Wall clock time and date at job start Tue Mar 31 2020 18:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00409 * 2 1 4 4 H 1.48498 * 109.47450 * 274.98376 * 3 2 1 5 5 H 1.48503 * 109.47542 * 34.98466 * 3 2 1 6 6 H 1.48500 * 109.47273 * 154.98257 * 3 2 1 7 7 C 1.38817 * 119.99399 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 187.51519 * 7 2 1 9 9 N 1.36931 * 120.00159 * 7.51811 * 7 2 1 10 10 C 1.46776 * 125.36534 * 354.90171 * 9 7 2 11 11 C 1.53910 * 107.63184 * 178.80711 * 10 9 7 12 12 H 1.09002 * 109.52179 * 101.56847 * 11 10 9 13 13 O 1.40857 * 110.30779 * 221.40933 * 11 10 9 14 14 C 1.41324 * 118.30808 * 68.01283 * 13 11 10 15 15 C 1.51961 * 111.61063 * 56.88948 * 14 13 11 16 16 N 1.44962 * 111.93848 * 319.69212 * 15 14 13 17 17 C 1.34776 * 117.33845 * 203.73737 * 16 15 14 18 18 O 1.21550 * 119.99931 * 182.94386 * 17 16 15 19 19 C 1.47845 * 120.00027 * 2.94064 * 17 16 15 20 20 C 1.39580 * 120.14166 * 335.56269 * 19 17 16 21 21 C 1.37955 * 119.84793 * 179.74952 * 20 19 17 22 22 C 1.38366 * 120.14694 * 0.52530 * 21 20 19 23 23 C 1.50696 * 119.85401 * 179.76411 * 22 21 20 24 24 F 1.39898 * 109.47502 * 269.98010 * 23 22 21 25 25 C 1.38359 * 120.29203 * 359.74815 * 22 21 20 26 26 C 1.37956 * 120.14207 * 359.97438 * 25 22 21 27 27 C 1.44552 * 125.32146 * 23.76384 * 16 15 14 28 28 H 1.09000 * 109.29976 * 106.17416 * 27 16 15 29 29 C 1.46878 * 125.36477 * 174.89728 * 9 7 2 30 30 H 0.97010 * 119.99690 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.82244 * 59.28543 * 10 9 7 32 32 H 1.08993 * 109.82344 * 298.33848 * 10 9 7 33 33 H 1.09005 * 109.04776 * 296.33840 * 14 13 11 34 34 H 1.09003 * 108.99279 * 177.40070 * 14 13 11 35 35 H 1.09006 * 108.98289 * 199.06500 * 15 14 13 36 36 H 1.08994 * 108.98534 * 80.33292 * 15 14 13 37 37 H 1.07997 * 120.07675 * 0.02562 * 20 19 17 38 38 H 1.07996 * 119.93045 * 180.27787 * 21 20 19 39 39 H 1.09002 * 109.46814 * 29.98662 * 23 22 21 40 40 H 1.09006 * 109.46712 * 149.97849 * 23 22 21 41 41 H 1.07997 * 119.93122 * 179.97438 * 25 22 21 42 42 H 1.08003 * 120.07257 * 179.97438 * 26 25 22 43 43 H 1.08994 * 110.06753 * 317.04100 * 29 9 7 44 44 H 1.09007 * 110.06006 * 78.50293 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5045 2.6200 0.8027 6 1 3.5965 1.4118 0.5921 7 6 2.0101 -1.2023 0.0005 8 1 3.0832 -1.2063 0.1229 9 7 1.3342 -2.3830 -0.1541 10 6 -0.1252 -2.5238 -0.2228 11 6 -0.4404 -4.0161 -0.4293 12 1 -0.7509 -4.4572 0.5178 13 8 -1.4798 -4.1709 -1.3672 14 6 -1.2238 -3.8279 -2.7141 15 6 -0.0422 -4.6023 -3.2739 16 7 1.0330 -4.7220 -2.3091 17 6 2.2754 -4.9278 -2.7892 18 8 3.2044 -5.0888 -2.0221 19 6 2.5082 -4.9579 -4.2489 20 6 1.4660 -5.2837 -5.1183 21 6 1.6887 -5.3048 -6.4796 22 6 2.9445 -5.0146 -6.9829 23 6 3.1817 -5.0449 -8.4708 24 9 3.5816 -6.3297 -8.8533 25 6 3.9833 -4.6965 -6.1262 26 6 3.7726 -4.6662 -4.7632 27 6 0.8811 -4.6392 -0.8739 28 1 0.9796 -5.6356 -0.4431 29 6 1.9554 -3.7083 -0.2774 30 1 -0.4850 0.8402 -0.0004 31 1 -0.5133 -1.9447 -1.0608 32 1 -0.5742 -2.1764 0.7075 33 1 -1.0110 -2.7606 -2.7751 34 1 -2.1089 -4.0487 -3.3107 35 1 0.3314 -4.0877 -4.1593 36 1 -0.3754 -5.6000 -3.5595 37 1 0.4864 -5.5143 -4.7265 38 1 0.8821 -5.5523 -7.1538 39 1 2.2609 -4.7809 -8.9909 40 1 3.9626 -4.3294 -8.7288 41 1 4.9612 -4.4714 -6.5253 42 1 4.5843 -4.4181 -4.0954 43 1 2.8172 -3.6570 -0.9427 44 1 2.2620 -4.0703 0.7040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083287414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:45 Heat of formation + Delta-G solvation = -19.210143 kcal Electronic energy + Delta-G solvation = -29814.388816 eV Core-core repulsion = 25649.067674 eV Total energy + Delta-G solvation = -4165.321142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.92959 -41.21546 -39.33270 -38.06550 -35.97669 -35.14507 -32.94623 -32.06266 -31.22130 -30.02423 -28.20988 -27.79983 -26.57397 -24.70165 -24.00899 -22.69365 -22.37519 -21.02921 -19.90917 -19.00218 -17.72978 -17.09222 -16.79488 -16.58334 -16.30157 -16.16494 -15.68426 -15.54058 -15.10148 -14.84834 -14.78286 -14.32655 -14.27225 -14.01236 -13.67295 -13.30936 -13.16043 -12.91680 -12.63034 -12.40160 -12.14079 -11.87687 -11.65367 -11.52653 -11.23755 -11.15949 -10.93452 -10.87648 -10.66447 -10.61426 -10.42816 -10.10322 -9.74239 -9.52576 -9.17608 -9.12982 -8.85891 -8.60349 -8.28039 -6.82599 -5.74551 -3.06315 0.64319 1.15854 2.77812 3.00211 3.38668 3.44516 3.46479 3.64021 4.06325 4.13173 4.33848 4.42610 4.49588 4.56168 4.69277 4.78467 4.80195 4.99824 5.07578 5.20341 5.26662 5.30607 5.34531 5.35656 5.50385 5.55299 5.64048 5.68498 5.76772 5.81486 5.93401 6.00500 6.04531 6.17286 6.18583 6.24953 6.46893 6.63512 6.79569 7.08689 7.36483 7.42979 7.49502 7.72066 7.85806 8.22393 8.30342 9.19996 9.80461 10.44143 11.37268 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.003740 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.464554 B = 7484.150443 C = 8416.204944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.069 3.931 12 H 0.112 0.888 13 O -0.370 6.370 14 C 0.053 3.947 15 C 0.063 3.937 16 N -0.575 5.575 17 C 0.550 3.450 18 O -0.521 6.521 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.120 4.120 23 C 0.105 3.895 24 F -0.211 7.211 25 C -0.106 4.106 26 C -0.061 4.061 27 C 0.110 3.890 28 H 0.074 0.926 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -11.404 -15.341 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.010 3.990 12 H 0.129 0.871 13 O -0.287 6.287 14 C -0.024 4.024 15 C -0.060 4.060 16 N -0.308 5.308 17 C 0.339 3.661 18 O -0.398 6.398 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.121 4.121 23 C 0.050 3.950 24 F -0.192 7.192 25 C -0.124 4.124 26 C -0.080 4.080 27 C 0.006 3.994 28 H 0.092 0.908 29 C -0.010 4.010 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.095 0.905 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.028 -11.353 -14.815 18.664 hybrid contribution 0.654 1.038 -0.090 1.230 sum 0.682 -10.315 -14.905 18.139 Atomic orbital electron populations 1.69969 1.04849 1.25012 1.57090 1.24801 0.95709 0.97609 1.02236 0.86121 0.78806 0.83600 0.77454 1.21720 1.21732 1.20571 1.19064 0.91270 0.82390 1.42514 0.90357 1.44238 1.01147 1.01379 1.86177 1.21692 0.85342 0.88401 1.01983 1.22993 0.85243 0.99527 0.91221 0.87084 1.86889 1.38055 1.87086 1.16705 1.22339 0.96859 0.99567 0.83647 1.22621 0.89709 1.00412 0.93275 1.46518 1.07040 1.70763 1.06458 1.18343 0.82679 0.77372 0.87754 1.90723 1.42265 1.48547 1.58314 1.20075 0.95084 1.03266 0.93315 1.22618 1.00348 0.97648 0.93338 1.21012 0.96430 0.99796 0.95369 1.20416 0.94728 1.01334 0.95629 1.20837 1.01962 0.80958 0.91204 1.92816 1.92648 1.41692 1.92093 1.21008 0.98744 0.99764 0.92923 1.21273 0.96114 0.95441 0.95156 1.21740 0.98810 0.99753 0.79089 0.90778 1.21950 0.95706 0.85351 0.98028 0.93770 0.92485 0.93111 0.91814 0.87832 0.88255 0.90978 0.82189 0.85196 0.89682 0.89712 0.85161 0.84414 0.90498 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.31 55.49 0.57 -26.31 16 2 C -0.01 -0.21 5.47 -17.43 -0.10 -0.31 16 3 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.36 10.24 -15.06 -0.15 -6.52 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 9 N -0.60 -15.62 3.39 -171.44 -0.58 -16.20 16 10 C 0.15 3.64 5.03 -3.42 -0.02 3.63 16 11 C 0.07 1.31 3.83 -26.40 -0.10 1.21 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 13 O -0.37 -6.42 10.24 -34.46 -0.35 -6.77 16 14 C 0.05 0.76 6.72 36.63 0.25 1.01 16 15 C 0.06 0.82 4.57 -5.39 -0.02 0.79 16 16 N -0.58 -9.68 3.09 -170.48 -0.53 -10.20 16 17 C 0.55 9.58 6.88 -12.33 -0.08 9.49 16 18 O -0.52 -10.58 13.76 5.32 0.07 -10.51 16 19 C -0.11 -1.62 5.53 -104.97 -0.58 -2.20 16 20 C -0.12 -1.34 7.50 -39.18 -0.29 -1.63 16 21 C -0.11 -1.01 9.68 -39.64 -0.38 -1.40 16 22 C -0.12 -1.16 5.60 -104.53 -0.59 -1.74 16 23 C 0.11 0.76 7.67 36.00 0.28 1.04 16 24 F -0.21 -2.13 17.34 2.25 0.04 -2.09 16 25 C -0.11 -1.13 9.68 -39.64 -0.38 -1.51 16 26 C -0.06 -0.81 9.59 -39.19 -0.38 -1.18 16 27 C 0.11 2.07 3.36 -68.51 -0.23 1.84 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 C 0.12 2.60 6.29 -3.23 -0.02 2.58 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.51 5.67 -51.93 -0.29 1.22 16 32 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 33 H 0.06 1.08 6.82 -51.93 -0.35 0.73 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.18 5.03 -51.93 -0.26 0.92 16 36 H 0.07 0.74 6.68 -51.93 -0.35 0.39 16 37 H 0.16 1.47 3.65 -53.19 -0.19 1.28 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 1.86 7.84 -52.48 -0.41 1.45 16 43 H 0.08 1.85 5.01 -51.93 -0.26 1.59 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -33.89 345.93 -8.83 -42.73 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.44 Total: 1.77 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.81 Total: 5.10 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.53 Total: -52.72 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.28 Total: -17.28 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.89 -8.83 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083287414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.517 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds