Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48498 * 109.47246 * 270.00338 * 3 2 1 5 5 H 1.48503 * 109.46872 * 30.00231 * 3 2 1 6 6 H 1.48498 * 109.47461 * 149.99830 * 3 2 1 7 7 C 1.38818 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 179.97438 * 7 2 1 9 9 N 1.36926 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.47474 * 125.63025 * 179.97438 * 9 7 2 11 11 C 1.54907 * 104.81131 * 204.06843 * 10 9 7 12 12 H 1.09004 * 111.00344 * 81.14059 * 11 10 9 13 13 N 1.46500 * 111.00267 * 204.94827 * 11 10 9 14 14 C 1.34782 * 119.99896 * 270.42048 * 13 11 10 15 15 O 1.21274 * 120.00157 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99716 * 180.02562 * 14 13 11 17 17 C 1.50701 * 115.55135 * 325.67122 * 16 14 13 18 18 C 1.38221 * 120.01668 * 98.57028 * 17 16 14 19 19 C 1.38222 * 120.02550 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.05504 * 359.97438 * 19 18 17 21 21 C 1.38185 * 120.02371 * 0.03883 * 20 19 18 22 22 C 1.38447 * 120.01140 * 278.29875 * 17 16 14 23 23 F 1.35102 * 120.02382 * 359.97438 * 22 17 16 24 24 C 1.53002 * 117.49878 * 180.02562 * 16 14 13 25 25 C 1.52994 * 60.03261 * 252.49616 * 24 16 14 26 26 C 1.55150 * 101.61992 * 323.04535 * 11 10 9 27 27 H 1.08996 * 110.72415 * 153.84888 * 26 11 10 28 28 O 1.42903 * 110.72031 * 276.94119 * 26 11 10 29 29 C 1.47024 * 125.65171 * 359.97330 * 9 7 2 30 30 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.34413 * 85.25267 * 10 9 7 32 32 H 1.08999 * 110.40023 * 322.91880 * 10 9 7 33 33 H 0.96993 * 119.99921 * 90.42484 * 13 11 10 34 34 H 1.08000 * 119.98332 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.96759 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99233 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.01111 * 179.97438 * 21 20 19 38 38 H 1.08998 * 117.49839 * 0.02562 * 24 16 14 39 39 H 1.08999 * 117.49828 * 144.99185 * 24 16 14 40 40 H 1.09005 * 117.50286 * 107.49895 * 25 24 16 41 41 H 1.09001 * 117.50134 * 252.52041 * 25 24 16 42 42 H 0.96699 * 114.00111 * 179.97438 * 28 26 11 43 43 H 1.09005 * 109.87861 * 59.56126 * 29 9 7 44 44 H 1.08999 * 110.01306 * 298.46686 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9342 -3.7313 -0.0016 11 6 0.8515 -4.6560 -0.6119 12 1 0.8554 -4.5967 -1.7004 13 7 1.0291 -6.0394 -0.1637 14 6 1.8111 -6.8810 -0.8685 15 8 2.3681 -6.4930 -1.8735 16 6 1.9932 -8.3042 -0.4077 17 6 2.0042 -8.5076 1.0855 18 6 0.8592 -8.9303 1.7341 19 6 0.8692 -9.1175 3.1036 20 6 2.0244 -8.8827 3.8261 21 6 3.1702 -8.4598 3.1799 22 6 3.1628 -8.2766 1.8073 23 9 4.2842 -7.8692 1.1735 24 6 2.8936 -9.2098 -1.2504 25 6 1.3770 -9.4104 -1.2678 26 6 -0.4484 -4.0441 -0.0263 27 1 -1.2989 -4.2514 -0.6757 28 8 -0.6898 -4.5377 1.2929 29 6 -0.1374 -2.5328 0.0006 30 1 -0.4850 0.8400 0.0004 31 1 2.1684 -4.0421 1.0166 32 1 2.8329 -3.7408 -0.6183 33 1 0.5838 -6.3496 0.6402 34 1 -0.0433 -9.1152 1.1706 35 1 -0.0261 -9.4474 3.6095 36 1 2.0312 -9.0296 4.8961 37 1 4.0723 -8.2760 3.7445 38 1 3.3545 -8.7761 -2.1378 39 1 3.4935 -9.9527 -0.7248 40 1 0.8396 -9.1087 -2.1669 41 1 0.9790 -10.2851 -0.7533 42 1 -1.4909 -4.1853 1.7041 43 1 -0.5581 -2.0521 -0.8827 44 1 -0.5560 -2.0841 0.9014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083909714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = -67.453937 kcal Electronic energy + Delta-G solvation = -29513.449860 eV Core-core repulsion = 25346.036710 eV Total energy + Delta-G solvation = -4167.413150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.89017 -41.58891 -40.13521 -39.38660 -37.31655 -36.49800 -35.50482 -33.63392 -31.80473 -31.28628 -30.36509 -28.96390 -26.76641 -25.43264 -24.13542 -23.41455 -22.89547 -22.32910 -21.69164 -20.77380 -19.31963 -18.83741 -18.34860 -18.08978 -17.19041 -17.05007 -16.83844 -16.55272 -16.51646 -15.96910 -15.77820 -15.74231 -15.21655 -14.98724 -14.82507 -14.59332 -14.40713 -14.15759 -14.00271 -13.83092 -13.28541 -13.23016 -12.88805 -12.80842 -12.78077 -12.48417 -12.34478 -12.24162 -12.15372 -11.99336 -11.90783 -11.62977 -11.36951 -11.10740 -10.89877 -10.79848 -10.15469 -9.89304 -9.59993 -8.99151 -7.91876 -5.28113 0.16022 0.27104 1.37967 1.43349 1.45272 1.53960 1.98951 2.45882 2.61172 2.72919 3.13513 3.26843 3.34937 3.37424 3.51967 3.70617 3.78816 3.79586 3.84501 3.90046 4.03913 4.18456 4.20065 4.41062 4.42782 4.47528 4.62114 4.62910 4.67065 4.74867 4.86443 4.97298 4.98580 5.13103 5.15337 5.23595 5.31308 5.39198 5.40975 5.45004 5.49840 5.61411 5.96447 6.10841 6.51371 6.85947 7.03619 7.17420 7.66297 8.30614 9.18000 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.003344 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.047746 B = 8370.898829 C = 8562.992198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.055 4.055 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.620 5.620 10 C 0.134 3.866 11 C 0.150 3.850 12 H 0.091 0.909 13 N -0.689 5.689 14 C 0.546 3.454 15 O -0.582 6.582 16 C -0.140 4.140 17 C -0.098 4.098 18 C -0.079 4.079 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.165 4.165 22 C 0.078 3.922 23 F -0.157 7.157 24 C -0.140 4.140 25 C -0.108 4.108 26 C 0.095 3.905 27 H 0.096 0.904 28 O -0.564 6.564 29 C 0.161 3.839 30 H 0.251 0.749 31 H 0.017 0.983 32 H 0.021 0.979 33 H 0.417 0.583 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.141 0.859 42 H 0.399 0.601 43 H 0.027 0.973 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -25.027 6.820 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.249 4.249 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.007 3.993 11 C 0.043 3.957 12 H 0.109 0.891 13 N -0.340 5.340 14 C 0.333 3.667 15 O -0.462 6.462 16 C -0.143 4.143 17 C -0.099 4.099 18 C -0.097 4.097 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.184 4.184 22 C 0.059 3.941 23 F -0.135 7.135 24 C -0.177 4.177 25 C -0.145 4.145 26 C 0.035 3.965 27 H 0.114 0.886 28 O -0.372 6.372 29 C 0.035 3.965 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.255 0.745 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.159 0.841 42 H 0.250 0.750 43 H 0.045 0.955 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.858 -24.827 5.990 25.699 hybrid contribution 0.514 1.964 0.133 2.034 sum -2.344 -22.863 6.124 23.785 Atomic orbital electron populations 1.70098 1.05975 1.25629 1.57687 1.25586 0.96775 1.00670 1.01867 0.85067 0.77595 0.78959 0.77607 1.21119 1.21200 1.19929 1.19393 0.90814 0.83751 1.44154 0.90957 1.44547 1.02602 1.00317 1.87198 1.21820 0.95115 0.85653 0.96674 1.21970 0.94613 0.80628 0.98483 0.89057 1.45506 1.49054 1.09773 1.29632 1.19978 0.77331 0.86862 0.82483 1.90677 1.49257 1.78303 1.27986 1.19895 1.13563 0.89440 0.91390 1.18951 0.93988 1.05042 0.91965 1.21255 0.96654 0.96412 0.95336 1.21622 0.99458 0.99223 0.93412 1.21458 0.91290 0.95790 1.01760 1.21415 1.01955 1.03326 0.91662 1.18069 0.82734 1.01498 0.91844 1.91471 1.50852 1.88308 1.82898 1.23053 0.94692 0.99472 1.00505 1.23261 0.95223 0.96431 0.99601 1.23114 0.95869 0.92578 0.84964 0.88633 1.86226 1.50815 1.70818 1.29390 1.21730 0.83883 0.91454 0.99410 0.93970 0.96544 0.96019 0.74538 0.82427 0.81744 0.82098 0.84068 0.88976 0.86678 0.87669 0.84106 0.74993 0.95471 0.95294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.22 10.31 21.65 0.22 -55.99 16 2 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.25 -15.02 10.28 84.04 0.86 -14.15 16 8 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -33.93 3.40 -691.87 -2.35 -36.28 16 10 C 0.13 6.49 6.93 86.85 0.60 7.09 16 11 C 0.15 5.89 3.25 46.38 0.15 6.04 16 12 H 0.09 3.85 7.63 -2.38 -0.02 3.83 16 13 N -0.69 -22.63 5.08 -435.98 -2.21 -24.85 16 14 C 0.55 18.47 7.38 87.66 0.65 19.12 16 15 O -0.58 -24.60 15.95 -3.01 -0.05 -24.65 16 16 C -0.14 -3.41 1.78 -53.65 -0.10 -3.51 16 17 C -0.10 -2.13 4.23 -19.82 -0.08 -2.21 16 18 C -0.08 -1.15 9.14 22.26 0.20 -0.95 16 19 C -0.12 -1.38 10.04 22.27 0.22 -1.16 16 20 C -0.09 -1.14 10.04 22.26 0.22 -0.92 16 21 C -0.16 -3.21 10.03 22.31 0.22 -2.98 16 22 C 0.08 1.95 7.20 22.38 0.16 2.11 16 23 F -0.16 -4.92 16.62 44.97 0.75 -4.17 16 24 C -0.14 -3.11 9.50 30.59 0.29 -2.82 16 25 C -0.11 -1.81 9.59 30.62 0.29 -1.51 16 26 C 0.10 3.39 4.19 31.78 0.13 3.52 16 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 28 O -0.56 -17.03 12.14 -148.98 -1.81 -18.83 16 29 C 0.16 7.80 5.14 86.73 0.45 8.24 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.42 12.00 6.66 -92.71 -0.62 11.38 16 34 H 0.16 1.51 7.96 -2.91 -0.02 1.48 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 37 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.09 2.43 7.67 -2.39 -0.02 2.41 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.14 1.39 8.04 -2.39 -0.02 1.37 16 42 H 0.40 8.79 9.12 -74.06 -0.68 8.11 16 43 H 0.03 1.46 7.38 -2.38 -0.02 1.44 16 44 H 0.03 1.53 7.44 -2.39 -0.02 1.51 16 Total: -1.00 -78.75 371.50 1.08 -77.68 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.25 Total: 25.06 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 4.75 Total: 13.17 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -4.34 Total: -117.12 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.86 Total: -43.49 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.75 Total: -4.17 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.75 1.08 -77.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083909714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.222 kcal (2) G-P(sol) polarization free energy of solvation -78.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds