Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34770 * 120.00351 * 2 1 4 4 O 1.21508 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.48229 * 120.00143 * 180.02562 * 3 2 1 6 6 C 1.39623 * 119.65262 * 180.02562 * 5 3 2 7 7 C 1.38548 * 119.24431 * 180.02562 * 6 5 3 8 8 C 1.38584 * 118.55267 * 359.97438 * 7 6 5 9 9 C 1.39587 * 119.24835 * 0.02562 * 8 7 6 10 10 C 1.48225 * 119.65143 * 180.02562 * 9 8 7 11 11 O 1.21506 * 119.99987 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99426 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99428 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.78403 * 36.78395 * 13 12 10 15 15 C 1.54325 * 110.72047 * 273.54319 * 13 12 10 16 16 N 1.47025 * 107.27124 * 263.83426 * 15 13 12 17 17 C 1.36938 * 125.64661 * 181.02202 * 16 15 13 18 18 H 1.07999 * 120.00291 * 10.38698 * 17 16 15 19 19 C 1.38815 * 119.99697 * 190.10830 * 17 16 15 20 20 N 1.31617 * 120.00027 * 9.60119 * 19 17 16 21 21 Si 1.86797 * 119.99629 * 189.60109 * 19 17 16 22 22 H 1.48503 * 109.47317 * 94.11739 * 21 19 17 23 23 H 1.48504 * 109.47004 * 214.11628 * 21 19 17 24 24 H 1.48504 * 109.47440 * 334.11773 * 21 19 17 25 25 C 1.47422 * 108.70473 * 1.28243 * 16 15 13 26 26 C 1.55135 * 104.72243 * 335.55732 * 25 16 15 27 27 H 1.08995 * 111.22254 * 279.17679 * 26 25 16 28 28 O 1.42900 * 110.90633 * 155.27027 * 26 25 16 29 29 N 1.32344 * 119.65116 * 0.27302 * 5 3 2 30 30 H 1.09003 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46735 * 299.99579 * 1 2 3 32 32 H 1.09002 * 109.47359 * 59.99478 * 1 2 3 33 33 H 0.97004 * 119.99442 * 180.02562 * 2 1 3 34 34 H 1.07999 * 120.37989 * 0.02562 * 6 5 3 35 35 H 1.08003 * 120.72606 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.37296 * 179.97438 * 8 7 6 37 37 H 0.96994 * 120.00713 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.88429 * 144.41752 * 15 13 12 39 39 H 1.09003 * 110.01101 * 23.31817 * 15 13 12 40 40 H 0.97001 * 119.99777 * 180.02562 * 20 19 17 41 41 H 1.09005 * 110.36292 * 94.48209 * 25 16 15 42 42 H 1.08994 * 110.37217 * 216.80981 * 25 16 15 43 43 H 0.96703 * 113.99575 * 67.97852 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6212 1.1670 -0.0006 6 6 4.3120 2.3804 0.0000 7 6 5.6974 2.3705 -0.0011 8 6 6.3511 1.1485 -0.0022 9 6 5.5988 -0.0274 -0.0026 10 6 6.2887 -1.3393 -0.0032 11 8 7.5028 -1.3872 -0.0037 12 7 5.5692 -2.4789 -0.0031 13 6 6.2511 -3.7756 -0.0043 14 1 7.1540 -3.7383 0.6053 15 6 6.5831 -4.2167 -1.4454 16 7 5.5066 -5.1162 -1.8854 17 6 5.4363 -5.7414 -3.1017 18 1 6.2880 -5.7283 -3.7657 19 6 4.2723 -6.3970 -3.4788 20 7 3.1782 -6.2613 -2.7600 21 14 4.2589 -7.4718 -5.0066 22 1 4.5292 -8.8808 -4.6230 23 1 2.9293 -7.3836 -5.6621 24 1 5.3074 -7.0056 -5.9492 25 6 4.5123 -5.2287 -0.8028 26 6 5.2998 -4.8965 0.4918 27 1 5.8638 -5.7604 0.8432 28 8 4.4238 -4.4109 1.5111 29 7 4.2758 0.0169 -0.0066 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9499 -0.8401 -0.0004 34 1 3.7725 3.3160 0.0012 35 1 6.2559 3.2949 -0.0003 36 1 7.4303 1.1064 -0.0034 37 1 4.6000 -2.4407 -0.0024 38 1 7.5368 -4.7443 -1.4612 39 1 6.6300 -3.3466 -2.1003 40 1 2.3649 -6.7197 -3.0233 41 1 3.7051 -4.5117 -0.9532 42 1 4.1160 -6.2430 -0.7555 43 1 3.8105 -5.0762 1.8522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084009732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -73.402676 kcal Electronic energy + Delta-G solvation = -28967.456848 eV Core-core repulsion = 24819.705703 eV Total energy + Delta-G solvation = -4147.751145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.02252 -40.96280 -40.00066 -39.06660 -36.63281 -35.80904 -35.42227 -33.97928 -33.40184 -32.72379 -30.20896 -28.88429 -28.23090 -26.59772 -25.66468 -25.04793 -22.58124 -22.27349 -21.67188 -21.25088 -19.74256 -19.04446 -18.80046 -18.18032 -17.23332 -17.17556 -17.10015 -16.75262 -16.65855 -16.32773 -16.07130 -15.83268 -15.59232 -15.11333 -14.88115 -14.65690 -14.55351 -14.25716 -14.05438 -13.87624 -13.74504 -13.19192 -13.17550 -13.11523 -12.93486 -12.79180 -12.65374 -12.05186 -12.00291 -11.91382 -11.73902 -11.22619 -11.13015 -10.83073 -10.73881 -10.70101 -10.51588 -10.18885 -10.05733 -8.90374 -7.90602 -5.25699 -0.64539 -0.21572 1.34478 1.47234 1.47675 1.56608 1.85808 1.95153 2.06716 2.46894 2.75236 2.77557 3.09657 3.29367 3.53576 3.65781 3.77674 3.78907 3.82421 3.90583 3.99817 4.28401 4.31324 4.38045 4.45480 4.52762 4.60110 4.62335 4.85648 4.87926 4.89708 4.92930 4.96890 5.28776 5.35191 5.36913 5.45923 5.48556 5.66392 6.13281 6.15560 6.38255 6.59838 6.87217 6.99305 7.04646 7.09305 7.70470 8.35440 9.20297 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.003629 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.787665 B = 7714.603449 C = 8856.685412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.710 5.710 3 C 0.569 3.431 4 O -0.562 6.562 5 C 0.057 3.943 6 C -0.087 4.087 7 C -0.066 4.066 8 C -0.087 4.087 9 C 0.063 3.937 10 C 0.567 3.433 11 O -0.563 6.563 12 N -0.676 5.676 13 C 0.149 3.851 14 H 0.107 0.893 15 C 0.126 3.874 16 N -0.616 5.616 17 C -0.248 4.248 18 H 0.076 0.924 19 C -0.053 4.053 20 N -0.941 5.941 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.159 3.841 26 C 0.087 3.913 27 H 0.091 0.909 28 O -0.560 6.560 29 N -0.442 5.442 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.417 0.583 34 H 0.170 0.830 35 H 0.197 0.803 36 H 0.166 0.834 37 H 0.415 0.585 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.250 0.750 41 H 0.010 0.990 42 H 0.046 0.954 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 13.873 10.162 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.360 5.360 3 C 0.355 3.645 4 O -0.441 6.441 5 C -0.084 4.084 6 C -0.108 4.108 7 C -0.091 4.091 8 C -0.107 4.107 9 C -0.077 4.077 10 C 0.353 3.647 11 O -0.442 6.442 12 N -0.325 5.325 13 C 0.044 3.956 14 H 0.125 0.875 15 C 0.000 4.000 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.094 0.906 19 C -0.247 4.247 20 N -0.589 5.589 21 Si 0.802 3.198 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.033 3.967 26 C 0.027 3.973 27 H 0.109 0.891 28 O -0.367 6.367 29 N -0.157 5.157 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.187 0.813 35 H 0.214 0.786 36 H 0.184 0.816 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.505 14.165 9.945 17.315 hybrid contribution -0.431 -1.031 -1.046 1.531 sum 0.073 13.134 8.899 15.865 Atomic orbital electron populations 1.21796 0.77692 1.04396 1.02286 1.45772 1.08962 1.08827 1.72397 1.18021 0.86006 0.84184 0.76331 1.90752 1.69294 1.31989 1.52047 1.21177 0.94002 0.90113 1.03077 1.22602 0.95601 0.99090 0.93475 1.22112 0.93264 0.99368 0.94347 1.22594 1.03284 0.91460 0.93408 1.21020 0.89342 0.94344 1.03025 1.18146 0.86384 0.83857 0.76338 1.90741 1.13685 1.87421 1.52340 1.45526 1.11346 1.04287 1.71335 1.21947 0.96113 0.81997 0.95590 0.87503 1.21833 0.92434 0.92623 0.93138 1.44551 1.23263 1.52778 1.13816 1.19356 0.97944 1.26570 0.93826 0.90642 1.25542 0.94845 1.02589 1.01740 1.70094 1.00505 1.46618 1.41647 0.85138 0.76659 0.78835 0.79120 1.21067 1.22070 1.19817 1.21883 0.90337 0.99293 0.85162 1.23342 0.91217 0.94832 0.87957 0.89116 1.86344 1.52757 1.42654 1.54936 1.67240 1.09534 1.30067 1.08825 0.87888 0.91610 0.92332 0.74701 0.81297 0.78620 0.81608 0.74855 0.93672 0.96814 0.94083 0.97195 0.93546 0.75211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 10.70 127.77 1.37 2.87 16 2 N -0.71 -16.54 5.70 -487.10 -2.78 -19.32 16 3 C 0.57 15.07 7.81 86.90 0.68 15.75 16 4 O -0.56 -16.96 16.32 -3.74 -0.06 -17.02 16 5 C 0.06 1.41 6.75 42.06 0.28 1.70 16 6 C -0.09 -1.60 9.63 22.68 0.22 -1.38 16 7 C -0.07 -0.93 10.16 22.43 0.23 -0.71 16 8 C -0.09 -1.76 9.63 22.68 0.22 -1.54 16 9 C 0.06 1.74 6.75 42.04 0.28 2.02 16 10 C 0.57 18.75 7.81 86.90 0.68 19.43 16 11 O -0.56 -20.57 16.05 -3.73 -0.06 -20.63 16 12 N -0.68 -22.93 4.77 -439.41 -2.10 -25.03 16 13 C 0.15 5.25 3.13 46.18 0.14 5.40 16 14 H 0.11 3.54 7.70 -2.39 -0.02 3.52 16 15 C 0.13 5.32 6.98 86.73 0.61 5.92 16 16 N -0.62 -30.53 3.39 -691.52 -2.35 -32.88 16 17 C -0.25 -13.61 10.24 84.03 0.86 -12.74 16 18 H 0.08 4.06 7.85 -2.91 -0.02 4.03 16 19 C -0.05 -2.90 5.40 84.86 0.46 -2.44 16 20 N -0.94 -53.31 10.68 21.65 0.23 -53.08 16 21 Si 0.97 44.40 29.56 68.60 2.03 46.42 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.16 7.09 5.14 86.93 0.45 7.54 16 26 C 0.09 2.93 4.23 32.07 0.14 3.07 16 27 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 28 O -0.56 -15.81 12.63 -148.98 -1.88 -17.69 16 29 N -0.44 -11.97 8.71 -174.09 -1.52 -13.49 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 9.62 8.16 -92.71 -0.76 8.87 16 34 H 0.17 2.56 7.64 -2.91 -0.02 2.53 16 35 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.17 2.98 7.64 -2.91 -0.02 2.96 16 37 H 0.41 14.11 7.52 -92.71 -0.70 13.41 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.01 0.63 8.05 -2.39 -0.02 0.61 16 40 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 41 H 0.01 0.50 8.08 -2.38 -0.02 0.48 16 42 H 0.05 2.31 6.92 -2.39 -0.02 2.29 16 43 H 0.40 8.05 9.12 -74.06 -0.68 7.38 16 Total: -1.00 -72.65 369.26 -2.91 -75.56 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -1.04 Total: 32.26 kcal Atomic # 6 Polarization: 38.27 SS G_CDS: 6.61 Total: 44.88 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -8.51 Total: -143.79 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -2.00 Total: -55.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.65 -2.91 -75.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084009732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.157 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds