Wall clock time and date at job start Tue Mar 31 2020 18:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99783 * 3 2 1 5 5 H 1.48502 * 109.46890 * 29.99547 * 3 2 1 6 6 H 1.48501 * 109.46975 * 149.99644 * 3 2 1 7 7 C 1.38808 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00281 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00475 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84526 * 23.80677 * 10 9 7 12 12 C 1.53778 * 113.61553 * 154.99709 * 10 9 7 13 13 C 1.53781 * 87.07733 * 139.98478 * 12 10 9 14 14 H 1.08999 * 113.61748 * 89.20608 * 13 12 10 15 15 C 1.53005 * 113.61219 * 220.02156 * 13 12 10 16 16 N 1.46503 * 109.46965 * 183.47308 * 15 13 12 17 17 C 1.34773 * 119.99978 * 179.97438 * 16 15 13 18 18 O 1.21285 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00263 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.81265 * 53.12696 * 19 17 16 21 21 C 1.54706 * 110.75189 * 289.80985 * 19 17 16 22 22 C 1.51649 * 101.94914 * 266.91555 * 21 19 17 23 23 C 1.37750 * 132.14344 * 164.38274 * 22 21 19 24 24 C 1.38535 * 119.96053 * 180.90357 * 23 22 21 25 25 F 1.35102 * 120.14438 * 179.72488 * 24 23 22 26 26 C 1.38476 * 119.71416 * 359.97438 * 24 23 22 27 27 C 1.37930 * 120.32494 * 359.81367 * 26 24 23 28 28 C 1.38861 * 107.05261 * 344.85448 * 22 21 19 29 29 O 1.36195 * 111.21221 * 358.56285 * 28 22 21 30 30 C 1.53773 * 87.17648 * 334.61202 * 13 12 10 31 31 H 0.96997 * 120.00528 * 0.02562 * 1 2 3 32 32 H 0.97006 * 119.99574 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.61293 * 25.44182 * 12 10 9 34 34 H 1.08996 * 113.61975 * 254.53543 * 12 10 9 35 35 H 1.08997 * 109.47622 * 63.47226 * 15 13 12 36 36 H 1.08997 * 109.46924 * 303.46729 * 15 13 12 37 37 H 0.97001 * 119.99928 * 359.97438 * 16 15 13 38 38 H 1.08990 * 110.93863 * 148.75255 * 21 19 17 39 39 H 1.09001 * 110.93276 * 25.07576 * 21 19 17 40 40 H 1.08003 * 120.02078 * 0.88453 * 23 22 21 41 41 H 1.08007 * 119.83531 * 179.81631 * 26 24 23 42 42 H 1.07994 * 119.86327 * 179.97438 * 27 26 24 43 43 H 1.08996 * 113.61792 * 139.93919 * 30 13 12 44 44 H 1.09009 * 113.61337 * 270.84526 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 0.4060 12 6 1.2603 -4.8288 0.5961 13 6 1.8482 -5.6975 -0.5284 14 1 2.7980 -6.1646 -0.2682 15 6 0.8451 -6.6852 -1.1279 16 7 1.5182 -7.5188 -2.1270 17 6 0.8267 -8.4669 -2.7899 18 8 -0.3527 -8.6303 -2.5590 19 6 1.5192 -9.3249 -3.8172 20 1 2.4094 -9.7916 -3.3955 21 6 1.8780 -8.4950 -5.0726 22 6 0.6718 -8.7316 -5.9607 23 6 0.2115 -8.0844 -7.0862 24 6 -0.9544 -8.5106 -7.7012 25 9 -1.4122 -7.8751 -8.8020 26 6 -1.6514 -9.5875 -7.1797 27 6 -1.1882 -10.2383 -6.0552 28 6 -0.0153 -9.8171 -5.4336 29 8 0.6214 -10.3192 -4.3393 30 6 2.0013 -4.4033 -1.3447 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 0.1800 -4.7002 0.5290 34 1 1.5917 -5.1211 1.5924 35 1 0.0323 -6.1349 -1.6019 36 1 0.4425 -7.3188 -0.3377 37 1 2.4615 -7.3884 -2.3115 38 1 2.7869 -8.8715 -5.5417 39 1 1.9781 -7.4382 -4.8252 40 1 0.7591 -7.2451 -7.4888 41 1 -2.5623 -9.9195 -7.6558 42 1 -1.7379 -11.0771 -5.6546 43 1 2.9301 -4.3527 -1.9128 44 1 1.1238 -4.1582 -1.9432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086214244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:49 Heat of formation + Delta-G solvation = -74.863071 kcal Electronic energy + Delta-G solvation = -27553.831410 eV Core-core repulsion = 23386.096975 eV Total energy + Delta-G solvation = -4167.734435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.91021 -42.61116 -40.59531 -39.66018 -38.14846 -36.09837 -35.10884 -33.89847 -32.23900 -31.00684 -30.69919 -28.56937 -26.44840 -26.07213 -25.22611 -23.64709 -22.95633 -22.45778 -21.78631 -20.51645 -19.23160 -18.90086 -18.55446 -18.34213 -17.84528 -17.13601 -16.80867 -16.58816 -16.50119 -16.18223 -15.86924 -15.62929 -15.28657 -15.20916 -14.95896 -14.50773 -14.45458 -14.17928 -14.00170 -13.83962 -13.49644 -13.42945 -13.22847 -13.06386 -12.92034 -12.78062 -12.62265 -12.50952 -12.20364 -12.06598 -11.89858 -11.58730 -11.53608 -11.11228 -10.87547 -10.77664 -10.17005 -10.10439 -9.15349 -8.97096 -7.94265 -5.22579 0.00100 0.08277 1.40009 1.47589 1.49120 1.57539 1.79288 2.25340 2.47715 2.57074 3.02556 3.29670 3.37669 3.47303 3.55980 3.75034 3.75883 3.76087 3.94386 4.02239 4.09276 4.17973 4.26984 4.36422 4.42468 4.43919 4.55378 4.61821 4.66007 4.76856 4.82617 4.98590 4.99811 5.00225 5.05289 5.05888 5.16429 5.23261 5.33173 5.41809 5.44022 5.53410 5.74882 5.96355 6.28158 6.47216 7.14358 7.33465 8.12441 8.33389 9.29413 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.002229 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.157409 B =12556.458156 C =13878.757392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.083 0.917 12 C -0.140 4.140 13 C -0.092 4.092 14 H 0.128 0.872 15 C 0.138 3.862 16 N -0.701 5.701 17 C 0.488 3.512 18 O -0.578 6.578 19 C 0.066 3.934 20 H 0.191 0.809 21 C -0.091 4.091 22 C -0.156 4.156 23 C -0.109 4.109 24 C 0.052 3.948 25 F -0.145 7.145 26 C -0.117 4.117 27 C -0.116 4.116 28 C 0.080 3.920 29 O -0.288 6.288 30 C -0.153 4.153 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.422 0.578 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.073 0.927 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -24.851 -12.548 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.033 3.967 11 H 0.101 0.899 12 C -0.179 4.179 13 C -0.111 4.111 14 H 0.146 0.854 15 C 0.014 3.986 16 N -0.355 5.355 17 C 0.274 3.726 18 O -0.457 6.457 19 C 0.007 3.993 20 H 0.208 0.792 21 C -0.128 4.128 22 C -0.157 4.157 23 C -0.127 4.127 24 C 0.033 3.967 25 F -0.123 7.123 26 C -0.135 4.135 27 C -0.134 4.134 28 C 0.035 3.965 29 O -0.201 6.201 30 C -0.193 4.193 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.260 0.740 38 H 0.164 0.836 39 H 0.129 0.871 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.092 0.908 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.913 -25.014 -12.279 28.710 hybrid contribution -0.399 1.582 -0.204 1.644 sum 6.514 -23.432 -12.483 27.337 Atomic orbital electron populations 1.69825 1.06776 1.25984 1.59876 1.25602 0.96337 1.01293 1.04063 0.85149 0.77805 0.79527 0.77359 1.21546 1.22588 1.19046 1.19741 0.91637 0.85326 1.40480 0.90126 1.42661 1.05340 1.01345 1.87505 1.22016 0.95646 0.83734 0.95349 0.89920 1.23342 0.99788 0.96146 0.98651 1.22471 0.99481 0.92833 0.96317 0.85404 1.21229 0.94976 0.91944 0.90448 1.45771 1.14686 1.34861 1.40185 1.21526 0.87277 0.81194 0.82592 1.90745 1.17985 1.70068 1.66917 1.23701 0.92775 0.89037 0.93831 0.79215 1.21948 0.97174 1.02875 0.90786 1.20831 0.98706 0.98278 0.97907 1.20423 0.95688 1.01235 0.95375 1.17643 0.96354 0.95642 0.87104 1.91487 1.88678 1.81225 1.50938 1.21102 1.01353 0.94795 0.96285 1.20355 0.93520 1.03062 0.96485 1.19879 0.93638 0.94484 0.88507 1.86938 1.55256 1.36539 1.41356 1.23739 1.01163 0.95973 0.98446 0.94162 0.79786 0.91888 0.90275 0.93961 0.91705 0.74046 0.83634 0.87099 0.82743 0.81715 0.83089 0.90786 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.04 9.97 84.03 0.84 -12.20 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -36.09 5.40 -320.18 -1.73 -37.82 16 10 C 0.14 5.08 4.48 45.58 0.20 5.28 16 11 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 12 C -0.14 -4.04 7.40 31.12 0.23 -3.81 16 13 C -0.09 -1.97 3.75 -10.27 -0.04 -2.01 16 14 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.14 3.12 5.50 86.38 0.47 3.60 16 16 N -0.70 -11.64 5.55 -463.06 -2.57 -14.21 16 17 C 0.49 10.49 7.03 87.66 0.62 11.11 16 18 O -0.58 -19.19 16.45 15.16 0.25 -18.94 16 19 C 0.07 0.90 4.11 30.43 0.13 1.02 16 20 H 0.19 0.76 8.14 -2.39 -0.02 0.74 16 21 C -0.09 -0.94 6.64 30.73 0.20 -0.74 16 22 C -0.16 -2.82 6.26 -19.53 -0.12 -2.94 16 23 C -0.11 -1.99 10.02 22.23 0.22 -1.77 16 24 C 0.05 1.04 7.31 22.40 0.16 1.21 16 25 F -0.14 -3.12 17.27 44.97 0.78 -2.34 16 26 C -0.12 -2.09 10.00 22.25 0.22 -1.86 16 27 C -0.12 -2.25 10.06 22.44 0.23 -2.02 16 28 C 0.08 1.71 6.82 22.67 0.15 1.86 16 29 O -0.29 -6.04 10.44 -77.57 -0.81 -6.85 16 30 C -0.15 -4.41 7.45 31.18 0.23 -4.18 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.37 20.10 7.92 -92.70 -0.73 19.36 16 33 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.22 7.87 -2.39 -0.02 1.21 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.42 3.57 8.47 -92.71 -0.79 2.78 16 38 H 0.15 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.11 1.01 7.91 -2.39 -0.02 0.99 16 40 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.81 7.92 -2.38 -0.02 1.79 16 Total: -1.00 -78.53 376.78 1.97 -76.56 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.48 Total: 27.31 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 4.22 Total: -11.63 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.02 Total: -111.80 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.56 Total: -25.80 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.53 1.97 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086214244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.699 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds