Wall clock time and date at job start Tue Mar 31 2020 18:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48496 * 109.47005 * 239.99873 * 3 2 1 5 5 H 1.48496 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46820 * 120.00187 * 3 2 1 7 7 C 1.38812 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00310 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00318 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.90808 * 23.74436 * 10 9 7 12 12 C 1.53780 * 113.61777 * 155.00082 * 10 9 7 13 13 C 1.53771 * 87.08445 * 89.11534 * 12 10 9 14 14 H 1.09001 * 113.62013 * 270.80325 * 13 12 10 15 15 C 1.52995 * 113.61807 * 139.98137 * 13 12 10 16 16 N 1.46496 * 109.47845 * 176.52875 * 15 13 12 17 17 C 1.34774 * 120.00565 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00041 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.66639 * 53.23506 * 19 17 16 21 21 C 1.54701 * 110.75345 * 289.81258 * 19 17 16 22 22 C 1.51653 * 101.95026 * 266.91980 * 21 19 17 23 23 C 1.37752 * 132.14218 * 164.38724 * 22 21 19 24 24 C 1.38533 * 119.95949 * 180.90260 * 23 22 21 25 25 F 1.35104 * 120.14426 * 180.02562 * 24 23 22 26 26 C 1.38482 * 119.71583 * 0.27291 * 24 23 22 27 27 C 1.37940 * 120.31559 * 359.25497 * 26 24 23 28 28 C 1.38860 * 107.05184 * 344.85584 * 22 21 19 29 29 O 1.36204 * 111.20994 * 358.56016 * 28 22 21 30 30 C 1.53780 * 87.17428 * 25.39154 * 13 12 10 31 31 H 0.97009 * 119.99785 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00177 * 359.97438 * 9 7 2 33 33 H 1.09003 * 113.61150 * 334.56229 * 12 10 9 34 34 H 1.09001 * 113.68925 * 203.67669 * 12 10 9 35 35 H 1.09005 * 109.46966 * 56.52972 * 15 13 12 36 36 H 1.09001 * 109.47204 * 296.53214 * 15 13 12 37 37 H 0.97008 * 119.99375 * 0.02562 * 16 15 13 38 38 H 1.08998 * 110.93908 * 148.75717 * 21 19 17 39 39 H 1.09003 * 110.93333 * 25.08087 * 21 19 17 40 40 H 1.08004 * 120.02420 * 0.88414 * 23 22 21 41 41 H 1.08002 * 119.83724 * 179.51942 * 26 24 23 42 42 H 1.07996 * 119.85657 * 180.30966 * 27 26 24 43 43 H 1.09003 * 113.61521 * 89.15283 * 30 13 12 44 44 H 1.09000 * 113.62099 * 220.06232 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0027 11 1 3.0659 -3.5652 0.4016 12 6 1.2598 -4.8294 0.5917 13 6 0.7201 -5.0784 -0.8265 14 1 -0.1914 -4.5242 -1.0505 15 6 0.6192 -6.5605 -1.1925 16 7 0.0206 -6.6955 -2.5227 17 6 -0.1674 -7.9188 -3.0562 18 8 0.1587 -8.9080 -2.4348 19 6 -0.7826 -8.0576 -4.4249 20 1 -0.2419 -7.4527 -5.1528 21 6 -2.2813 -7.6752 -4.3935 22 6 -2.9438 -9.0199 -4.1640 23 6 -4.2151 -9.3676 -3.7635 24 6 -4.5528 -10.7029 -3.6151 25 9 -5.7987 -11.0482 -3.2230 26 6 -3.6062 -11.6823 -3.8654 27 6 -2.3360 -11.3343 -4.2757 28 6 -1.9908 -9.9941 -4.4307 29 8 -0.8147 -9.4363 -4.8315 30 6 1.9975 -4.4004 -1.3495 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0016 33 1 0.4935 -4.5201 1.3025 34 1 1.8855 -5.6382 0.9690 35 1 -0.0037 -7.0740 -0.4600 36 1 1.6155 -7.0026 -1.1958 37 1 -0.2399 -5.9043 -3.0199 38 1 -2.5934 -7.2447 -5.3450 39 1 -2.4917 -6.9919 -3.5707 40 1 -4.9482 -8.5997 -3.5651 41 1 -3.8650 -12.7236 -3.7427 42 1 -1.6051 -12.1043 -4.4736 43 1 2.8264 -5.0911 -1.5044 44 1 1.8258 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086494634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:58 Heat of formation + Delta-G solvation = -51.823867 kcal Electronic energy + Delta-G solvation = -27525.605972 eV Core-core repulsion = 23358.870592 eV Total energy + Delta-G solvation = -4166.735380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.14481 -41.88090 -39.58156 -38.51668 -37.39561 -34.83226 -33.48111 -33.05781 -30.61822 -30.07921 -29.83013 -27.43269 -25.13990 -24.85593 -23.67445 -22.90604 -22.27939 -21.77898 -20.83558 -18.74048 -18.08346 -17.83069 -17.62529 -17.27432 -17.10091 -16.01177 -15.96983 -15.69025 -15.16937 -14.97839 -14.72809 -14.56749 -14.18909 -13.95208 -13.83160 -13.56987 -13.39637 -13.26613 -13.12457 -12.93562 -12.77991 -12.37551 -12.14615 -11.98433 -11.73360 -11.46320 -11.22960 -11.10104 -10.87510 -10.56104 -10.26295 -10.19812 -9.87527 -9.74592 -9.55716 -9.45005 -9.14900 -8.93639 -8.40967 -7.06057 -5.86088 -3.15304 0.70327 0.79467 2.25580 2.58044 3.04628 3.17758 3.38680 3.43532 3.44197 3.67549 3.93892 4.13776 4.34811 4.38091 4.51033 4.63962 4.69572 4.78601 4.96993 4.97815 5.07216 5.12234 5.15648 5.23649 5.39625 5.42691 5.53639 5.62425 5.66838 5.74632 5.78651 5.87178 5.87415 6.02668 6.12947 6.14772 6.26498 6.30845 6.51703 6.66843 6.67539 6.82338 6.97284 7.29042 7.63609 7.97279 8.33115 9.43827 10.00823 10.35028 11.36216 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.001995 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.882142 B =14034.743608 C =14530.225817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.717 5.717 17 C 0.493 3.507 18 O -0.524 6.524 19 C 0.063 3.937 20 H 0.146 0.854 21 C -0.099 4.099 22 C -0.147 4.147 23 C -0.101 4.101 24 C 0.068 3.932 25 F -0.138 7.138 26 C -0.116 4.116 27 C -0.104 4.104 28 C 0.106 3.894 29 O -0.270 6.270 30 C -0.169 4.169 31 H 0.257 0.743 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.404 0.596 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 -20.734 -10.853 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.112 0.888 15 C 0.008 3.992 16 N -0.370 5.370 17 C 0.277 3.723 18 O -0.399 6.399 19 C 0.003 3.997 20 H 0.164 0.836 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.120 4.120 24 C 0.049 3.951 25 F -0.117 7.117 26 C -0.135 4.135 27 C -0.123 4.123 28 C 0.061 3.939 29 O -0.182 6.182 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.276 -21.382 -10.475 24.623 hybrid contribution -0.298 1.373 -0.151 1.413 sum -6.574 -20.009 -10.626 23.590 Atomic orbital electron populations 1.69649 1.05144 1.25949 1.57347 1.24764 0.95550 0.97813 1.02701 0.86239 0.78527 0.83325 0.77922 1.21198 1.21666 1.21175 1.19244 0.91103 0.83964 1.43167 0.91031 1.42159 1.05659 0.99425 1.87144 1.21083 0.95135 0.85574 0.92685 0.91925 1.23443 1.00536 0.99736 0.95043 1.22716 0.99657 0.92708 0.98760 0.88834 1.21530 0.98105 0.97273 0.82269 1.46001 1.63311 1.07637 1.20038 1.20778 0.79582 0.84041 0.87860 1.90745 1.49980 1.37347 1.61852 1.23391 0.97684 0.82760 0.95867 0.83643 1.21808 0.91087 0.95370 1.05349 1.20483 0.94227 0.95331 1.04791 1.20189 0.96048 0.95005 1.00722 1.17366 0.80798 0.92945 1.03988 1.91506 1.38581 1.92790 1.88780 1.20864 0.92152 0.99824 1.00684 1.20081 0.96689 0.93113 1.02372 1.19550 0.85237 0.93727 0.95417 1.86971 1.35925 1.23949 1.71386 1.23925 0.95615 0.99629 1.01817 0.93362 0.78124 0.91283 0.90443 0.91725 0.91376 0.76165 0.87170 0.87870 0.84236 0.83754 0.84172 0.91387 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.75 5.31 -52.55 -0.28 -17.03 16 10 C 0.17 3.12 4.57 -67.03 -0.31 2.81 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 13 C -0.12 -1.64 3.62 -89.82 -0.33 -1.97 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 15 C 0.13 1.62 5.50 -4.05 -0.02 1.60 16 16 N -0.72 -7.62 5.55 -60.30 -0.33 -7.95 16 17 C 0.49 5.95 7.03 -10.99 -0.08 5.87 16 18 O -0.52 -8.63 16.45 -13.48 -0.22 -8.85 16 19 C 0.06 0.56 4.11 -26.99 -0.11 0.45 16 20 H 0.15 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.10 -0.72 6.64 -26.52 -0.18 -0.90 16 22 C -0.15 -1.43 6.26 -104.10 -0.65 -2.08 16 23 C -0.10 -0.93 10.02 -39.65 -0.40 -1.33 16 24 C 0.07 0.66 7.31 -39.38 -0.29 0.37 16 25 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 26 C -0.12 -1.01 10.00 -39.60 -0.40 -1.40 16 27 C -0.10 -0.99 10.06 -39.31 -0.40 -1.39 16 28 C 0.11 1.17 6.82 -38.97 -0.27 0.90 16 29 O -0.27 -3.11 10.44 -39.43 -0.41 -3.52 16 30 C -0.17 -2.61 7.44 -25.83 -0.19 -2.81 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.38 9.65 7.90 -40.82 -0.32 9.33 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.40 3.36 8.47 -40.82 -0.35 3.02 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.68 7.91 -51.93 -0.41 0.27 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -33.05 376.63 -9.96 -43.02 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.09 Total: 9.19 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -4.04 Total: -9.40 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.11 Total: -51.43 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.63 Total: -12.37 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.05 -9.96 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086494634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.804 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds