Wall clock time and date at job start Tue Mar 31 2020 18:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47162 * 269.99393 * 3 2 1 5 5 H 1.48506 * 109.47293 * 29.99644 * 3 2 1 6 6 H 1.48497 * 109.47366 * 149.99638 * 3 2 1 7 7 C 1.38806 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99681 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00621 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00321 * 180.02562 * 9 7 2 11 11 H 1.08993 * 112.84964 * 23.80204 * 10 9 7 12 12 C 1.53783 * 113.61210 * 154.99591 * 10 9 7 13 13 C 1.53786 * 87.08050 * 89.20097 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.88070 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.06140 * 13 12 10 16 16 N 1.46503 * 109.46818 * 176.52755 * 15 13 12 17 17 C 1.34782 * 119.99635 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99718 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99778 * 179.97438 * 17 16 15 20 20 H 1.09004 * 110.67026 * 301.78456 * 19 17 16 21 21 C 1.54715 * 110.75096 * 65.00307 * 19 17 16 22 22 C 1.51641 * 101.91380 * 143.67350 * 21 19 17 23 23 C 1.37814 * 132.15625 * 164.29526 * 22 21 19 24 24 C 1.38315 * 120.02421 * 180.29674 * 23 22 21 25 25 C 1.38305 * 119.78546 * 0.04543 * 24 23 22 26 26 C 1.38097 * 120.31715 * 359.82986 * 25 24 23 27 27 F 1.35101 * 119.89731 * 180.02562 * 26 25 24 28 28 C 1.38788 * 107.04705 * 344.32813 * 22 21 19 29 29 O 1.36196 * 111.26101 * 359.35254 * 28 22 21 30 30 C 1.53781 * 87.17350 * 25.47154 * 13 12 10 31 31 H 0.96997 * 120.00198 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99652 * 359.97438 * 9 7 2 33 33 H 1.08992 * 113.61796 * 334.64954 * 12 10 9 34 34 H 1.09005 * 113.68996 * 203.75566 * 12 10 9 35 35 H 1.08997 * 109.46971 * 296.52802 * 15 13 12 36 36 H 1.09004 * 109.46713 * 56.53041 * 15 13 12 37 37 H 0.96996 * 120.00015 * 0.02562 * 16 15 13 38 38 H 1.08997 * 110.94267 * 261.83041 * 21 19 17 39 39 H 1.09000 * 110.93733 * 25.48008 * 21 19 17 40 40 H 1.08001 * 119.98366 * 0.34205 * 23 22 21 41 41 H 1.08005 * 120.11141 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.84059 * 179.82046 * 25 24 23 43 43 H 1.08999 * 113.61567 * 89.07405 * 30 13 12 44 44 H 1.08998 * 113.61196 * 219.97759 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5282 -3.2967 -0.4047 12 6 5.5263 -2.3655 -0.5940 13 6 6.0128 -2.0257 0.8248 14 1 5.9880 -0.9598 1.0513 15 6 7.3477 -2.6793 1.1880 16 7 7.7646 -2.2313 2.5190 17 6 8.9189 -2.6807 3.0505 18 8 9.6125 -3.4556 2.4265 19 6 9.3480 -2.2195 4.4194 20 1 9.4387 -1.1336 4.4486 21 6 8.3587 -2.7161 5.5003 22 6 9.2873 -3.0129 6.6618 23 6 9.0530 -3.2166 8.0045 24 6 10.1095 -3.4687 8.8609 25 6 11.3999 -3.5145 8.3653 26 6 11.6373 -3.3132 7.0198 27 9 12.9012 -3.3603 6.5446 28 6 10.5764 -3.0622 6.1499 29 8 10.5821 -2.8479 4.8049 30 6 4.7880 -2.7952 1.3469 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0007 33 1 5.6418 -1.5460 -1.3031 34 1 5.9134 -3.3113 -0.9734 35 1 7.2332 -3.7633 1.1887 36 1 8.1030 -2.3942 0.4555 37 1 7.2096 -1.6119 3.0182 38 1 7.6441 -1.9360 5.7623 39 1 7.8439 -3.6190 5.1718 40 1 8.0441 -3.1802 8.3880 41 1 9.9275 -3.6290 9.9134 42 1 12.2257 -3.7083 9.0336 43 1 4.9723 -3.8589 1.4976 44 1 4.3078 -2.3222 2.2035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086555551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:35 Heat of formation + Delta-G solvation = -45.852733 kcal Electronic energy + Delta-G solvation = -27492.094612 eV Core-core repulsion = 23325.618160 eV Total energy + Delta-G solvation = -4166.476452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.15668 -41.81655 -39.78670 -38.70764 -37.70069 -34.95144 -33.47444 -32.95160 -30.92119 -30.46565 -30.05255 -27.64906 -25.27978 -24.94830 -23.46458 -22.98781 -22.29181 -21.83244 -20.86393 -18.79371 -18.25261 -17.96664 -17.76428 -17.58178 -17.19782 -16.21764 -16.00655 -15.79806 -15.39839 -15.29605 -14.80532 -14.61549 -14.41768 -13.85345 -13.76149 -13.72037 -13.59827 -13.27955 -13.14531 -12.85806 -12.62404 -12.40441 -12.26459 -12.13721 -11.86031 -11.69222 -11.53490 -11.44565 -10.98065 -10.59462 -10.38601 -10.24673 -9.99450 -9.74252 -9.61652 -9.28017 -9.25767 -8.98441 -8.66893 -7.37759 -5.86251 -3.22931 0.58580 0.68740 2.14715 2.26592 2.94919 3.15091 3.27727 3.31644 3.37740 3.67481 3.80199 4.02480 4.31509 4.33805 4.49308 4.49693 4.65926 4.68951 4.79715 4.82111 4.84076 4.97955 5.08682 5.18201 5.31766 5.33837 5.40036 5.41175 5.56746 5.66575 5.70123 5.74712 5.81218 5.82647 5.95511 6.04206 6.13227 6.16669 6.39962 6.52727 6.58210 6.64163 6.80561 7.18902 7.88386 7.91323 8.33295 9.10809 9.82896 10.01847 11.31749 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.002101 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.557965 B =13324.821492 C =14048.773442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.173 3.827 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.124 4.124 14 H 0.091 0.909 15 C 0.132 3.868 16 N -0.717 5.717 17 C 0.516 3.484 18 O -0.517 6.517 19 C 0.062 3.938 20 H 0.117 0.883 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.076 4.076 24 C -0.118 4.118 25 C -0.120 4.120 26 C 0.085 3.915 27 F -0.134 7.134 28 C 0.073 3.927 29 O -0.266 6.266 30 C -0.167 4.167 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.154 -5.295 17.317 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.188 4.188 13 C -0.143 4.143 14 H 0.109 0.891 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.299 3.701 18 O -0.392 6.392 19 C 0.002 3.998 20 H 0.135 0.865 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.095 4.095 24 C -0.136 4.136 25 C -0.139 4.139 26 C 0.065 3.935 27 F -0.112 7.112 28 C 0.026 3.974 29 O -0.178 6.178 30 C -0.208 4.208 31 H 0.071 0.929 32 H 0.195 0.805 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.595 -5.962 16.619 27.894 hybrid contribution 0.476 1.649 0.229 1.731 sum 22.071 -4.313 16.848 28.100 Atomic orbital electron populations 1.69695 1.05099 1.25940 1.57080 1.24691 0.95258 0.97239 1.01852 0.86559 0.79070 0.84999 0.77866 1.20998 1.21668 1.20440 1.19105 0.80387 0.94848 1.43423 0.89015 1.42510 1.03965 1.01590 1.88880 1.21045 0.90092 0.89932 0.92836 0.91011 1.23463 0.98755 1.01693 0.94890 1.22771 0.92455 1.00117 0.98916 0.89115 1.21546 0.96087 0.99373 0.82097 1.45913 1.22347 1.48753 1.19994 1.19909 0.81721 0.81759 0.86674 1.90770 1.53020 1.33793 1.61588 1.23262 0.83606 0.99025 0.93881 0.86511 1.21817 0.97243 1.04019 0.90616 1.20614 0.92774 1.05777 0.95389 1.20432 1.00228 0.98066 0.90738 1.20945 0.91129 1.01138 1.00431 1.20952 0.99162 1.01534 0.92213 1.16958 0.77339 1.08310 0.90932 1.91522 1.36707 1.94254 1.88755 1.19588 0.93847 0.99726 0.84192 1.87026 1.37479 1.75606 1.17705 1.23908 0.96448 0.98809 1.01625 0.92939 0.80527 0.91352 0.89922 0.91094 0.91467 0.76171 0.87221 0.87876 0.84602 0.84132 0.83661 0.90900 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.13 27.74 -169.99 -4.71 16.42 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 7 C -0.25 -6.68 10.45 -15.06 -0.16 -6.84 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.73 -16.08 5.12 -52.50 -0.27 -16.35 16 10 C 0.17 3.02 4.57 -66.97 -0.31 2.71 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.88 16 12 C -0.15 -2.05 7.39 -25.92 -0.19 -2.25 16 13 C -0.12 -1.55 3.63 -89.80 -0.33 -1.87 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.50 5.50 -4.04 -0.02 1.48 16 16 N -0.72 -7.14 5.55 -60.29 -0.33 -7.48 16 17 C 0.52 6.17 7.13 -10.99 -0.08 6.09 16 18 O -0.52 -8.60 16.57 -13.50 -0.22 -8.82 16 19 C 0.06 0.59 4.05 -26.98 -0.11 0.48 16 20 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -0.72 6.63 -26.52 -0.18 -0.90 16 22 C -0.14 -1.22 6.27 -104.11 -0.65 -1.88 16 23 C -0.08 -0.49 10.03 -39.71 -0.40 -0.89 16 24 C -0.12 -0.67 10.07 -39.53 -0.40 -1.07 16 25 C -0.12 -0.85 9.99 -39.61 -0.40 -1.25 16 26 C 0.08 0.87 7.32 -39.17 -0.29 0.59 16 27 F -0.13 -1.60 17.27 2.25 0.04 -1.56 16 28 C 0.07 0.81 7.02 -38.92 -0.27 0.54 16 29 O -0.27 -3.47 10.39 -39.43 -0.41 -3.88 16 30 C -0.17 -2.39 7.45 -25.78 -0.19 -2.58 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.36 7.80 5.76 -40.82 -0.24 7.56 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.05 8.47 -40.82 -0.35 2.70 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.78 7.92 -51.93 -0.41 0.37 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.70 373.85 -9.61 -44.31 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.05 Total: 6.89 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -4.06 Total: -7.57 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.17 Total: -51.42 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.63 Total: -12.70 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.70 -9.61 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086555551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.540 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds