Wall clock time and date at job start Tue Mar 31 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46947 * 274.14015 * 3 2 1 5 5 H 1.48502 * 109.46906 * 34.13754 * 3 2 1 6 6 H 1.48499 * 109.47379 * 154.13837 * 3 2 1 7 7 C 1.38806 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00285 * 170.42143 * 7 2 1 9 9 N 1.36943 * 120.00101 * 350.42338 * 7 2 1 10 10 C 1.47016 * 125.65188 * 169.94514 * 9 7 2 11 11 C 1.54327 * 107.27372 * 178.97702 * 10 9 7 12 12 H 1.08998 * 110.71860 * 96.34753 * 11 10 9 13 13 N 1.46497 * 110.71645 * 219.44213 * 11 10 9 14 14 C 1.34773 * 120.00285 * 273.53892 * 13 11 10 15 15 O 1.21284 * 119.99718 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00434 * 180.02562 * 14 13 11 17 17 H 1.09006 * 110.26872 * 302.08033 * 16 14 13 18 18 C 1.54340 * 110.30517 * 180.02562 * 16 14 13 19 19 C 1.54347 * 102.38985 * 267.33373 * 18 16 14 20 20 C 1.51377 * 105.17055 * 333.64072 * 19 18 16 21 21 C 1.38466 * 130.36850 * 197.16962 * 20 19 18 22 22 C 1.38321 * 120.19784 * 180.02562 * 21 20 19 23 23 F 1.35099 * 120.06122 * 180.02562 * 22 21 20 24 24 C 1.38477 * 119.87604 * 359.97438 * 22 21 20 25 25 C 1.38054 * 119.91328 * 0.02562 * 24 22 21 26 26 C 1.38227 * 109.75724 * 17.19680 * 20 19 18 27 27 C 1.55155 * 102.93853 * 337.80318 * 11 10 9 28 28 H 1.08997 * 111.00049 * 153.57671 * 27 11 10 29 29 O 1.42900 * 111.00472 * 277.42913 * 27 11 10 30 30 C 1.47426 * 125.64659 * 349.98223 * 9 7 2 31 31 H 0.97001 * 120.00271 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.88481 * 59.55333 * 10 9 7 33 33 H 1.09005 * 110.00994 * 298.46378 * 10 9 7 34 34 H 0.97000 * 120.00077 * 93.54890 * 13 11 10 35 35 H 1.09002 * 110.82629 * 149.10912 * 18 16 14 36 36 H 1.08995 * 110.82289 * 25.55430 * 18 16 14 37 37 H 1.09005 * 110.30533 * 214.71952 * 19 18 16 38 38 H 1.08998 * 110.38924 * 92.61164 * 19 18 16 39 39 H 1.08001 * 119.89786 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.04337 * 179.73300 * 24 22 21 41 41 H 1.08007 * 119.87772 * 180.02562 * 25 24 22 42 42 H 0.96706 * 113.99956 * 180.02562 * 29 27 11 43 43 H 1.08999 * 110.36943 * 322.93793 * 30 9 7 44 44 H 1.09003 * 110.36493 * 85.14153 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4101 2.0969 -1.3964 5 1 1.4940 2.6258 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9021 -3.7263 0.0189 11 6 0.7933 -4.7375 0.3791 12 1 0.2749 -5.0769 -0.5176 13 7 1.3489 -5.8750 1.1163 14 6 1.8551 -6.9295 0.4468 15 8 1.8511 -6.9365 -0.7660 16 6 2.4261 -8.0999 1.2051 17 1 3.2324 -7.7687 1.8597 18 6 2.9407 -9.1743 0.2238 19 6 1.7155 -10.1011 0.0750 20 6 0.9348 -9.9352 1.3613 21 6 -0.0545 -10.7277 1.9185 22 6 -0.6350 -10.3720 3.1226 23 9 -1.5998 -11.1475 3.6640 24 6 -0.2248 -9.2201 3.7725 25 6 0.7617 -8.4302 3.2168 26 6 1.3431 -8.7853 2.0107 27 6 -0.1540 -3.9065 1.2843 28 1 -1.1721 -4.2935 1.2437 29 8 0.3248 -3.8705 2.6303 30 6 -0.0652 -2.5072 0.6258 31 1 -0.4850 0.8400 -0.0004 32 1 2.7572 -3.8623 0.6810 33 1 2.2097 -3.8670 -1.0173 34 1 1.3523 -5.8693 2.0863 35 1 3.7861 -9.7149 0.6495 36 1 3.2075 -8.7280 -0.7342 37 1 2.0362 -11.1363 -0.0419 38 1 1.1092 -9.7951 -0.7775 39 1 -0.3739 -11.6262 1.4114 40 1 -0.6792 -8.9376 4.7107 41 1 1.0815 -7.5321 3.7244 42 1 -0.2351 -3.3627 3.2335 43 1 -0.3135 -1.7309 1.3496 44 1 -0.7306 -2.4484 -0.2355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083646472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:33 Heat of formation + Delta-G solvation = -98.210159 kcal Electronic energy + Delta-G solvation = -28944.978506 eV Core-core repulsion = 24776.231666 eV Total energy + Delta-G solvation = -4168.746840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.91516 -41.86279 -40.38544 -39.22428 -36.38237 -36.23968 -35.42742 -33.68000 -32.54861 -30.42909 -29.74401 -29.22261 -28.24647 -26.35276 -24.05477 -23.40049 -22.38542 -22.14089 -21.45437 -20.90410 -19.22666 -18.43125 -18.24964 -17.97403 -17.67250 -16.93215 -16.78165 -16.67691 -16.58196 -15.94448 -15.85612 -15.46874 -15.07458 -14.98325 -14.65501 -14.54889 -14.37855 -14.19298 -13.86934 -13.69108 -13.34500 -13.16890 -12.99927 -12.85465 -12.74714 -12.57742 -12.31238 -12.20161 -12.12012 -11.94094 -11.92188 -11.86878 -11.78576 -11.08063 -10.83428 -10.74967 -10.09677 -9.91445 -9.44288 -8.88575 -7.91296 -5.25727 0.05903 0.23724 1.45928 1.46561 1.56564 1.59486 2.08324 2.48273 2.57749 3.08598 3.17266 3.29164 3.43402 3.47805 3.59948 3.79329 3.82712 3.93955 3.95673 4.01673 4.16730 4.25883 4.28641 4.35480 4.47299 4.62725 4.69981 4.73614 4.74073 4.86745 4.94715 4.97404 5.03794 5.11061 5.17038 5.21569 5.33243 5.37114 5.38554 5.51137 5.52088 5.60997 5.88098 6.15488 6.59325 6.88449 7.05577 7.25728 7.70619 8.36079 9.20092 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.002799 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.621844 B =10002.212622 C =10862.139750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.133 3.867 11 C 0.155 3.845 12 H 0.091 0.909 13 N -0.695 5.695 14 C 0.519 3.481 15 O -0.575 6.575 16 C -0.063 4.063 17 H 0.132 0.868 18 C -0.104 4.104 19 C -0.082 4.082 20 C -0.064 4.064 21 C -0.151 4.151 22 C 0.088 3.912 23 F -0.146 7.146 24 C -0.154 4.154 25 C -0.068 4.068 26 C -0.112 4.112 27 C 0.093 3.907 28 H 0.093 0.907 29 O -0.559 6.559 30 C 0.151 3.849 31 H 0.250 0.750 32 H 0.027 0.973 33 H 0.007 0.993 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.397 0.603 43 H 0.053 0.947 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -22.493 9.280 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.341 5.341 10 C 0.006 3.994 11 C 0.049 3.951 12 H 0.109 0.891 13 N -0.346 5.346 14 C 0.306 3.694 15 O -0.455 6.455 16 C -0.084 4.084 17 H 0.150 0.850 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.065 4.065 21 C -0.170 4.170 22 C 0.069 3.931 23 F -0.125 7.125 24 C -0.172 4.172 25 C -0.086 4.086 26 C -0.112 4.112 27 C 0.032 3.968 28 H 0.110 0.890 29 O -0.368 6.368 30 C 0.025 3.975 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.255 0.745 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.247 0.753 43 H 0.071 0.929 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.079 -22.681 8.191 24.139 hybrid contribution -0.498 1.541 0.286 1.644 sum 0.581 -21.140 8.477 22.784 Atomic orbital electron populations 1.70096 1.06141 1.25674 1.57428 1.25589 0.96584 1.00827 1.02104 0.85087 0.77838 0.79160 0.77330 1.21509 1.21409 1.19633 1.19335 0.91485 0.84110 1.42564 0.91000 1.44542 1.10024 1.00352 1.79199 1.21631 0.95673 0.85353 0.96696 1.21744 0.93539 0.85078 0.94757 0.89119 1.45674 1.60971 1.16841 1.11159 1.20979 0.76940 0.83648 0.87831 1.90679 1.57870 1.81314 1.15600 1.20826 0.97241 0.93142 0.97191 0.85001 1.22293 0.98038 0.94450 0.99379 1.21123 0.95364 1.01962 0.93401 1.20610 0.94998 0.94245 0.96599 1.20686 0.98412 1.02432 0.95434 1.17753 0.89677 0.91610 0.94076 1.91486 1.61134 1.74226 1.85634 1.21252 0.99489 0.94162 1.02343 1.20751 0.94379 0.99715 0.93755 1.20337 0.98803 0.96413 0.95685 1.23214 0.96118 0.94696 0.82728 0.88951 1.86205 1.55948 1.76419 1.18193 1.21965 0.85210 0.93936 0.96365 0.94038 0.95534 0.97523 0.74519 0.87442 0.90080 0.87882 0.90764 0.83616 0.82577 0.82887 0.75300 0.92878 0.97391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.36 10.68 21.65 0.23 -55.13 16 2 C -0.06 -3.24 5.40 84.86 0.46 -2.78 16 3 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.25 -14.05 10.24 84.03 0.86 -13.19 16 8 H 0.07 4.04 7.85 -2.91 -0.02 4.01 16 9 N -0.61 -32.04 3.39 -691.99 -2.35 -34.39 16 10 C 0.13 5.95 6.99 86.73 0.61 6.56 16 11 C 0.16 5.55 3.12 46.18 0.14 5.70 16 12 H 0.09 3.44 7.69 -2.39 -0.02 3.42 16 13 N -0.69 -19.67 5.05 -436.93 -2.21 -21.87 16 14 C 0.52 14.62 7.15 87.66 0.63 15.24 16 15 O -0.58 -20.76 15.19 -3.04 -0.05 -20.80 16 16 C -0.06 -1.21 3.26 -11.62 -0.04 -1.25 16 17 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 18 C -0.10 -1.78 6.38 31.51 0.20 -1.58 16 19 C -0.08 -1.36 6.76 30.52 0.21 -1.15 16 20 C -0.06 -1.18 6.14 -19.60 -0.12 -1.30 16 21 C -0.15 -2.69 10.02 22.34 0.22 -2.46 16 22 C 0.09 1.64 7.30 22.35 0.16 1.80 16 23 F -0.15 -2.95 17.27 44.97 0.78 -2.17 16 24 C -0.15 -2.47 10.03 22.28 0.22 -2.25 16 25 C -0.07 -1.08 9.87 22.29 0.22 -0.86 16 26 C -0.11 -2.03 5.41 -19.58 -0.11 -2.14 16 27 C 0.09 3.14 4.28 31.98 0.14 3.27 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 O -0.56 -16.32 12.23 -148.98 -1.82 -18.14 16 30 C 0.15 7.05 5.16 86.85 0.45 7.50 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 32 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 33 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.42 9.97 7.21 -92.71 -0.67 9.30 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.73 6.97 -2.39 -0.02 1.71 16 37 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.15 1.80 7.87 -2.91 -0.02 1.77 16 42 H 0.40 8.75 9.12 -74.05 -0.68 8.07 16 43 H 0.05 2.71 6.94 -2.39 -0.02 2.69 16 44 H 0.01 0.42 8.07 -2.39 -0.02 0.40 16 Total: -1.00 -72.35 365.21 0.57 -71.77 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.29 Total: 22.07 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.25 Total: 11.11 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.32 Total: -111.39 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -1.87 Total: -38.94 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.35 0.57 -71.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083646472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.436 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds