Wall clock time and date at job start Tue Mar 31 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09002 * 112.85201 * 24.07928 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.27848 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08994 * 113.61502 * 270.88324 * 13 12 10 15 15 C 1.53002 * 113.61128 * 140.06614 * 13 12 10 16 16 N 1.46502 * 109.47170 * 174.99685 * 15 13 12 17 17 C 1.34771 * 120.00395 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99747 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00305 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.66516 * 304.30406 * 19 17 16 21 21 C 1.54702 * 110.75019 * 67.52139 * 19 17 16 22 22 C 1.52149 * 101.70534 * 93.09257 * 21 19 17 23 23 C 1.37756 * 132.09800 * 195.88731 * 22 21 19 24 24 C 1.38535 * 119.95325 * 179.06793 * 23 22 21 25 25 F 1.35097 * 120.14214 * 179.97438 * 24 23 22 26 26 C 1.38476 * 119.71282 * 359.97438 * 24 23 22 27 27 C 1.37930 * 120.32568 * 0.19142 * 26 24 23 28 28 C 1.38857 * 107.08410 * 15.39670 * 22 21 19 29 29 O 1.36193 * 111.22526 * 1.06722 * 28 22 21 30 30 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 31 31 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 34 34 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 35 35 H 1.08999 * 109.47522 * 294.99880 * 15 13 12 36 36 H 1.09001 * 109.47358 * 54.99783 * 15 13 12 37 37 H 0.97004 * 119.99730 * 0.02562 * 16 15 13 38 38 H 1.08998 * 110.93812 * 211.19391 * 21 19 17 39 39 H 1.09005 * 110.93301 * 334.87697 * 21 19 17 40 40 H 1.08000 * 120.02246 * 359.05003 * 23 22 21 41 41 H 1.08000 * 119.83605 * 180.21088 * 26 24 23 42 42 H 1.08001 * 119.86170 * 180.02562 * 27 26 24 43 43 H 1.08999 * 113.61239 * 220.01646 * 30 13 12 44 44 H 1.08999 * 113.61926 * 89.11880 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0654 -3.5658 0.4010 12 6 1.2598 -4.8316 0.5846 13 6 0.7206 -5.0752 -0.8347 14 1 -0.1900 -4.5191 -1.0573 15 6 0.6179 -6.5561 -1.2054 16 7 -0.0135 -6.6876 -2.5208 17 6 -0.2087 -7.9092 -3.0556 18 8 0.1379 -8.8997 -2.4476 19 6 -0.8577 -8.0444 -4.4089 20 1 -1.8273 -7.5468 -4.4220 21 6 0.0628 -7.4804 -5.5170 22 6 0.8145 -8.7274 -5.9583 23 6 1.9655 -8.8996 -6.6954 24 6 2.4471 -10.1756 -6.9380 25 9 3.5752 -10.3489 -7.6608 26 6 1.7671 -11.2728 -6.4365 27 6 0.6129 -11.1004 -5.7014 28 6 0.1201 -9.8208 -5.4578 29 8 -0.9906 -9.4286 -4.7741 30 6 1.9994 -4.3960 -1.3523 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 1.8865 -5.6411 0.9586 34 1 0.4932 -4.5250 1.2963 35 1 1.6160 -6.9931 -1.2362 36 1 0.0163 -7.0764 -0.4600 37 1 -0.2904 -5.8953 -3.0073 38 1 -0.5236 -7.0670 -6.3375 39 1 0.7458 -6.7330 -5.1129 40 1 2.4919 -8.0403 -7.0840 41 1 2.1427 -12.2683 -6.6216 42 1 0.0888 -11.9613 -5.3135 43 1 1.8299 -3.7378 -2.2045 44 1 2.8283 -5.0865 -1.5080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086494633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:54 Heat of formation + Delta-G solvation = -72.108837 kcal Electronic energy + Delta-G solvation = -27630.598338 eV Core-core repulsion = 23462.983336 eV Total energy + Delta-G solvation = -4167.615002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.89800 -42.60043 -40.62978 -39.72970 -38.14924 -36.06369 -35.05438 -33.87963 -32.13488 -30.99064 -30.68519 -28.58879 -26.43040 -25.96699 -25.24997 -23.66728 -23.07114 -22.91679 -21.73250 -19.95485 -19.38587 -18.94344 -18.54417 -18.33694 -17.83806 -17.03926 -16.75690 -16.64263 -16.51862 -16.13539 -15.77819 -15.67907 -15.30866 -15.20102 -14.80080 -14.60636 -14.45113 -14.23788 -14.01783 -13.83568 -13.76125 -13.48609 -13.28942 -12.97305 -12.92582 -12.79352 -12.63250 -12.49739 -12.12455 -12.04905 -11.88954 -11.54719 -11.47050 -11.04805 -10.89169 -10.73704 -10.16535 -10.10027 -9.15182 -8.98786 -7.95049 -5.22797 0.00693 0.09071 1.39554 1.48546 1.49515 1.58963 1.79000 2.25342 2.48141 2.56225 3.01540 3.28514 3.37849 3.47256 3.55322 3.72548 3.75161 3.79438 3.89695 4.02828 4.08771 4.15937 4.17911 4.33161 4.40855 4.43608 4.59878 4.65710 4.72453 4.76410 4.81619 4.93677 5.00249 5.00524 5.05905 5.11622 5.18056 5.25405 5.35510 5.43970 5.48026 5.54838 5.67124 5.96649 6.29155 6.43823 7.09751 7.34468 8.11454 8.33817 9.28277 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002119 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.855494 B =13211.646078 C =13862.762290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.100 4.100 14 H 0.087 0.913 15 C 0.140 3.860 16 N -0.707 5.707 17 C 0.492 3.508 18 O -0.574 6.574 19 C 0.063 3.937 20 H 0.183 0.817 21 C -0.091 4.091 22 C -0.155 4.155 23 C -0.107 4.107 24 C 0.054 3.946 25 F -0.143 7.143 26 C -0.115 4.115 27 C -0.115 4.115 28 C 0.079 3.921 29 O -0.289 6.289 30 C -0.152 4.152 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.151 0.849 43 H 0.053 0.947 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -20.654 -14.685 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.033 3.967 11 H 0.075 0.925 12 C -0.176 4.176 13 C -0.118 4.118 14 H 0.105 0.895 15 C 0.017 3.983 16 N -0.360 5.360 17 C 0.278 3.722 18 O -0.453 6.453 19 C 0.003 3.997 20 H 0.199 0.801 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.125 4.125 24 C 0.035 3.965 25 F -0.122 7.122 26 C -0.134 4.134 27 C -0.133 4.133 28 C 0.034 3.966 29 O -0.201 6.201 30 C -0.192 4.192 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.254 0.746 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.173 0.827 41 H 0.184 0.816 42 H 0.169 0.831 43 H 0.072 0.928 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.126 -21.350 -14.186 25.634 hybrid contribution 0.081 1.435 -0.052 1.439 sum -0.045 -19.915 -14.238 24.481 Atomic orbital electron populations 1.69807 1.06463 1.25957 1.59605 1.25509 0.96372 1.00910 1.03859 0.85122 0.78267 0.80081 0.76587 1.19177 1.22027 1.22303 1.19681 0.91475 0.85187 1.40811 0.90678 1.42292 1.05345 1.00479 1.87605 1.21383 0.94971 0.84935 0.95441 0.92476 1.23357 1.00004 0.98632 0.95624 1.22488 0.98538 0.93463 0.97354 0.89476 1.21309 0.97688 0.95736 0.83592 1.45894 1.61326 1.08113 1.20641 1.21390 0.78940 0.83385 0.88489 1.90723 1.52122 1.38758 1.63658 1.23647 1.03844 0.81297 0.90876 0.80063 1.22025 0.97485 0.95257 0.98055 1.20886 0.97233 0.95942 1.01557 1.20412 0.95776 0.96930 0.99426 1.17604 0.85960 0.94538 0.98403 1.91488 1.48845 1.96250 1.75631 1.21100 0.94660 0.99726 0.97873 1.20356 0.96465 0.95127 1.01361 1.19899 0.87785 0.95281 0.93655 1.86940 1.35149 1.27908 1.70118 1.23697 0.97202 0.99159 0.99184 0.94033 0.79253 0.87948 0.92358 0.91698 0.91918 0.74596 0.84154 0.86991 0.82679 0.81580 0.83086 0.92849 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 44.75 29.55 68.60 2.03 46.77 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.24 -12.78 9.97 84.03 0.84 -11.94 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 9 N -0.72 -34.09 5.31 -320.44 -1.70 -35.79 16 10 C 0.14 5.17 4.56 45.52 0.21 5.38 16 11 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 12 C -0.14 -3.94 7.39 31.12 0.23 -3.71 16 13 C -0.10 -2.56 3.63 -10.27 -0.04 -2.59 16 14 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.14 3.19 5.51 86.38 0.48 3.66 16 16 N -0.71 -13.49 5.48 -463.06 -2.54 -16.03 16 17 C 0.49 11.08 7.04 87.66 0.62 11.70 16 18 O -0.57 -18.59 16.49 15.19 0.25 -18.34 16 19 C 0.06 0.98 4.10 30.43 0.12 1.11 16 20 H 0.18 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.09 -1.08 6.68 30.89 0.21 -0.88 16 22 C -0.16 -2.77 6.27 -19.37 -0.12 -2.89 16 23 C -0.11 -1.85 10.02 22.23 0.22 -1.62 16 24 C 0.05 1.00 7.31 22.40 0.16 1.17 16 25 F -0.14 -2.82 17.27 44.97 0.78 -2.05 16 26 C -0.12 -1.89 10.00 22.25 0.22 -1.67 16 27 C -0.11 -2.12 10.06 22.44 0.23 -1.89 16 28 C 0.08 1.67 6.86 22.67 0.16 1.82 16 29 O -0.29 -6.33 10.42 -77.53 -0.81 -7.14 16 30 C -0.15 -4.42 7.43 31.12 0.23 -4.19 16 31 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.38 18.99 7.90 -92.71 -0.73 18.26 16 33 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.42 5.82 8.47 -92.71 -0.79 5.03 16 38 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.16 7.85 -2.38 -0.02 1.14 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 2.24 7.90 -2.39 -0.02 2.22 16 Total: -1.00 -72.38 376.59 2.05 -70.34 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.47 Total: 29.19 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 4.23 Total: -10.20 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.96 Total: -108.57 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.56 Total: -25.48 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.38 2.05 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086494633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.771 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds