Wall clock time and date at job start Tue Mar 31 2020 18:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00409 * 2 1 4 4 H 1.48498 * 109.47450 * 274.98376 * 3 2 1 5 5 H 1.48503 * 109.47542 * 34.98466 * 3 2 1 6 6 H 1.48500 * 109.47273 * 154.98257 * 3 2 1 7 7 C 1.38817 * 119.99399 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 187.51519 * 7 2 1 9 9 N 1.36931 * 120.00159 * 7.51811 * 7 2 1 10 10 C 1.46776 * 125.36534 * 354.90171 * 9 7 2 11 11 C 1.53910 * 107.63184 * 178.80711 * 10 9 7 12 12 H 1.09002 * 109.52179 * 101.56847 * 11 10 9 13 13 O 1.40857 * 110.30779 * 221.40933 * 11 10 9 14 14 C 1.41324 * 118.30808 * 68.01283 * 13 11 10 15 15 C 1.51961 * 111.61063 * 56.88948 * 14 13 11 16 16 N 1.44962 * 111.93848 * 319.69212 * 15 14 13 17 17 C 1.34776 * 117.33845 * 203.73737 * 16 15 14 18 18 O 1.21550 * 119.99931 * 182.94386 * 17 16 15 19 19 C 1.47845 * 120.00027 * 2.94064 * 17 16 15 20 20 C 1.39580 * 120.14166 * 335.56269 * 19 17 16 21 21 C 1.37955 * 119.84793 * 179.74952 * 20 19 17 22 22 C 1.38366 * 120.14694 * 0.52530 * 21 20 19 23 23 C 1.50696 * 119.85401 * 179.76411 * 22 21 20 24 24 F 1.39898 * 109.47502 * 269.98010 * 23 22 21 25 25 C 1.38359 * 120.29203 * 359.74815 * 22 21 20 26 26 C 1.37956 * 120.14207 * 359.97438 * 25 22 21 27 27 C 1.44552 * 125.32146 * 23.76384 * 16 15 14 28 28 H 1.09000 * 109.29976 * 106.17416 * 27 16 15 29 29 C 1.46878 * 125.36477 * 174.89728 * 9 7 2 30 30 H 0.97010 * 119.99690 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.82244 * 59.28543 * 10 9 7 32 32 H 1.08993 * 109.82344 * 298.33848 * 10 9 7 33 33 H 1.09005 * 109.04776 * 296.33840 * 14 13 11 34 34 H 1.09003 * 108.99279 * 177.40070 * 14 13 11 35 35 H 1.09006 * 108.98289 * 199.06500 * 15 14 13 36 36 H 1.08994 * 108.98534 * 80.33292 * 15 14 13 37 37 H 1.07997 * 120.07675 * 0.02562 * 20 19 17 38 38 H 1.07996 * 119.93045 * 180.27787 * 21 20 19 39 39 H 1.09002 * 109.46814 * 29.98662 * 23 22 21 40 40 H 1.09006 * 109.46712 * 149.97849 * 23 22 21 41 41 H 1.07997 * 119.93122 * 179.97438 * 25 22 21 42 42 H 1.08003 * 120.07257 * 179.97438 * 26 25 22 43 43 H 1.08994 * 110.06753 * 317.04100 * 29 9 7 44 44 H 1.09007 * 110.06006 * 78.50293 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5045 2.6200 0.8027 6 1 3.5965 1.4118 0.5921 7 6 2.0101 -1.2023 0.0005 8 1 3.0832 -1.2063 0.1229 9 7 1.3342 -2.3830 -0.1541 10 6 -0.1252 -2.5238 -0.2228 11 6 -0.4404 -4.0161 -0.4293 12 1 -0.7509 -4.4572 0.5178 13 8 -1.4798 -4.1709 -1.3672 14 6 -1.2238 -3.8279 -2.7141 15 6 -0.0422 -4.6023 -3.2739 16 7 1.0330 -4.7220 -2.3091 17 6 2.2754 -4.9278 -2.7892 18 8 3.2044 -5.0888 -2.0221 19 6 2.5082 -4.9579 -4.2489 20 6 1.4660 -5.2837 -5.1183 21 6 1.6887 -5.3048 -6.4796 22 6 2.9445 -5.0146 -6.9829 23 6 3.1817 -5.0449 -8.4708 24 9 3.5816 -6.3297 -8.8533 25 6 3.9833 -4.6965 -6.1262 26 6 3.7726 -4.6662 -4.7632 27 6 0.8811 -4.6392 -0.8739 28 1 0.9796 -5.6356 -0.4431 29 6 1.9554 -3.7083 -0.2774 30 1 -0.4850 0.8402 -0.0004 31 1 -0.5133 -1.9447 -1.0608 32 1 -0.5742 -2.1764 0.7075 33 1 -1.0110 -2.7606 -2.7751 34 1 -2.1089 -4.0487 -3.3107 35 1 0.3314 -4.0877 -4.1593 36 1 -0.3754 -5.6000 -3.5595 37 1 0.4864 -5.5143 -4.7265 38 1 0.8821 -5.5523 -7.1538 39 1 2.2609 -4.7809 -8.9909 40 1 3.9626 -4.3294 -8.7288 41 1 4.9612 -4.4714 -6.5253 42 1 4.5843 -4.4181 -4.0954 43 1 2.8172 -3.6570 -0.9427 44 1 2.2620 -4.0703 0.7040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083287414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:45 Heat of formation + Delta-G solvation = -41.616116 kcal Electronic energy + Delta-G solvation = -29815.360412 eV Core-core repulsion = 25649.067674 eV Total energy + Delta-G solvation = -4166.292738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.57718 -42.50427 -40.46897 -39.29200 -37.67267 -36.45754 -34.58738 -33.24983 -32.24703 -31.54425 -29.69902 -29.33196 -27.67716 -26.49353 -25.23248 -23.82578 -23.39323 -22.50196 -21.34396 -20.37984 -19.21320 -18.52497 -18.34283 -17.57672 -17.20837 -17.08076 -16.89270 -16.74271 -16.37772 -16.30110 -15.92307 -15.72908 -15.49746 -15.25361 -15.05114 -14.57436 -14.29736 -14.18748 -14.05333 -13.81818 -13.64533 -13.37099 -13.04557 -12.85350 -12.79323 -12.48257 -12.36266 -12.17422 -12.11069 -11.97963 -11.87969 -11.79025 -11.56636 -10.99203 -10.76633 -10.44636 -10.03075 -9.90474 -9.62153 -8.93905 -7.92493 -5.27360 -0.28044 0.33103 1.40538 1.41678 1.51553 1.57492 1.79945 2.42973 2.65564 2.78145 3.19490 3.24994 3.46266 3.58738 3.61119 3.68786 3.74284 3.82801 3.94300 4.05366 4.08216 4.15240 4.18266 4.34264 4.35076 4.40735 4.50914 4.54186 4.64284 4.68403 4.80691 4.83975 4.93938 4.97439 5.00600 5.18086 5.28683 5.36690 5.39494 5.44739 5.53661 5.61228 5.82194 6.12568 6.14495 6.37868 6.98703 7.04741 7.69419 8.31852 9.17179 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.003740 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.464554 B = 7484.150443 C = 8416.204944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.056 4.056 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.619 5.619 10 C 0.162 3.838 11 C 0.086 3.914 12 H 0.130 0.870 13 O -0.370 6.370 14 C 0.047 3.953 15 C 0.058 3.942 16 N -0.582 5.582 17 C 0.542 3.458 18 O -0.565 6.565 19 C -0.142 4.142 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.117 4.117 23 C 0.102 3.898 24 F -0.227 7.227 25 C -0.109 4.109 26 C -0.084 4.084 27 C 0.121 3.879 28 H 0.094 0.906 29 C 0.114 3.886 30 H 0.249 0.751 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.028 0.972 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -12.496 -18.468 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.249 4.249 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.036 3.964 11 C 0.027 3.973 12 H 0.148 0.852 13 O -0.287 6.287 14 C -0.029 4.029 15 C -0.064 4.064 16 N -0.313 5.313 17 C 0.333 3.667 18 O -0.446 6.446 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.118 4.118 23 C 0.048 3.952 24 F -0.208 7.208 25 C -0.127 4.127 26 C -0.103 4.103 27 C 0.016 3.984 28 H 0.112 0.888 29 C -0.012 4.012 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.171 0.829 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.198 0.802 38 H 0.186 0.814 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.077 0.923 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.156 -12.466 -17.970 21.901 hybrid contribution 1.042 1.390 0.798 1.912 sum -0.114 -11.076 -17.173 20.435 Atomic orbital electron populations 1.70175 1.06038 1.25434 1.57527 1.25591 0.96638 1.00668 1.02043 0.85107 0.77812 0.79288 0.77436 1.21214 1.21467 1.19748 1.19327 0.91372 0.83959 1.42987 0.91074 1.44464 1.02165 1.01983 1.86003 1.21459 0.84089 0.91895 0.98918 1.22711 0.86018 0.95637 0.92930 0.85237 1.86898 1.37227 1.86676 1.17897 1.22673 0.99695 0.97826 0.82754 1.23010 0.87981 1.02788 0.92575 1.46662 1.08130 1.70459 1.06075 1.18965 0.82213 0.76314 0.89201 1.90682 1.43497 1.50672 1.59735 1.19962 0.96630 1.06281 0.91605 1.22807 1.00113 0.96746 0.93720 1.21475 0.97371 0.97987 0.95073 1.20820 0.94464 0.99488 0.97035 1.21095 1.04231 0.80408 0.89475 1.92788 1.92953 1.43023 1.92072 1.21245 1.00285 0.99321 0.91836 1.21276 0.95650 0.97042 0.96343 1.21499 0.96734 0.99410 0.80757 0.88829 1.21991 0.96522 0.84904 0.97773 0.94136 0.95366 0.96725 0.95362 0.82922 0.86882 0.86596 0.80150 0.81390 0.86673 0.87842 0.83286 0.86471 0.92264 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 10.31 21.65 0.22 -56.77 16 2 C -0.06 -3.25 5.47 84.86 0.46 -2.79 16 3 Si 0.98 46.91 29.56 68.60 2.03 48.94 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -14.68 10.24 84.04 0.86 -13.82 16 8 H 0.07 4.19 7.84 -2.91 -0.02 4.16 16 9 N -0.62 -33.66 3.39 -696.31 -2.36 -36.01 16 10 C 0.16 8.15 5.03 86.63 0.44 8.58 16 11 C 0.09 3.28 3.83 30.81 0.12 3.40 16 12 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 13 O -0.37 -12.24 10.24 -146.21 -1.50 -13.74 16 14 C 0.05 1.25 6.72 71.64 0.48 1.73 16 15 C 0.06 1.34 4.57 86.32 0.39 1.73 16 16 N -0.58 -19.19 3.09 -811.57 -2.51 -21.69 16 17 C 0.54 19.20 6.88 86.79 0.60 19.79 16 18 O -0.57 -24.17 13.76 -3.87 -0.05 -24.23 16 19 C -0.14 -3.94 5.53 -20.09 -0.11 -4.05 16 20 C -0.12 -2.20 7.50 22.53 0.17 -2.03 16 21 C -0.10 -1.47 9.68 22.23 0.22 -1.25 16 22 C -0.12 -1.86 5.60 -19.81 -0.11 -1.97 16 23 C 0.10 1.06 7.67 71.23 0.55 1.61 16 24 F -0.23 -3.83 17.34 44.97 0.78 -3.05 16 25 C -0.11 -2.15 9.68 22.23 0.22 -1.94 16 26 C -0.08 -2.26 9.59 22.53 0.22 -2.04 16 27 C 0.12 4.54 3.36 45.65 0.15 4.70 16 28 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 29 C 0.11 5.34 6.29 86.70 0.54 5.89 16 30 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 31 H 0.03 1.57 5.67 -2.38 -0.01 1.56 16 32 H 0.01 0.82 7.58 -2.39 -0.02 0.81 16 33 H 0.03 0.96 6.82 -2.38 -0.02 0.94 16 34 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.11 2.37 5.03 -2.38 -0.01 2.35 16 36 H 0.12 1.77 6.68 -2.39 -0.02 1.76 16 37 H 0.18 2.50 3.65 -3.57 -0.01 2.49 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.12 0.56 8.08 -2.39 -0.02 0.54 16 40 H 0.10 0.72 8.08 -2.38 -0.02 0.70 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.12 3.49 7.84 -2.91 -0.02 3.46 16 43 H 0.06 3.03 5.01 -2.39 -0.01 3.02 16 44 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -79.40 345.93 2.85 -76.55 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.04 Total: 12.47 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 5.19 Total: 17.53 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -4.64 Total: -114.48 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.55 Total: -37.97 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.40 2.85 -76.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083287414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.937 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds