Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47002 * 264.99365 * 3 2 1 5 5 H 1.48503 * 109.47050 * 24.99090 * 3 2 1 6 6 H 1.48498 * 109.47219 * 144.99441 * 3 2 1 7 7 C 1.38811 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00599 * 187.54147 * 7 2 1 9 9 N 1.36944 * 119.99615 * 7.54400 * 7 2 1 10 10 C 1.46770 * 125.36394 * 6.54088 * 9 7 2 11 11 C 1.53914 * 107.62791 * 178.78864 * 10 9 7 12 12 H 1.08996 * 109.52309 * 100.77289 * 11 10 9 13 13 O 1.40850 * 110.30085 * 221.41207 * 11 10 9 14 14 C 1.41319 * 118.31423 * 68.00214 * 13 11 10 15 15 C 1.51972 * 111.60470 * 56.89838 * 14 13 11 16 16 N 1.44962 * 111.93275 * 319.69483 * 15 14 13 17 17 C 1.34779 * 117.33532 * 203.73196 * 16 15 14 18 18 O 1.21280 * 120.00047 * 177.46487 * 17 16 15 19 19 C 1.50696 * 119.99916 * 357.46307 * 17 16 15 20 20 C 1.50705 * 109.47271 * 180.02562 * 19 17 16 21 21 C 1.38242 * 119.97582 * 269.72783 * 20 19 17 22 22 C 1.38198 * 120.02556 * 180.27606 * 21 20 19 23 23 C 1.38458 * 119.97490 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.02428 * 179.97438 * 23 22 21 25 25 C 1.38459 * 119.94840 * 359.97438 * 23 22 21 26 26 C 1.38198 * 119.97507 * 0.02562 * 25 23 22 27 27 C 1.44539 * 125.32794 * 24.01831 * 16 15 14 28 28 H 1.08999 * 109.64983 * 106.18418 * 27 16 15 29 29 C 1.46874 * 125.36034 * 186.51409 * 9 7 2 30 30 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.82438 * 59.26524 * 10 9 7 32 32 H 1.08995 * 109.82710 * 298.31417 * 10 9 7 33 33 H 1.08998 * 109.05666 * 296.35260 * 14 13 11 34 34 H 1.09000 * 109.05826 * 177.43923 * 14 13 11 35 35 H 1.09001 * 108.98850 * 199.06213 * 15 14 13 36 36 H 1.08999 * 108.98932 * 80.32566 * 15 14 13 37 37 H 1.08998 * 109.47193 * 60.00455 * 19 17 16 38 38 H 1.09000 * 109.47377 * 300.00245 * 19 17 16 39 39 H 1.08001 * 119.98586 * 0.25240 * 21 20 19 40 40 H 1.08001 * 120.01285 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.01296 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.98478 * 179.97438 * 26 25 23 43 43 H 1.08999 * 110.06852 * 317.05827 * 29 9 7 44 44 H 1.09007 * 110.06293 * 78.52760 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3948 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4731 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0833 -1.2062 0.1222 9 7 1.3345 -2.3829 -0.1568 10 6 -0.0945 -2.5091 -0.4666 11 6 -0.4159 -4.0100 -0.5808 12 1 -0.8866 -4.3528 0.3406 13 8 -1.2814 -4.2432 -1.6672 14 6 -0.7855 -4.0402 -2.9749 15 6 0.4503 -4.8834 -3.2418 16 7 1.3377 -4.9213 -2.0962 17 6 2.6374 -5.1919 -2.3289 18 8 3.4308 -5.1902 -1.4116 19 6 3.1048 -5.4965 -3.7288 20 6 4.5882 -5.7621 -3.7165 21 6 5.4780 -4.7202 -3.8998 22 6 6.8384 -4.9636 -3.8945 23 6 7.3100 -6.2517 -3.7060 24 9 8.6396 -6.4908 -3.7011 25 6 6.4178 -7.2945 -3.5226 26 6 5.0578 -7.0487 -3.5283 27 6 0.9414 -4.6984 -0.7242 28 1 0.9340 -5.6463 -0.1862 29 6 1.9258 -3.7224 -0.0412 30 1 -0.4850 0.8400 0.0004 31 1 -0.3133 -2.0114 -1.4114 32 1 -0.6869 -2.0641 0.3328 33 1 -0.5318 -2.9875 -3.0998 34 1 -1.5599 -4.3062 -3.6944 35 1 0.9877 -4.4655 -4.0931 36 1 0.1405 -5.8999 -3.4842 37 1 2.8932 -4.6452 -4.3758 38 1 2.5815 -6.3763 -4.1032 39 1 5.1099 -3.7157 -4.0476 40 1 7.5334 -4.1493 -4.0372 41 1 6.7845 -8.2997 -3.3759 42 1 4.3618 -7.8620 -3.3856 43 1 2.8910 -3.7500 -0.5468 44 1 2.0462 -3.9886 1.0090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083262995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = -65.086451 kcal Electronic energy + Delta-G solvation = -29604.733147 eV Core-core repulsion = 25437.422658 eV Total energy + Delta-G solvation = -4167.310488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.89981 -42.16230 -40.36625 -39.28829 -37.60007 -36.08396 -34.47564 -33.41566 -32.07298 -31.65676 -29.58788 -29.45505 -27.85591 -26.38483 -24.62900 -24.01754 -23.31562 -22.30141 -21.26908 -19.85770 -19.12513 -18.64253 -18.21262 -18.13331 -17.49005 -17.02325 -16.92174 -16.58761 -16.50484 -16.14038 -16.04695 -15.68733 -15.27713 -15.14802 -14.89483 -14.60647 -14.41784 -14.24457 -14.00205 -13.83508 -13.58204 -13.11462 -13.06474 -12.93960 -12.87713 -12.70736 -12.54598 -12.34863 -12.15907 -12.12287 -11.92104 -11.81015 -11.65513 -10.82323 -10.78128 -10.28706 -10.03403 -9.52854 -9.48634 -8.88559 -7.88097 -5.26258 0.13068 0.31067 1.41604 1.43145 1.52129 1.63244 1.90663 2.44838 2.62023 2.80805 3.27673 3.30072 3.42931 3.62337 3.72422 3.73741 3.76538 3.87032 3.98003 4.02270 4.13504 4.21482 4.30439 4.33107 4.40126 4.47517 4.58936 4.62639 4.65017 4.77136 4.90657 4.98037 5.03609 5.06720 5.13046 5.17031 5.27059 5.34422 5.49096 5.54282 5.64840 5.69167 5.93758 6.16219 6.31616 6.46158 7.05829 7.22355 7.73210 8.35288 9.19477 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.003882 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.603007 B = 7211.445238 C = 8951.901485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.975 3.025 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.617 5.617 10 C 0.160 3.840 11 C 0.087 3.913 12 H 0.122 0.878 13 O -0.374 6.374 14 C 0.048 3.952 15 C 0.073 3.927 16 N -0.592 5.592 17 C 0.502 3.498 18 O -0.562 6.562 19 C -0.091 4.091 20 C -0.081 4.081 21 C -0.089 4.089 22 C -0.162 4.162 23 C 0.073 3.927 24 F -0.151 7.151 25 C -0.156 4.156 26 C -0.078 4.078 27 C 0.124 3.876 28 H 0.089 0.911 29 C 0.107 3.893 30 H 0.248 0.752 31 H 0.010 0.990 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.075 0.925 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -16.710 -13.902 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.344 5.344 10 C 0.035 3.965 11 C 0.027 3.973 12 H 0.140 0.860 13 O -0.291 6.291 14 C -0.029 4.029 15 C -0.049 4.049 16 N -0.326 5.326 17 C 0.292 3.708 18 O -0.441 6.441 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.107 4.107 22 C -0.181 4.181 23 C 0.054 3.946 24 F -0.129 7.129 25 C -0.174 4.174 26 C -0.095 4.095 27 C 0.018 3.982 28 H 0.107 0.893 29 C -0.018 4.018 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.092 0.908 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.639 -16.570 -13.378 21.605 hybrid contribution 0.980 1.634 0.582 1.992 sum 4.619 -14.936 -12.796 20.203 Atomic orbital electron populations 1.70155 1.06108 1.25390 1.57739 1.25570 0.96528 1.00703 1.02286 0.85156 0.77559 0.79232 0.77767 1.20950 1.21622 1.19954 1.19287 0.91019 0.84039 1.42858 0.91201 1.44467 1.05934 1.01013 1.82985 1.21453 0.85105 0.91953 0.98013 1.22660 0.89390 0.94609 0.90622 0.86024 1.86876 1.39510 1.88696 1.14014 1.22573 0.97625 0.98319 0.84340 1.22006 0.91835 1.03183 0.87896 1.46784 1.09240 1.69813 1.06727 1.21297 0.81148 0.76145 0.92226 1.90624 1.54496 1.51846 1.47172 1.20818 0.92489 1.06929 0.92776 1.19597 0.94878 0.93734 0.99956 1.21088 0.92198 0.99691 0.97727 1.21273 0.97105 0.95862 1.03841 1.17976 0.77268 0.95104 1.04215 1.91462 1.31911 1.95292 1.94274 1.21354 0.93426 0.99459 1.03202 1.21151 0.94842 0.96997 0.96557 1.21500 0.95185 0.98182 0.83300 0.89280 1.22232 0.98536 0.84152 0.96866 0.94220 0.97242 0.95371 0.95527 0.83618 0.87203 0.87502 0.85864 0.83716 0.84801 0.84053 0.82913 0.82636 0.90750 0.97161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.21 10.44 21.65 0.23 -56.99 16 2 C -0.06 -3.33 5.44 84.86 0.46 -2.86 16 3 Si 0.97 46.72 29.56 68.60 2.03 48.74 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.24 -14.24 10.24 84.03 0.86 -13.38 16 8 H 0.07 4.07 7.84 -2.91 -0.02 4.05 16 9 N -0.62 -33.01 3.39 -695.57 -2.36 -35.36 16 10 C 0.16 7.98 5.07 86.64 0.44 8.42 16 11 C 0.09 3.23 3.82 30.86 0.12 3.35 16 12 H 0.12 4.21 8.14 -2.39 -0.02 4.20 16 13 O -0.37 -12.08 10.24 -146.17 -1.50 -13.58 16 14 C 0.05 1.18 6.72 71.64 0.48 1.66 16 15 C 0.07 1.39 5.87 86.33 0.51 1.90 16 16 N -0.59 -16.77 3.08 -805.44 -2.48 -19.26 16 17 C 0.50 14.13 7.13 87.66 0.63 14.75 16 18 O -0.56 -21.01 12.92 -3.03 -0.04 -21.05 16 19 C -0.09 -1.56 4.38 29.10 0.13 -1.43 16 20 C -0.08 -1.68 4.37 -19.86 -0.09 -1.77 16 21 C -0.09 -2.04 9.70 22.26 0.22 -1.82 16 22 C -0.16 -3.76 10.03 22.31 0.22 -3.53 16 23 C 0.07 1.72 7.30 22.37 0.16 1.89 16 24 F -0.15 -3.72 17.27 44.97 0.78 -2.94 16 25 C -0.16 -3.09 10.03 22.31 0.22 -2.87 16 26 C -0.08 -1.44 9.70 22.26 0.22 -1.22 16 27 C 0.12 4.38 3.45 45.83 0.16 4.54 16 28 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 29 C 0.11 4.90 6.29 86.83 0.55 5.44 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.01 0.52 6.30 -2.39 -0.02 0.50 16 32 H 0.03 1.61 6.96 -2.39 -0.02 1.59 16 33 H 0.03 0.84 6.81 -2.39 -0.02 0.82 16 34 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.11 1.52 6.31 -2.39 -0.02 1.50 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.68 7.09 -2.39 -0.02 1.66 16 38 H 0.15 1.29 8.01 -2.39 -0.02 1.27 16 39 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.07 3.63 4.81 -9.70 -0.05 3.58 16 44 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -77.99 353.15 2.93 -75.06 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.99 Total: 12.30 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.28 Total: 13.07 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -4.61 Total: -111.61 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.54 Total: -34.62 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.94 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -77.99 2.93 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083262995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.973 kcal (2) G-P(sol) polarization free energy of solvation -77.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds