.8998 22 6 6.8384 -4.9636 -3.8945 23 6 7.3100 -6.2517 -3.7060 24 9 8.6396 -6.4908 -3.7011 25 6 6.4178 -7.2945 -3.5226 26 6 5.0578 -7.0487 -3.5283 27 6 0.9414 -4.6984 -0.7242 28 1 0.9340 -5.6463 -0.1862 29 6 1.9258 -3.7224 -0.0412 30 1 -0.4850 0.8400 0.0004 31 1 -0.3133 -2.0114 -1.4114 32 1 -0.6869 -2.0641 0.3328 33 1 -0.5318 -2.9875 -3.0998 34 1 -1.5599 -4.3062 -3.6944 35 1 0.9877 -4.4655 -4.0931 36 1 0.1405 -5.8999 -3.4842 37 1 2.8932 -4.6452 -4.3758 38 1 2.5815 -6.3763 -4.1032 39 1 5.1099 -3.7157 -4.0476 40 1 7.5334 -4.1493 -4.0372 41 1 6.7845 -8.2997 -3.3759 42 1 4.3618 -7.8620 -3.3856 43 1 2.8910 -3.7500 -0.5468 44 1 2.0462 -3.9886 1.0090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083262995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:15 Heat of formation + Delta-G solvation = -43.412221 kcal Electronic energy + Delta-G solvation = -29603.793281 eV Core-core repulsion = 25437.422658 eV Total energy + Delta-G solvation = -4166.370623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.97588 -40.89779 -39.33926 -38.12655 -35.90475 -34.84178 -32.92156 -32.12639 -31.24467 -30.02689 -28.33588 -27.84665 -26.55952 -24.55546 -23.33338 -23.18040 -22.17772 -20.83462 -19.83955 -18.53456 -17.76494 -17.51666 -16.93644 -16.59723 -16.47806 -15.95281 -15.66664 -15.34463 -15.23210 -14.91413 -14.67808 -14.20975 -13.99407 -13.86112 -13.74604 -13.60254 -13.38997 -12.78448 -12.66277 -12.25902 -12.15225 -12.07299 -11.88061 -11.65986 -11.38248 -11.15422 -11.09709 -10.88918 -10.72095 -10.57305 -10.42461 -10.09466 -9.73345 -9.39105 -9.19750 -8.97070 -8.64704 -8.55948 -8.23857 -6.78440 -5.70787 -3.05904 1.00869 1.14700 2.75671 3.03162 3.39470 3.44983 3.46871 3.51615 4.06019 4.16065 4.48707 4.49413 4.56349 4.63499 4.77726 4.83698 4.95026 5.09964 5.12264 5.15799 5.28738 5.36619 5.40005 5.43003 5.50383 5.65167 5.71406 5.78593 5.82620 5.89027 5.94602 6.00667 6.05100 6.11593 6.28303 6.38208 6.51198 6.77211 6.84604 7.16087 7.29724 7.47579 7.61954 7.72520 7.84482 8.25671 8.37823 9.21578 9.82738 10.46484 11.39190 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.003882 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.603007 B = 7211.445238 C = 8951.901485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.149 3.851 11 C 0.070 3.930 12 H 0.111 0.889 13 O -0.371 6.371 14 C 0.058 3.942 15 C 0.078 3.922 16 N -0.585 5.585 17 C 0.507 3.493 18 O -0.516 6.516 19 C -0.102 4.102 20 C -0.071 4.071 21 C -0.073 4.073 22 C -0.151 4.151 23 C 0.093 3.907 24 F -0.144 7.144 25 C -0.154 4.154 26 C -0.077 4.077 27 C 0.110 3.890 28 H 0.071 0.929 29 C 0.110 3.890 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -14.776 -11.886 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.023 3.977 11 C 0.011 3.989 12 H 0.128 0.872 13 O -0.288 6.288 14 C -0.020 4.020 15 C -0.046 4.046 16 N -0.319 5.319 17 C 0.295 3.705 18 O -0.392 6.392 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.091 4.091 22 C -0.169 4.169 23 C 0.074 3.926 24 F -0.122 7.122 25 C -0.173 4.173 26 C -0.095 4.095 27 C 0.005 3.995 28 H 0.089 0.911 29 C -0.016 4.016 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.104 0.896 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.079 -14.609 -11.324 18.929 hybrid contribution 0.839 1.023 -0.034 1.323 sum 4.918 -13.586 -11.357 18.378 Atomic orbital electron populations 1.69934 1.04849 1.25028 1.57148 1.24781 0.95654 0.97631 1.02398 0.86156 0.78677 0.83477 0.77611 1.21698 1.21685 1.20684 1.19033 0.90931 0.82489 1.42657 0.90509 1.44231 1.05024 1.00290 1.83233 1.21710 0.86489 0.88343 1.01111 1.22997 0.88416 0.98558 0.88920 0.87180 1.86871 1.39646 1.89162 1.13111 1.22213 0.94948 0.99512 0.85287 1.21660 0.93198 1.01026 0.88699 1.46614 1.08199 1.70060 1.07057 1.20449 0.81859 0.77472 0.90709 1.90645 1.53493 1.49804 1.45261 1.20761 0.93111 1.04358 0.95964 1.19365 0.94208 0.93490 1.00137 1.20917 0.91909 0.99191 0.97081 1.21105 0.96720 0.95464 1.03652 1.17720 0.77260 0.94444 1.03188 1.91484 1.31398 1.95240 1.94101 1.21052 0.93288 0.98826 1.04085 1.20815 0.94536 0.96537 0.97595 1.21827 0.97471 0.98953 0.81220 0.91070 1.22165 0.97763 0.84568 0.97098 0.93768 0.94425 0.91366 0.92175 0.87960 0.90013 0.91726 0.87760 0.87908 0.84918 0.84744 0.84891 0.85242 0.89596 0.95880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.44 55.49 0.58 -26.40 16 2 C -0.01 -0.24 5.44 -17.43 -0.09 -0.34 16 3 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.31 10.24 -15.06 -0.15 -6.47 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.52 3.39 -171.21 -0.58 -16.10 16 10 C 0.15 3.57 5.07 -3.42 -0.02 3.55 16 11 C 0.07 1.32 3.82 -26.32 -0.10 1.22 16 12 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 13 O -0.37 -6.33 10.24 -34.45 -0.35 -6.68 16 14 C 0.06 0.79 6.72 36.63 0.25 1.04 16 15 C 0.08 0.92 5.87 -5.39 -0.03 0.89 16 16 N -0.59 -9.07 3.08 -168.51 -0.52 -9.59 16 17 C 0.51 7.76 7.13 -10.99 -0.08 7.68 16 18 O -0.52 -9.83 12.92 5.56 0.07 -9.76 16 19 C -0.10 -1.07 4.38 -29.03 -0.13 -1.20 16 20 C -0.07 -0.83 4.37 -104.61 -0.46 -1.28 16 21 C -0.07 -0.87 9.70 -39.59 -0.38 -1.25 16 22 C -0.15 -1.77 10.03 -39.52 -0.40 -2.16 16 23 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 24 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 25 C -0.15 -1.67 10.03 -39.51 -0.40 -2.06 16 26 C -0.08 -0.82 9.70 -39.59 -0.38 -1.20 16 27 C 0.11 2.00 3.45 -68.24 -0.24 1.76 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 C 0.11 2.45 6.29 -3.03 -0.02 2.43 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 0.98 6.30 -51.93 -0.33 0.66 16 32 H 0.07 1.85 6.96 -51.93 -0.36 1.49 16 33 H 0.06 0.97 6.81 -51.93 -0.35 0.61 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.77 6.31 -51.93 -0.33 0.44 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.94 7.09 -51.93 -0.37 0.57 16 38 H 0.10 0.78 8.01 -51.93 -0.42 0.36 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.09 2.04 4.81 -52.39 -0.25 1.79 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -33.74 353.15 -9.14 -42.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.76 Total: 1.34 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.92 Total: 3.44 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.52 Total: -52.08 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.28 Total: -16.44 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.74 -9.14 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083262995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.530 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds