Wall clock time and date at job start Tue Mar 31 2020 18:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99783 * 3 2 1 5 5 H 1.48502 * 109.46890 * 29.99547 * 3 2 1 6 6 H 1.48501 * 109.46975 * 149.99644 * 3 2 1 7 7 C 1.38808 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00281 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00475 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84526 * 23.80677 * 10 9 7 12 12 C 1.53778 * 113.61553 * 154.99709 * 10 9 7 13 13 C 1.53781 * 87.07733 * 139.98478 * 12 10 9 14 14 H 1.08999 * 113.61748 * 89.20608 * 13 12 10 15 15 C 1.53005 * 113.61219 * 220.02156 * 13 12 10 16 16 N 1.46503 * 109.46965 * 183.47308 * 15 13 12 17 17 C 1.34773 * 119.99978 * 179.97438 * 16 15 13 18 18 O 1.21285 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00263 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.81265 * 53.12696 * 19 17 16 21 21 C 1.54706 * 110.75189 * 289.80985 * 19 17 16 22 22 C 1.51649 * 101.94914 * 266.91555 * 21 19 17 23 23 C 1.37750 * 132.14344 * 164.38274 * 22 21 19 24 24 C 1.38535 * 119.96053 * 180.90357 * 23 22 21 25 25 F 1.35102 * 120.14438 * 179.72488 * 24 23 22 26 26 C 1.38476 * 119.71416 * 359.97438 * 24 23 22 27 27 C 1.37930 * 120.32494 * 359.81367 * 26 24 23 28 28 C 1.38861 * 107.05261 * 344.85448 * 22 21 19 29 29 O 1.36195 * 111.21221 * 358.56285 * 28 22 21 30 30 C 1.53773 * 87.17648 * 334.61202 * 13 12 10 31 31 H 0.96997 * 120.00528 * 0.02562 * 1 2 3 32 32 H 0.97006 * 119.99574 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.61293 * 25.44182 * 12 10 9 34 34 H 1.08996 * 113.61975 * 254.53543 * 12 10 9 35 35 H 1.08997 * 109.47622 * 63.47226 * 15 13 12 36 36 H 1.08997 * 109.46924 * 303.46729 * 15 13 12 37 37 H 0.97001 * 119.99928 * 359.97438 * 16 15 13 38 38 H 1.08990 * 110.93863 * 148.75255 * 21 19 17 39 39 H 1.09001 * 110.93276 * 25.07576 * 21 19 17 40 40 H 1.08003 * 120.02078 * 0.88453 * 23 22 21 41 41 H 1.08007 * 119.83531 * 179.81631 * 26 24 23 42 42 H 1.07994 * 119.86327 * 179.97438 * 27 26 24 43 43 H 1.08996 * 113.61792 * 139.93919 * 30 13 12 44 44 H 1.09009 * 113.61337 * 270.84526 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 0.4060 12 6 1.2603 -4.8288 0.5961 13 6 1.8482 -5.6975 -0.5284 14 1 2.7980 -6.1646 -0.2682 15 6 0.8451 -6.6852 -1.1279 16 7 1.5182 -7.5188 -2.1270 17 6 0.8267 -8.4669 -2.7899 18 8 -0.3527 -8.6303 -2.5590 19 6 1.5192 -9.3249 -3.8172 20 1 2.4094 -9.7916 -3.3955 21 6 1.8780 -8.4950 -5.0726 22 6 0.6718 -8.7316 -5.9607 23 6 0.2115 -8.0844 -7.0862 24 6 -0.9544 -8.5106 -7.7012 25 9 -1.4122 -7.8751 -8.8020 26 6 -1.6514 -9.5875 -7.1797 27 6 -1.1882 -10.2383 -6.0552 28 6 -0.0153 -9.8171 -5.4336 29 8 0.6214 -10.3192 -4.3393 30 6 2.0013 -4.4033 -1.3447 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 0.1800 -4.7002 0.5290 34 1 1.5917 -5.1211 1.5924 35 1 0.0323 -6.1349 -1.6019 36 1 0.4425 -7.3188 -0.3377 37 1 2.4615 -7.3884 -2.3115 38 1 2.7869 -8.8715 -5.5417 39 1 1.9781 -7.4382 -4.8252 40 1 0.7591 -7.2451 -7.4888 41 1 -2.5623 -9.9195 -7.6558 42 1 -1.7379 -11.0771 -5.6546 43 1 2.9301 -4.3527 -1.9128 44 1 1.1238 -4.1582 -1.9432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086214244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:50 Heat of formation + Delta-G solvation = -52.577232 kcal Electronic energy + Delta-G solvation = -27552.865023 eV Core-core repulsion = 23386.096975 eV Total energy + Delta-G solvation = -4166.768048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.11357 -41.89140 -39.59061 -38.47375 -37.39059 -34.85967 -33.52916 -33.08997 -30.64336 -30.09306 -29.87575 -27.42803 -25.16694 -24.87295 -23.77812 -22.89043 -22.26962 -21.15394 -20.90114 -19.19794 -18.25302 -17.82213 -17.61303 -17.12194 -17.06440 -16.10223 -15.93904 -15.65816 -15.29320 -14.91649 -14.75296 -14.61214 -14.41593 -13.80605 -13.72238 -13.60471 -13.39046 -13.31289 -13.11305 -12.98277 -12.75610 -12.22786 -11.95142 -11.87469 -11.72930 -11.46304 -11.27659 -11.21725 -10.86941 -10.57568 -10.32546 -10.17772 -9.94462 -9.88583 -9.54557 -9.43948 -9.18139 -8.90634 -8.40282 -7.00284 -5.81561 -3.10815 0.71730 0.81203 2.23456 2.55021 3.02113 3.18783 3.40164 3.45221 3.47240 3.68139 3.91765 4.14455 4.30740 4.38345 4.54993 4.62980 4.69128 4.78570 4.89631 4.91381 5.05624 5.11581 5.15423 5.22391 5.42091 5.43254 5.43907 5.68729 5.74312 5.76590 5.77002 5.86607 5.88029 6.04366 6.12631 6.15728 6.24469 6.29137 6.35429 6.52547 6.67587 6.76186 7.05537 7.24496 7.65500 7.94726 8.36868 9.47909 10.05898 10.39818 11.40758 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.002229 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.157409 B =12556.458156 C =13878.757392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.132 3.868 16 N -0.718 5.718 17 C 0.493 3.507 18 O -0.520 6.520 19 C 0.064 3.936 20 H 0.145 0.855 21 C -0.099 4.099 22 C -0.148 4.148 23 C -0.100 4.100 24 C 0.070 3.930 25 F -0.137 7.137 26 C -0.116 4.116 27 C -0.103 4.103 28 C 0.105 3.895 29 O -0.271 6.271 30 C -0.162 4.162 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.401 0.599 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -23.519 -12.278 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.107 0.893 15 C 0.009 3.991 16 N -0.371 5.371 17 C 0.276 3.724 18 O -0.395 6.395 19 C 0.003 3.997 20 H 0.162 0.838 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.119 4.119 24 C 0.051 3.949 25 F -0.116 7.116 26 C -0.135 4.135 27 C -0.122 4.122 28 C 0.059 3.941 29 O -0.183 6.183 30 C -0.203 4.203 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.073 0.927 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.707 -23.636 -11.998 26.765 hybrid contribution 0.559 1.251 -0.305 1.404 sum 4.265 -22.385 -12.303 25.897 Atomic orbital electron populations 1.69657 1.05154 1.25814 1.57327 1.24777 0.95521 0.97822 1.02764 0.86193 0.78660 0.83803 0.77534 1.21684 1.21730 1.20722 1.19292 0.91049 0.84229 1.43087 0.91098 1.42418 1.05779 0.99889 1.86957 1.21540 0.95321 0.85055 0.92681 0.90650 1.23449 1.01085 0.96984 0.96699 1.22646 0.98345 0.94349 0.99295 0.89284 1.21492 0.95515 0.91966 0.90113 1.45977 1.13859 1.35991 1.41298 1.20786 0.87867 0.81228 0.82487 1.90766 1.15327 1.68371 1.65014 1.23374 0.92616 0.89395 0.94267 0.83787 1.21805 0.97121 1.02497 0.92194 1.20460 0.97672 0.98880 0.97845 1.20197 0.95695 1.00795 0.95237 1.17371 0.95623 0.95024 0.86922 1.91511 1.88518 1.81019 1.50536 1.20870 1.00808 0.95281 0.96546 1.20080 0.93346 1.02527 0.96243 1.19534 0.92898 0.93599 0.88026 1.86962 1.54624 1.35477 1.41222 1.23986 1.01319 0.94959 1.00030 0.93399 0.78058 0.90097 0.91923 0.91089 0.91555 0.76454 0.87276 0.87844 0.84208 0.83717 0.84168 0.92735 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.43 5.40 -52.55 -0.28 -17.71 16 10 C 0.17 3.08 4.48 -67.03 -0.30 2.78 16 11 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.14 -2.16 7.40 -25.92 -0.19 -2.35 16 13 C -0.13 -1.55 3.75 -89.81 -0.34 -1.89 16 14 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.13 1.60 5.50 -4.04 -0.02 1.58 16 16 N -0.72 -6.98 5.55 -60.29 -0.33 -7.31 16 17 C 0.49 5.73 7.03 -10.99 -0.08 5.65 16 18 O -0.52 -8.61 16.45 -13.48 -0.22 -8.83 16 19 C 0.06 0.53 4.11 -26.99 -0.11 0.42 16 20 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 21 C -0.10 -0.68 6.64 -26.52 -0.18 -0.86 16 22 C -0.15 -1.44 6.26 -104.10 -0.65 -2.09 16 23 C -0.10 -0.97 10.02 -39.65 -0.40 -1.36 16 24 C 0.07 0.71 7.31 -39.38 -0.29 0.42 16 25 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 26 C -0.12 -1.05 10.00 -39.61 -0.40 -1.45 16 27 C -0.10 -1.01 10.06 -39.31 -0.40 -1.40 16 28 C 0.10 1.15 6.82 -38.97 -0.27 0.89 16 29 O -0.27 -3.03 10.44 -39.40 -0.41 -3.44 16 30 C -0.16 -2.50 7.45 -25.83 -0.19 -2.69 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 10.10 7.92 -40.82 -0.32 9.77 16 33 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 2.61 8.47 -40.82 -0.35 2.27 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.66 7.91 -51.93 -0.41 0.25 16 40 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 41 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.36 7.92 -51.92 -0.41 0.95 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -34.39 376.78 -9.97 -44.37 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.09 Total: 8.50 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -4.05 Total: -9.63 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.11 Total: -52.25 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.63 Total: -12.27 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.39 -9.97 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086214244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.212 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds