Wall clock time and date at job start Tue Mar 31 2020 17:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34770 * 120.00351 * 2 1 4 4 O 1.21508 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.48229 * 120.00143 * 180.02562 * 3 2 1 6 6 C 1.39623 * 119.65262 * 180.02562 * 5 3 2 7 7 C 1.38548 * 119.24431 * 180.02562 * 6 5 3 8 8 C 1.38584 * 118.55267 * 359.97438 * 7 6 5 9 9 C 1.39587 * 119.24835 * 0.02562 * 8 7 6 10 10 C 1.48225 * 119.65143 * 180.02562 * 9 8 7 11 11 O 1.21506 * 119.99987 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99426 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99428 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.78403 * 36.78395 * 13 12 10 15 15 C 1.54325 * 110.72047 * 273.54319 * 13 12 10 16 16 N 1.47025 * 107.27124 * 263.83426 * 15 13 12 17 17 C 1.36938 * 125.64661 * 181.02202 * 16 15 13 18 18 H 1.07999 * 120.00291 * 10.38698 * 17 16 15 19 19 C 1.38815 * 119.99697 * 190.10830 * 17 16 15 20 20 N 1.31617 * 120.00027 * 9.60119 * 19 17 16 21 21 Si 1.86797 * 119.99629 * 189.60109 * 19 17 16 22 22 H 1.48503 * 109.47317 * 94.11739 * 21 19 17 23 23 H 1.48504 * 109.47004 * 214.11628 * 21 19 17 24 24 H 1.48504 * 109.47440 * 334.11773 * 21 19 17 25 25 C 1.47422 * 108.70473 * 1.28243 * 16 15 13 26 26 C 1.55135 * 104.72243 * 335.55732 * 25 16 15 27 27 H 1.08995 * 111.22254 * 279.17679 * 26 25 16 28 28 O 1.42900 * 110.90633 * 155.27027 * 26 25 16 29 29 N 1.32344 * 119.65116 * 0.27302 * 5 3 2 30 30 H 1.09003 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46735 * 299.99579 * 1 2 3 32 32 H 1.09002 * 109.47359 * 59.99478 * 1 2 3 33 33 H 0.97004 * 119.99442 * 180.02562 * 2 1 3 34 34 H 1.07999 * 120.37989 * 0.02562 * 6 5 3 35 35 H 1.08003 * 120.72606 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.37296 * 179.97438 * 8 7 6 37 37 H 0.96994 * 120.00713 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.88429 * 144.41752 * 15 13 12 39 39 H 1.09003 * 110.01101 * 23.31817 * 15 13 12 40 40 H 0.97001 * 119.99777 * 180.02562 * 20 19 17 41 41 H 1.09005 * 110.36292 * 94.48209 * 25 16 15 42 42 H 1.08994 * 110.37217 * 216.80981 * 25 16 15 43 43 H 0.96703 * 113.99575 * 67.97852 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6212 1.1670 -0.0006 6 6 4.3120 2.3804 0.0000 7 6 5.6974 2.3705 -0.0011 8 6 6.3511 1.1485 -0.0022 9 6 5.5988 -0.0274 -0.0026 10 6 6.2887 -1.3393 -0.0032 11 8 7.5028 -1.3872 -0.0037 12 7 5.5692 -2.4789 -0.0031 13 6 6.2511 -3.7756 -0.0043 14 1 7.1540 -3.7383 0.6053 15 6 6.5831 -4.2167 -1.4454 16 7 5.5066 -5.1162 -1.8854 17 6 5.4363 -5.7414 -3.1017 18 1 6.2880 -5.7283 -3.7657 19 6 4.2723 -6.3970 -3.4788 20 7 3.1782 -6.2613 -2.7600 21 14 4.2589 -7.4718 -5.0066 22 1 4.5292 -8.8808 -4.6230 23 1 2.9293 -7.3836 -5.6621 24 1 5.3074 -7.0056 -5.9492 25 6 4.5123 -5.2287 -0.8028 26 6 5.2998 -4.8965 0.4918 27 1 5.8638 -5.7604 0.8432 28 8 4.4238 -4.4109 1.5111 29 7 4.2758 0.0169 -0.0066 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9499 -0.8401 -0.0004 34 1 3.7725 3.3160 0.0012 35 1 6.2559 3.2949 -0.0003 36 1 7.4303 1.1064 -0.0034 37 1 4.6000 -2.4407 -0.0024 38 1 7.5368 -4.7443 -1.4612 39 1 6.6300 -3.3466 -2.1003 40 1 2.3649 -6.7197 -3.0233 41 1 3.7051 -4.5117 -0.9532 42 1 4.1160 -6.2430 -0.7555 43 1 3.8105 -5.0762 1.8522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084009732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:52 Heat of formation + Delta-G solvation = -45.657142 kcal Electronic energy + Delta-G solvation = -28966.253711 eV Core-core repulsion = 24819.705703 eV Total energy + Delta-G solvation = -4146.548009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.01501 -39.72062 -38.84578 -37.67709 -35.14621 -34.84037 -33.94880 -32.88179 -32.03141 -31.42923 -28.51869 -27.37479 -27.23438 -25.06774 -24.39218 -24.01690 -21.42152 -20.65057 -20.51854 -19.79070 -18.68367 -17.85936 -17.04435 -16.79769 -16.31222 -16.13461 -15.79336 -15.65033 -15.34491 -14.97305 -14.75914 -14.56050 -14.05724 -13.98097 -13.68513 -13.52767 -13.06786 -12.87517 -12.82214 -12.42523 -12.37449 -12.36756 -12.30581 -11.39526 -11.25551 -10.94433 -10.92272 -10.86337 -10.29722 -10.28921 -10.17329 -10.05311 -9.91458 -9.67246 -9.52369 -9.31721 -9.22964 -8.74271 -8.64582 -6.93017 -5.85252 -3.18456 0.28401 0.68455 2.34076 2.93695 3.00806 3.19823 3.34321 3.40586 3.41994 3.77595 3.78511 4.33432 4.49316 4.50561 4.63976 4.69757 4.73150 5.11230 5.18379 5.22715 5.26575 5.32576 5.37422 5.47307 5.62185 5.63620 5.67020 5.75851 5.78211 6.05707 6.13547 6.17763 6.21947 6.40781 6.60115 6.88689 7.12743 7.20692 7.38212 7.41609 7.65190 7.82603 7.97525 7.97891 8.13208 8.37939 9.07904 9.69204 10.34309 11.27680 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.003629 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.787665 B = 7714.603449 C = 8856.685412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.711 5.711 3 C 0.574 3.426 4 O -0.537 6.537 5 C 0.076 3.924 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.091 4.091 9 C 0.090 3.910 10 C 0.568 3.432 11 O -0.540 6.540 12 N -0.673 5.673 13 C 0.143 3.857 14 H 0.094 0.906 15 C 0.125 3.875 16 N -0.598 5.598 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.149 3.851 26 C 0.062 3.938 27 H 0.073 0.927 28 O -0.564 6.564 29 N -0.430 5.430 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.417 0.583 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.415 0.585 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 12.745 9.497 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C 0.358 3.642 4 O -0.413 6.413 5 C -0.065 4.065 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.052 4.052 10 C 0.352 3.648 11 O -0.417 6.417 12 N -0.323 5.323 13 C 0.037 3.963 14 H 0.112 0.888 15 C -0.001 4.001 16 N -0.326 5.326 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.023 3.977 26 C 0.002 3.998 27 H 0.091 0.909 28 O -0.368 6.368 29 N -0.144 5.144 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.252 0.748 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.171 13.051 9.256 16.001 hybrid contribution -0.195 -0.746 -0.844 1.143 sum -0.366 12.306 8.412 14.911 Atomic orbital electron populations 1.21633 0.78880 1.02982 1.02297 1.45655 1.08028 1.09174 1.73367 1.17829 0.85551 0.84171 0.76608 1.90776 1.68770 1.31304 1.50497 1.21086 0.94244 0.89389 1.01744 1.22297 0.94761 0.99394 0.95100 1.21661 0.93936 0.98653 0.97025 1.22371 1.02761 0.91604 0.94429 1.21246 0.88932 0.94776 1.00199 1.17746 0.86525 0.83115 0.77396 1.90770 1.12785 1.86905 1.51288 1.45526 1.11396 1.04310 1.71043 1.22079 0.95315 0.81318 0.97549 0.88820 1.21765 0.92985 0.93850 0.91523 1.44318 1.22128 1.52314 1.13865 1.19059 0.97857 1.26220 0.92637 0.90370 1.24810 0.95091 1.01349 0.98925 1.69925 1.00295 1.46002 1.40388 0.86099 0.76958 0.80491 0.82203 1.21534 1.21723 1.20533 1.22075 0.90700 1.01686 0.83197 1.23727 0.91862 0.94608 0.89624 0.90946 1.86364 1.52534 1.41755 1.56155 1.67401 1.09479 1.29200 1.08342 0.89954 0.92021 0.91954 0.74720 0.82964 0.83181 0.82704 0.74801 0.94398 0.94895 0.93660 0.94576 0.90834 0.77448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.70 59.84 0.64 1.45 16 2 N -0.71 -8.32 5.70 -67.92 -0.39 -8.70 16 3 C 0.57 7.68 7.81 -12.16 -0.09 7.59 16 4 O -0.54 -8.22 16.32 5.36 0.09 -8.13 16 5 C 0.08 0.97 6.75 -83.02 -0.56 0.41 16 6 C -0.09 -0.98 9.63 -38.95 -0.38 -1.36 16 7 C -0.09 -0.77 10.16 -39.34 -0.40 -1.17 16 8 C -0.09 -1.02 9.63 -38.95 -0.38 -1.40 16 9 C 0.09 1.26 6.75 -83.03 -0.56 0.70 16 10 C 0.57 9.47 7.81 -12.16 -0.09 9.37 16 11 O -0.54 -9.99 16.05 5.36 0.09 -9.91 16 12 N -0.67 -11.44 4.77 -52.85 -0.25 -11.69 16 13 C 0.14 2.55 3.13 -66.09 -0.21 2.34 16 14 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 15 C 0.13 2.62 6.98 -3.06 -0.02 2.60 16 16 N -0.60 -14.56 3.39 -169.93 -0.58 -15.14 16 17 C -0.23 -6.19 10.24 -15.06 -0.15 -6.35 16 18 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 19 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 20 N -0.92 -25.53 10.68 55.49 0.59 -24.94 16 21 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 3.27 5.14 -2.41 -0.01 3.26 16 26 C 0.06 1.07 4.23 -24.46 -0.10 0.97 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 O -0.56 -8.38 12.63 -35.23 -0.44 -8.82 16 29 N -0.43 -5.90 8.71 -6.38 -0.06 -5.95 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.42 4.76 8.16 -40.82 -0.33 4.42 16 34 H 0.15 1.37 7.64 -52.49 -0.40 0.97 16 35 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.16 1.58 7.64 -52.48 -0.40 1.17 16 37 H 0.42 6.99 7.52 -40.82 -0.31 6.68 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 43 H 0.38 4.18 9.12 45.56 0.42 4.59 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -33.10 369.26 -7.53 -40.63 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.71 Total: 12.48 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: -2.41 Total: 18.20 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.68 Total: -66.42 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.27 Total: -26.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.10 -7.53 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084009732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.029 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds