Wall clock time and date at job start Tue Mar 31 2020 18:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48496 * 109.47005 * 239.99873 * 3 2 1 5 5 H 1.48496 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46820 * 120.00187 * 3 2 1 7 7 C 1.38812 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00310 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00318 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.90808 * 23.74436 * 10 9 7 12 12 C 1.53780 * 113.61777 * 155.00082 * 10 9 7 13 13 C 1.53771 * 87.08445 * 89.11534 * 12 10 9 14 14 H 1.09001 * 113.62013 * 270.80325 * 13 12 10 15 15 C 1.52995 * 113.61807 * 139.98137 * 13 12 10 16 16 N 1.46496 * 109.47845 * 176.52875 * 15 13 12 17 17 C 1.34774 * 120.00565 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00041 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.66639 * 53.23506 * 19 17 16 21 21 C 1.54701 * 110.75345 * 289.81258 * 19 17 16 22 22 C 1.51653 * 101.95026 * 266.91980 * 21 19 17 23 23 C 1.37752 * 132.14218 * 164.38724 * 22 21 19 24 24 C 1.38533 * 119.95949 * 180.90260 * 23 22 21 25 25 F 1.35104 * 120.14426 * 180.02562 * 24 23 22 26 26 C 1.38482 * 119.71583 * 0.27291 * 24 23 22 27 27 C 1.37940 * 120.31559 * 359.25497 * 26 24 23 28 28 C 1.38860 * 107.05184 * 344.85584 * 22 21 19 29 29 O 1.36204 * 111.20994 * 358.56016 * 28 22 21 30 30 C 1.53780 * 87.17428 * 25.39154 * 13 12 10 31 31 H 0.97009 * 119.99785 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00177 * 359.97438 * 9 7 2 33 33 H 1.09003 * 113.61150 * 334.56229 * 12 10 9 34 34 H 1.09001 * 113.68925 * 203.67669 * 12 10 9 35 35 H 1.09005 * 109.46966 * 56.52972 * 15 13 12 36 36 H 1.09001 * 109.47204 * 296.53214 * 15 13 12 37 37 H 0.97008 * 119.99375 * 0.02562 * 16 15 13 38 38 H 1.08998 * 110.93908 * 148.75717 * 21 19 17 39 39 H 1.09003 * 110.93333 * 25.08087 * 21 19 17 40 40 H 1.08004 * 120.02420 * 0.88414 * 23 22 21 41 41 H 1.08002 * 119.83724 * 179.51942 * 26 24 23 42 42 H 1.07996 * 119.85657 * 180.30966 * 27 26 24 43 43 H 1.09003 * 113.61521 * 89.15283 * 30 13 12 44 44 H 1.09000 * 113.62099 * 220.06232 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0027 11 1 3.0659 -3.5652 0.4016 12 6 1.2598 -4.8294 0.5917 13 6 0.7201 -5.0784 -0.8265 14 1 -0.1914 -4.5242 -1.0505 15 6 0.6192 -6.5605 -1.1925 16 7 0.0206 -6.6955 -2.5227 17 6 -0.1674 -7.9188 -3.0562 18 8 0.1587 -8.9080 -2.4348 19 6 -0.7826 -8.0576 -4.4249 20 1 -0.2419 -7.4527 -5.1528 21 6 -2.2813 -7.6752 -4.3935 22 6 -2.9438 -9.0199 -4.1640 23 6 -4.2151 -9.3676 -3.7635 24 6 -4.5528 -10.7029 -3.6151 25 9 -5.7987 -11.0482 -3.2230 26 6 -3.6062 -11.6823 -3.8654 27 6 -2.3360 -11.3343 -4.2757 28 6 -1.9908 -9.9941 -4.4307 29 8 -0.8147 -9.4363 -4.8315 30 6 1.9975 -4.4004 -1.3495 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0016 33 1 0.4935 -4.5201 1.3025 34 1 1.8855 -5.6382 0.9690 35 1 -0.0037 -7.0740 -0.4600 36 1 1.6155 -7.0026 -1.1958 37 1 -0.2399 -5.9043 -3.0199 38 1 -2.5934 -7.2447 -5.3450 39 1 -2.4917 -6.9919 -3.5707 40 1 -4.9482 -8.5997 -3.5651 41 1 -3.8650 -12.7236 -3.7427 42 1 -1.6051 -12.1043 -4.4736 43 1 2.8264 -5.0911 -1.5044 44 1 1.8258 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086494634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:58 Heat of formation + Delta-G solvation = -72.178443 kcal Electronic energy + Delta-G solvation = -27526.488612 eV Core-core repulsion = 23358.870592 eV Total energy + Delta-G solvation = -4167.618020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89853 -42.61605 -40.62731 -39.72029 -38.14976 -36.05817 -35.04520 -33.90116 -32.13458 -30.98647 -30.69259 -28.59344 -26.42787 -25.96737 -25.24561 -23.67082 -23.06176 -22.91552 -21.73227 -19.96803 -19.37874 -18.93113 -18.54721 -18.34385 -17.84291 -16.98984 -16.80696 -16.63887 -16.52838 -16.09657 -15.87056 -15.60341 -15.31109 -15.20057 -14.78577 -14.63573 -14.48327 -14.18800 -14.00347 -13.90552 -13.71219 -13.48934 -13.28632 -12.95798 -12.90995 -12.79147 -12.60932 -12.49349 -12.19336 -12.06938 -11.89471 -11.54350 -11.46177 -11.03983 -10.88425 -10.73165 -10.16308 -10.10097 -9.15049 -8.98541 -7.94452 -5.22317 0.00591 0.08857 1.38664 1.49328 1.51230 1.57337 1.79853 2.25229 2.47886 2.56784 3.02007 3.29173 3.38050 3.47195 3.54987 3.72878 3.75440 3.79772 3.89928 4.02725 4.08428 4.15810 4.18362 4.33322 4.40678 4.43761 4.59540 4.65342 4.72492 4.76097 4.81703 4.94123 5.00213 5.00545 5.05761 5.11832 5.17808 5.25923 5.35911 5.43640 5.47842 5.54865 5.67279 5.96476 6.29339 6.43885 7.09785 7.34701 8.11898 8.34244 9.28468 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.001995 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.882142 B =14034.743608 C =14530.225817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.100 4.100 14 H 0.086 0.914 15 C 0.140 3.860 16 N -0.706 5.706 17 C 0.492 3.508 18 O -0.573 6.573 19 C 0.063 3.937 20 H 0.183 0.817 21 C -0.092 4.092 22 C -0.155 4.155 23 C -0.107 4.107 24 C 0.054 3.946 25 F -0.143 7.143 26 C -0.115 4.115 27 C -0.114 4.114 28 C 0.080 3.920 29 O -0.289 6.289 30 C -0.152 4.152 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.417 0.583 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 -21.083 -11.815 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.033 3.967 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.118 4.118 14 H 0.105 0.895 15 C 0.017 3.983 16 N -0.359 5.359 17 C 0.278 3.722 18 O -0.453 6.453 19 C 0.004 3.996 20 H 0.200 0.800 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.126 4.126 24 C 0.035 3.965 25 F -0.122 7.122 26 C -0.134 4.134 27 C -0.133 4.133 28 C 0.034 3.966 29 O -0.201 6.201 30 C -0.192 4.192 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.254 0.746 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.173 0.827 41 H 0.184 0.816 42 H 0.169 0.831 43 H 0.108 0.892 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.849 -21.747 -11.455 25.265 hybrid contribution -0.371 1.389 0.182 1.449 sum -6.220 -20.358 -11.273 24.088 Atomic orbital electron populations 1.69795 1.06477 1.26118 1.59449 1.25517 0.96371 1.00942 1.03786 0.85249 0.77218 0.79383 0.78139 1.20369 1.22305 1.20637 1.19619 0.91491 0.85217 1.41126 0.90666 1.42276 1.05325 1.00474 1.87637 1.21416 0.94968 0.84904 0.95424 0.92430 1.23353 1.00009 0.98668 0.95602 1.22483 0.98555 0.93444 0.97363 0.89549 1.21304 0.98161 0.95707 0.83150 1.45886 1.62575 1.08064 1.19424 1.21391 0.78689 0.83381 0.88746 1.90723 1.52223 1.38909 1.63402 1.23657 0.99023 0.82359 0.94561 0.80039 1.21919 0.89374 0.94321 1.07263 1.20783 0.94111 0.96389 1.04342 1.20408 0.96412 0.95322 1.00435 1.17605 0.80816 0.93602 1.04504 1.91490 1.38937 1.92872 1.88921 1.21107 0.91589 1.00871 0.99789 1.20354 0.97309 0.93290 1.02351 1.19902 0.85595 0.94625 0.96437 1.86943 1.36410 1.25215 1.71555 1.23727 0.97221 0.99158 0.99133 0.94018 0.79275 0.92440 0.87923 0.92160 0.91489 0.74590 0.84123 0.87074 0.82683 0.81570 0.83073 0.89173 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -34.16 5.31 -320.17 -1.70 -35.86 16 10 C 0.14 5.18 4.57 45.58 0.21 5.39 16 11 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 12 C -0.14 -3.96 7.39 31.12 0.23 -3.73 16 13 C -0.10 -2.56 3.62 -10.27 -0.04 -2.60 16 14 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 15 C 0.14 3.19 5.50 86.38 0.47 3.67 16 16 N -0.71 -13.49 5.55 -463.07 -2.57 -16.06 16 17 C 0.49 11.07 7.03 87.66 0.62 11.69 16 18 O -0.57 -18.57 16.45 15.17 0.25 -18.32 16 19 C 0.06 0.99 4.11 30.43 0.13 1.12 16 20 H 0.18 1.43 8.14 -2.39 -0.02 1.41 16 21 C -0.09 -1.10 6.64 30.73 0.20 -0.90 16 22 C -0.16 -2.79 6.26 -19.53 -0.12 -2.91 16 23 C -0.11 -1.86 10.02 22.23 0.22 -1.64 16 24 C 0.05 1.01 7.31 22.40 0.16 1.17 16 25 F -0.14 -2.84 17.27 44.97 0.78 -2.06 16 26 C -0.12 -1.90 10.00 22.26 0.22 -1.68 16 27 C -0.11 -2.13 10.06 22.44 0.23 -1.90 16 28 C 0.08 1.69 6.82 22.66 0.15 1.84 16 29 O -0.29 -6.33 10.44 -77.67 -0.81 -7.14 16 30 C -0.15 -4.42 7.44 31.18 0.23 -4.19 16 31 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 32 H 0.37 19.03 7.90 -92.71 -0.73 18.30 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.59 7.87 -2.39 -0.02 1.57 16 37 H 0.42 5.83 8.47 -92.70 -0.79 5.05 16 38 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 1.16 7.91 -2.39 -0.02 1.15 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.38 376.63 2.01 -70.37 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.47 Total: 29.58 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.22 Total: -10.42 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.99 Total: -108.76 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.56 Total: -25.46 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.38 2.01 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086494634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.808 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds