Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48498 * 109.47246 * 270.00338 * 3 2 1 5 5 H 1.48503 * 109.46872 * 30.00231 * 3 2 1 6 6 H 1.48498 * 109.47461 * 149.99830 * 3 2 1 7 7 C 1.38818 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 179.97438 * 7 2 1 9 9 N 1.36926 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.47474 * 125.63025 * 179.97438 * 9 7 2 11 11 C 1.54907 * 104.81131 * 204.06843 * 10 9 7 12 12 H 1.09004 * 111.00344 * 81.14059 * 11 10 9 13 13 N 1.46500 * 111.00267 * 204.94827 * 11 10 9 14 14 C 1.34782 * 119.99896 * 270.42048 * 13 11 10 15 15 O 1.21274 * 120.00157 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99716 * 180.02562 * 14 13 11 17 17 C 1.50701 * 115.55135 * 325.67122 * 16 14 13 18 18 C 1.38221 * 120.01668 * 98.57028 * 17 16 14 19 19 C 1.38222 * 120.02550 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.05504 * 359.97438 * 19 18 17 21 21 C 1.38185 * 120.02371 * 0.03883 * 20 19 18 22 22 C 1.38447 * 120.01140 * 278.29875 * 17 16 14 23 23 F 1.35102 * 120.02382 * 359.97438 * 22 17 16 24 24 C 1.53002 * 117.49878 * 180.02562 * 16 14 13 25 25 C 1.52994 * 60.03261 * 252.49616 * 24 16 14 26 26 C 1.55150 * 101.61992 * 323.04535 * 11 10 9 27 27 H 1.08996 * 110.72415 * 153.84888 * 26 11 10 28 28 O 1.42903 * 110.72031 * 276.94119 * 26 11 10 29 29 C 1.47024 * 125.65171 * 359.97330 * 9 7 2 30 30 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.34413 * 85.25267 * 10 9 7 32 32 H 1.08999 * 110.40023 * 322.91880 * 10 9 7 33 33 H 0.96993 * 119.99921 * 90.42484 * 13 11 10 34 34 H 1.08000 * 119.98332 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.96759 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99233 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.01111 * 179.97438 * 21 20 19 38 38 H 1.08998 * 117.49839 * 0.02562 * 24 16 14 39 39 H 1.08999 * 117.49828 * 144.99185 * 24 16 14 40 40 H 1.09005 * 117.50286 * 107.49895 * 25 24 16 41 41 H 1.09001 * 117.50134 * 252.52041 * 25 24 16 42 42 H 0.96699 * 114.00111 * 179.97438 * 28 26 11 43 43 H 1.09005 * 109.87861 * 59.56126 * 29 9 7 44 44 H 1.08999 * 110.01306 * 298.46686 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9342 -3.7313 -0.0016 11 6 0.8515 -4.6560 -0.6119 12 1 0.8554 -4.5967 -1.7004 13 7 1.0291 -6.0394 -0.1637 14 6 1.8111 -6.8810 -0.8685 15 8 2.3681 -6.4930 -1.8735 16 6 1.9932 -8.3042 -0.4077 17 6 2.0042 -8.5076 1.0855 18 6 0.8592 -8.9303 1.7341 19 6 0.8692 -9.1175 3.1036 20 6 2.0244 -8.8827 3.8261 21 6 3.1702 -8.4598 3.1799 22 6 3.1628 -8.2766 1.8073 23 9 4.2842 -7.8692 1.1735 24 6 2.8936 -9.2098 -1.2504 25 6 1.3770 -9.4104 -1.2678 26 6 -0.4484 -4.0441 -0.0263 27 1 -1.2989 -4.2514 -0.6757 28 8 -0.6898 -4.5377 1.2929 29 6 -0.1374 -2.5328 0.0006 30 1 -0.4850 0.8400 0.0004 31 1 2.1684 -4.0421 1.0166 32 1 2.8329 -3.7408 -0.6183 33 1 0.5838 -6.3496 0.6402 34 1 -0.0433 -9.1152 1.1706 35 1 -0.0261 -9.4474 3.6095 36 1 2.0312 -9.0296 4.8961 37 1 4.0723 -8.2760 3.7445 38 1 3.3545 -8.7761 -2.1378 39 1 3.4935 -9.9527 -0.7248 40 1 0.8396 -9.1087 -2.1669 41 1 0.9790 -10.2851 -0.7533 42 1 -1.4909 -4.1853 1.7041 43 1 -0.5581 -2.0521 -0.8827 44 1 -0.5560 -2.0841 0.9014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083909714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = -43.285795 kcal Electronic energy + Delta-G solvation = -29512.401851 eV Core-core repulsion = 25346.036710 eV Total energy + Delta-G solvation = -4166.365141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.91242 -40.43308 -38.98208 -38.04124 -36.29300 -34.82444 -33.94280 -31.68076 -31.03731 -30.54190 -28.54349 -27.19457 -25.09041 -24.10303 -23.31584 -22.37434 -22.11780 -20.50246 -20.08136 -19.52926 -18.06725 -17.37249 -17.02023 -16.77328 -16.36486 -15.85733 -15.53261 -15.32091 -14.92370 -14.81096 -14.42923 -14.27962 -14.06995 -13.91881 -13.30660 -13.18414 -13.03459 -12.68949 -12.60094 -12.52264 -12.19919 -12.08537 -11.70608 -11.45119 -11.28170 -10.95551 -10.85891 -10.79839 -10.51009 -10.48513 -10.41072 -10.10876 -9.86203 -9.78982 -9.32001 -9.12338 -8.79528 -8.67980 -8.60646 -6.85549 -5.73275 -3.05870 0.90473 0.98521 2.61020 3.25112 3.38815 3.41668 3.46541 3.48746 3.64886 4.11919 4.21280 4.47792 4.54000 4.55775 4.66630 4.75337 4.77974 4.89434 5.07161 5.14898 5.30743 5.37002 5.39822 5.46295 5.56185 5.63454 5.73382 5.74054 5.83493 5.88529 5.93731 5.97704 6.07402 6.09871 6.16428 6.24020 6.64286 6.66112 6.69930 6.97066 7.34240 7.45771 7.74137 7.85101 8.08007 8.21321 8.48619 9.19852 9.79777 10.44587 11.39135 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.003344 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.047746 B = 8370.898829 C = 8562.992198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.132 3.868 11 C 0.138 3.862 12 H 0.103 0.897 13 N -0.700 5.700 14 C 0.551 3.449 15 O -0.538 6.538 16 C -0.127 4.127 17 C -0.088 4.088 18 C -0.080 4.080 19 C -0.128 4.128 20 C -0.088 4.088 21 C -0.154 4.154 22 C 0.117 3.883 23 F -0.131 7.131 24 C -0.131 4.131 25 C -0.141 4.141 26 C 0.068 3.932 27 H 0.061 0.939 28 O -0.567 6.567 29 C 0.155 3.845 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.407 0.593 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.379 0.621 43 H 0.055 0.945 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -22.927 5.264 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.005 3.995 11 C 0.033 3.967 12 H 0.121 0.879 13 N -0.350 5.350 14 C 0.336 3.664 15 O -0.415 6.415 16 C -0.130 4.130 17 C -0.089 4.089 18 C -0.098 4.098 19 C -0.147 4.147 20 C -0.106 4.106 21 C -0.173 4.173 22 C 0.097 3.903 23 F -0.109 7.109 24 C -0.168 4.168 25 C -0.178 4.178 26 C 0.008 3.992 27 H 0.078 0.922 28 O -0.373 6.373 29 C 0.030 3.970 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.243 0.757 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.226 0.774 43 H 0.074 0.926 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.894 -22.688 4.399 23.128 hybrid contribution -0.102 1.330 0.543 1.440 sum -0.996 -21.358 4.942 21.945 Atomic orbital electron populations 1.69910 1.04905 1.25074 1.57656 1.24777 0.95767 0.97659 1.02275 0.86072 0.78594 0.83244 0.77616 1.21541 1.21672 1.20665 1.19106 0.90580 0.82189 1.43279 0.90288 1.44282 1.01232 0.99880 1.87294 1.21829 0.94585 0.85716 0.97384 1.22362 0.95472 0.79540 0.99337 0.87884 1.45661 1.48878 1.11170 1.29294 1.19200 0.78664 0.85216 0.83345 1.90701 1.47780 1.77059 1.25954 1.20022 1.11233 0.91739 0.90014 1.18942 0.93369 1.03755 0.92855 1.20936 0.96954 0.97403 0.94554 1.21179 0.98564 1.01072 0.93843 1.21049 0.92034 0.97299 1.00260 1.21181 1.00600 1.03089 0.92426 1.17588 0.82761 0.99271 0.90643 1.91543 1.49447 1.87618 1.82296 1.23032 0.93041 0.99427 1.01322 1.23087 0.96917 0.97267 1.00552 1.23502 0.95500 0.96926 0.83233 0.92155 1.86265 1.49211 1.71360 1.30428 1.21846 0.85564 0.87667 1.01948 0.93760 0.95738 0.93764 0.75724 0.84815 0.85113 0.84971 0.84600 0.86839 0.88051 0.87700 0.87624 0.77370 0.92647 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 10.31 55.49 0.57 -26.52 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.88 3.40 -170.03 -0.58 -16.46 16 10 C 0.13 3.07 6.93 -2.50 -0.02 3.05 16 11 C 0.14 2.71 3.25 -65.79 -0.21 2.49 16 12 H 0.10 2.12 7.63 -51.93 -0.40 1.73 16 13 N -0.70 -11.69 5.08 -51.73 -0.26 -11.95 16 14 C 0.55 9.25 7.38 -10.98 -0.08 9.17 16 15 O -0.54 -10.92 15.95 5.56 0.09 -10.83 16 16 C -0.13 -1.61 1.78 -156.77 -0.28 -1.89 16 17 C -0.09 -1.03 4.23 -104.55 -0.44 -1.47 16 18 C -0.08 -0.74 9.14 -39.59 -0.36 -1.10 16 19 C -0.13 -1.03 10.04 -39.58 -0.40 -1.43 16 20 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 21 C -0.15 -1.59 10.03 -39.51 -0.40 -1.98 16 22 C 0.12 1.48 7.20 -39.42 -0.28 1.19 16 23 F -0.13 -1.95 16.62 2.25 0.04 -1.91 16 24 C -0.13 -1.48 9.50 -26.73 -0.25 -1.73 16 25 C -0.14 -1.35 9.59 -26.70 -0.26 -1.61 16 26 C 0.07 1.26 4.19 -24.90 -0.10 1.15 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.57 -9.24 12.14 -35.23 -0.43 -9.67 16 29 C 0.16 3.70 5.14 -3.06 -0.02 3.69 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.41 6.23 6.66 -40.82 -0.27 5.96 16 34 H 0.13 0.98 7.96 -52.49 -0.42 0.56 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.11 1.43 7.67 -51.93 -0.40 1.03 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.11 0.76 8.04 -51.93 -0.42 0.34 16 42 H 0.38 4.74 9.12 45.56 0.42 5.16 16 43 H 0.06 1.45 7.38 -51.93 -0.38 1.06 16 44 H 0.05 1.37 7.44 -51.93 -0.39 0.98 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -34.28 371.50 -8.93 -43.21 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.18 Total: 9.59 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.75 Total: 1.46 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.27 Total: -54.93 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.34 Total: -20.50 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.28 -8.93 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083909714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.079 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds