Wall clock time and date at job start Tue Mar 31 2020 18:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46947 * 274.14015 * 3 2 1 5 5 H 1.48502 * 109.46906 * 34.13754 * 3 2 1 6 6 H 1.48499 * 109.47379 * 154.13837 * 3 2 1 7 7 C 1.38806 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00285 * 170.42143 * 7 2 1 9 9 N 1.36943 * 120.00101 * 350.42338 * 7 2 1 10 10 C 1.47016 * 125.65188 * 169.94514 * 9 7 2 11 11 C 1.54327 * 107.27372 * 178.97702 * 10 9 7 12 12 H 1.08998 * 110.71860 * 96.34753 * 11 10 9 13 13 N 1.46497 * 110.71645 * 219.44213 * 11 10 9 14 14 C 1.34773 * 120.00285 * 273.53892 * 13 11 10 15 15 O 1.21284 * 119.99718 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00434 * 180.02562 * 14 13 11 17 17 H 1.09006 * 110.26872 * 302.08033 * 16 14 13 18 18 C 1.54340 * 110.30517 * 180.02562 * 16 14 13 19 19 C 1.54347 * 102.38985 * 267.33373 * 18 16 14 20 20 C 1.51377 * 105.17055 * 333.64072 * 19 18 16 21 21 C 1.38466 * 130.36850 * 197.16962 * 20 19 18 22 22 C 1.38321 * 120.19784 * 180.02562 * 21 20 19 23 23 F 1.35099 * 120.06122 * 180.02562 * 22 21 20 24 24 C 1.38477 * 119.87604 * 359.97438 * 22 21 20 25 25 C 1.38054 * 119.91328 * 0.02562 * 24 22 21 26 26 C 1.38227 * 109.75724 * 17.19680 * 20 19 18 27 27 C 1.55155 * 102.93853 * 337.80318 * 11 10 9 28 28 H 1.08997 * 111.00049 * 153.57671 * 27 11 10 29 29 O 1.42900 * 111.00472 * 277.42913 * 27 11 10 30 30 C 1.47426 * 125.64659 * 349.98223 * 9 7 2 31 31 H 0.97001 * 120.00271 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.88481 * 59.55333 * 10 9 7 33 33 H 1.09005 * 110.00994 * 298.46378 * 10 9 7 34 34 H 0.97000 * 120.00077 * 93.54890 * 13 11 10 35 35 H 1.09002 * 110.82629 * 149.10912 * 18 16 14 36 36 H 1.08995 * 110.82289 * 25.55430 * 18 16 14 37 37 H 1.09005 * 110.30533 * 214.71952 * 19 18 16 38 38 H 1.08998 * 110.38924 * 92.61164 * 19 18 16 39 39 H 1.08001 * 119.89786 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.04337 * 179.73300 * 24 22 21 41 41 H 1.08007 * 119.87772 * 180.02562 * 25 24 22 42 42 H 0.96706 * 113.99956 * 180.02562 * 29 27 11 43 43 H 1.08999 * 110.36943 * 322.93793 * 30 9 7 44 44 H 1.09003 * 110.36493 * 85.14153 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4101 2.0969 -1.3964 5 1 1.4940 2.6258 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9021 -3.7263 0.0189 11 6 0.7933 -4.7375 0.3791 12 1 0.2749 -5.0769 -0.5176 13 7 1.3489 -5.8750 1.1163 14 6 1.8551 -6.9295 0.4468 15 8 1.8511 -6.9365 -0.7660 16 6 2.4261 -8.0999 1.2051 17 1 3.2324 -7.7687 1.8597 18 6 2.9407 -9.1743 0.2238 19 6 1.7155 -10.1011 0.0750 20 6 0.9348 -9.9352 1.3613 21 6 -0.0545 -10.7277 1.9185 22 6 -0.6350 -10.3720 3.1226 23 9 -1.5998 -11.1475 3.6640 24 6 -0.2248 -9.2201 3.7725 25 6 0.7617 -8.4302 3.2168 26 6 1.3431 -8.7853 2.0107 27 6 -0.1540 -3.9065 1.2843 28 1 -1.1721 -4.2935 1.2437 29 8 0.3248 -3.8705 2.6303 30 6 -0.0652 -2.5072 0.6258 31 1 -0.4850 0.8400 -0.0004 32 1 2.7572 -3.8623 0.6810 33 1 2.2097 -3.8670 -1.0173 34 1 1.3523 -5.8693 2.0863 35 1 3.7861 -9.7149 0.6495 36 1 3.2075 -8.7280 -0.7342 37 1 2.0362 -11.1363 -0.0419 38 1 1.1092 -9.7951 -0.7775 39 1 -0.3739 -11.6262 1.4114 40 1 -0.6792 -8.9376 4.7107 41 1 1.0815 -7.5321 3.7244 42 1 -0.2351 -3.3627 3.2335 43 1 -0.3135 -1.7309 1.3496 44 1 -0.7306 -2.4484 -0.2355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083646472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:34 Heat of formation + Delta-G solvation = -75.906853 kcal Electronic energy + Delta-G solvation = -28944.011362 eV Core-core repulsion = 24776.231666 eV Total energy + Delta-G solvation = -4167.779696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.13469 -40.93253 -39.16924 -37.85160 -35.42878 -34.77526 -34.00508 -32.08416 -31.45911 -29.03432 -28.80373 -27.94788 -26.81215 -24.49882 -23.28740 -22.34367 -21.38240 -20.70143 -20.03685 -19.69512 -17.72299 -17.28594 -16.99710 -16.91809 -16.71249 -15.94220 -15.77624 -15.36690 -14.93523 -14.71008 -14.67653 -14.20061 -13.95352 -13.85998 -13.64320 -13.16003 -13.04571 -12.89063 -12.66488 -12.53453 -12.20191 -11.93357 -11.77217 -11.46552 -11.36100 -11.19534 -11.06822 -11.00284 -10.84214 -10.64477 -10.44593 -10.14809 -9.88200 -9.85458 -9.31401 -9.20806 -8.77112 -8.63469 -8.61555 -6.82911 -5.78965 -3.10426 0.81865 0.94132 2.73321 3.15904 3.37958 3.42751 3.44380 3.47202 3.82365 4.17546 4.24286 4.46569 4.52989 4.61911 4.65477 4.80473 4.91108 4.95883 5.11437 5.30785 5.32293 5.33515 5.44708 5.45373 5.46883 5.63305 5.69661 5.71669 5.81521 5.86874 5.88867 5.92653 6.01537 6.07605 6.22867 6.24855 6.52531 6.59602 6.70982 6.92255 7.25311 7.39181 7.69513 7.77314 8.04038 8.21735 8.41639 9.14673 9.76652 10.42662 11.34580 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.002799 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.621844 B =10002.212622 C =10862.139750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.132 3.868 11 C 0.144 3.856 12 H 0.100 0.900 13 N -0.704 5.704 14 C 0.521 3.479 15 O -0.538 6.538 16 C -0.070 4.070 17 H 0.109 0.891 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.056 4.056 21 C -0.146 4.146 22 C 0.102 3.898 23 F -0.140 7.140 24 C -0.153 4.153 25 C -0.068 4.068 26 C -0.103 4.103 27 C 0.067 3.933 28 H 0.060 0.940 29 O -0.561 6.561 30 C 0.149 3.851 31 H 0.253 0.747 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.406 0.594 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.379 0.621 43 H 0.077 0.923 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -21.343 7.526 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.039 3.961 12 H 0.117 0.883 13 N -0.355 5.355 14 C 0.306 3.694 15 O -0.415 6.415 16 C -0.092 4.092 17 H 0.127 0.873 18 C -0.143 4.143 19 C -0.120 4.120 20 C -0.056 4.056 21 C -0.165 4.165 22 C 0.082 3.918 23 F -0.119 7.119 24 C -0.172 4.172 25 C -0.086 4.086 26 C -0.103 4.103 27 C 0.006 3.994 28 H 0.078 0.922 29 O -0.367 6.367 30 C 0.023 3.977 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.242 0.758 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.226 0.774 43 H 0.095 0.905 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.593 -21.502 6.395 22.441 hybrid contribution -0.354 1.205 0.850 1.517 sum 0.238 -20.297 7.245 21.553 Atomic orbital electron populations 1.69915 1.04970 1.25228 1.56891 1.24795 0.95662 0.97808 1.02183 0.86098 0.78745 0.83360 0.77544 1.21594 1.21628 1.20601 1.19031 0.91209 0.82624 1.42302 0.90591 1.44261 1.09030 0.99753 1.79123 1.21588 0.94365 0.85528 0.97991 1.22124 0.94880 0.84783 0.94358 0.88256 1.45802 1.61069 1.17771 1.10812 1.20220 0.77988 0.83106 0.88052 1.90689 1.56608 1.80543 1.13677 1.20815 0.96659 0.94671 0.97009 0.87285 1.22255 0.97003 0.94643 1.00373 1.21125 0.95801 1.00699 0.94362 1.20473 0.94796 0.94047 0.96311 1.20519 0.98589 1.01931 0.95430 1.17525 0.89477 0.91119 0.93631 1.91501 1.60838 1.73985 1.85526 1.21011 0.99726 0.94689 1.01786 1.20529 0.94796 0.99201 0.94095 1.20290 0.98585 0.96285 0.95152 1.23583 0.94683 0.98669 0.82415 0.92239 1.86240 1.55156 1.76230 1.19093 1.22060 0.86924 0.91067 0.97643 0.93702 0.95349 0.95367 0.75838 0.90190 0.88227 0.90148 0.89148 0.84851 0.84346 0.84724 0.77398 0.90468 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.68 55.49 0.59 -25.93 16 2 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 3 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.26 10.24 -15.06 -0.15 -6.41 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 N -0.60 -15.20 3.39 -170.07 -0.58 -15.78 16 10 C 0.13 2.91 6.99 -3.07 -0.02 2.89 16 11 C 0.14 2.61 3.12 -66.10 -0.21 2.40 16 12 H 0.10 1.88 7.69 -51.93 -0.40 1.48 16 13 N -0.70 -10.53 5.05 -52.03 -0.26 -10.79 16 14 C 0.52 7.64 7.15 -10.99 -0.08 7.56 16 15 O -0.54 -9.68 15.19 5.55 0.08 -9.59 16 16 C -0.07 -0.75 3.26 -91.89 -0.30 -1.05 16 17 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -0.99 6.38 -25.32 -0.16 -1.16 16 19 C -0.08 -0.76 6.76 -26.85 -0.18 -0.94 16 20 C -0.06 -0.57 6.14 -104.21 -0.64 -1.21 16 21 C -0.15 -1.43 10.02 -39.47 -0.40 -1.83 16 22 C 0.10 1.05 7.30 -39.46 -0.29 0.76 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 24 C -0.15 -1.43 10.03 -39.56 -0.40 -1.83 16 25 C -0.07 -0.64 9.87 -39.55 -0.39 -1.03 16 26 C -0.10 -1.06 5.41 -104.19 -0.56 -1.62 16 27 C 0.07 1.17 4.28 -24.59 -0.11 1.07 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 O -0.56 -8.90 12.23 -35.23 -0.43 -9.33 16 30 C 0.15 3.43 5.16 -2.53 -0.01 3.41 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.41 5.41 7.21 -40.82 -0.29 5.11 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.09 6.97 -51.93 -0.36 0.73 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.13 1.04 7.87 -52.48 -0.41 0.63 16 42 H 0.38 4.71 9.12 45.56 0.42 5.12 16 43 H 0.08 1.94 6.94 -51.93 -0.36 1.58 16 44 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -32.77 365.21 -9.24 -42.01 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.18 Total: 7.72 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.99 Total: 0.69 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.25 Total: -52.50 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.35 Total: -18.92 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.77 -9.24 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083646472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.892 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds