Wall clock time and date at job start Tue Mar 31 2020 18:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47162 * 269.99393 * 3 2 1 5 5 H 1.48506 * 109.47293 * 29.99644 * 3 2 1 6 6 H 1.48497 * 109.47366 * 149.99638 * 3 2 1 7 7 C 1.38806 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99681 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00621 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00321 * 180.02562 * 9 7 2 11 11 H 1.08993 * 112.84964 * 23.80204 * 10 9 7 12 12 C 1.53783 * 113.61210 * 154.99591 * 10 9 7 13 13 C 1.53786 * 87.08050 * 89.20097 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.88070 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.06140 * 13 12 10 16 16 N 1.46503 * 109.46818 * 176.52755 * 15 13 12 17 17 C 1.34782 * 119.99635 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99718 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99778 * 179.97438 * 17 16 15 20 20 H 1.09004 * 110.67026 * 301.78456 * 19 17 16 21 21 C 1.54715 * 110.75096 * 65.00307 * 19 17 16 22 22 C 1.51641 * 101.91380 * 143.67350 * 21 19 17 23 23 C 1.37814 * 132.15625 * 164.29526 * 22 21 19 24 24 C 1.38315 * 120.02421 * 180.29674 * 23 22 21 25 25 C 1.38305 * 119.78546 * 0.04543 * 24 23 22 26 26 C 1.38097 * 120.31715 * 359.82986 * 25 24 23 27 27 F 1.35101 * 119.89731 * 180.02562 * 26 25 24 28 28 C 1.38788 * 107.04705 * 344.32813 * 22 21 19 29 29 O 1.36196 * 111.26101 * 359.35254 * 28 22 21 30 30 C 1.53781 * 87.17350 * 25.47154 * 13 12 10 31 31 H 0.96997 * 120.00198 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99652 * 359.97438 * 9 7 2 33 33 H 1.08992 * 113.61796 * 334.64954 * 12 10 9 34 34 H 1.09005 * 113.68996 * 203.75566 * 12 10 9 35 35 H 1.08997 * 109.46971 * 296.52802 * 15 13 12 36 36 H 1.09004 * 109.46713 * 56.53041 * 15 13 12 37 37 H 0.96996 * 120.00015 * 0.02562 * 16 15 13 38 38 H 1.08997 * 110.94267 * 261.83041 * 21 19 17 39 39 H 1.09000 * 110.93733 * 25.48008 * 21 19 17 40 40 H 1.08001 * 119.98366 * 0.34205 * 23 22 21 41 41 H 1.08005 * 120.11141 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.84059 * 179.82046 * 25 24 23 43 43 H 1.08999 * 113.61567 * 89.07405 * 30 13 12 44 44 H 1.08998 * 113.61196 * 219.97759 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5282 -3.2967 -0.4047 12 6 5.5263 -2.3655 -0.5940 13 6 6.0128 -2.0257 0.8248 14 1 5.9880 -0.9598 1.0513 15 6 7.3477 -2.6793 1.1880 16 7 7.7646 -2.2313 2.5190 17 6 8.9189 -2.6807 3.0505 18 8 9.6125 -3.4556 2.4265 19 6 9.3480 -2.2195 4.4194 20 1 9.4387 -1.1336 4.4486 21 6 8.3587 -2.7161 5.5003 22 6 9.2873 -3.0129 6.6618 23 6 9.0530 -3.2166 8.0045 24 6 10.1095 -3.4687 8.8609 25 6 11.3999 -3.5145 8.3653 26 6 11.6373 -3.3132 7.0198 27 9 12.9012 -3.3603 6.5446 28 6 10.5764 -3.0622 6.1499 29 8 10.5821 -2.8479 4.8049 30 6 4.7880 -2.7952 1.3469 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0007 33 1 5.6418 -1.5460 -1.3031 34 1 5.9134 -3.3113 -0.9734 35 1 7.2332 -3.7633 1.1887 36 1 8.1030 -2.3942 0.4555 37 1 7.2096 -1.6119 3.0182 38 1 7.6441 -1.9360 5.7623 39 1 7.8439 -3.6190 5.1718 40 1 8.0441 -3.1802 8.3880 41 1 9.9275 -3.6290 9.9134 42 1 12.2257 -3.7083 9.0336 43 1 4.9723 -3.8589 1.4976 44 1 4.3078 -2.3222 2.2035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086555551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:34 Heat of formation + Delta-G solvation = -68.930512 kcal Electronic energy + Delta-G solvation = -27493.095339 eV Core-core repulsion = 23325.618160 eV Total energy + Delta-G solvation = -4167.477179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.93649 -42.51357 -40.76505 -39.85523 -38.35843 -36.15450 -35.07614 -33.71295 -32.64943 -31.22735 -30.72214 -28.71235 -26.44601 -25.89381 -25.06029 -23.63881 -23.09060 -22.86595 -21.76577 -20.17434 -19.55521 -18.99719 -18.65185 -18.44610 -17.86747 -17.13641 -16.85656 -16.63141 -16.57474 -16.15211 -15.99302 -15.89043 -15.41030 -15.06664 -14.88202 -14.60426 -14.43628 -14.30108 -14.11884 -14.00157 -13.79285 -13.36485 -13.14870 -13.03829 -12.97506 -12.78831 -12.68773 -12.42276 -12.17437 -12.13818 -11.86926 -11.64096 -11.55145 -11.10096 -10.94495 -10.79050 -10.19573 -9.83997 -9.31423 -9.27856 -8.01037 -5.34820 0.03811 0.09506 1.32260 1.38511 1.43523 1.46921 1.50487 2.30722 2.49736 2.51138 3.04844 3.18380 3.29361 3.40460 3.52799 3.65985 3.74967 3.81672 3.84852 3.89820 4.01286 4.13369 4.20778 4.28479 4.33504 4.37490 4.57377 4.67647 4.69565 4.75315 4.89653 4.95160 4.98796 5.03810 5.08987 5.21021 5.22531 5.32289 5.33120 5.42552 5.46822 5.55812 5.82594 5.96471 6.24174 6.38363 7.03856 7.09672 7.86413 8.05106 9.20401 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.002101 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.557965 B =13324.821492 C =14048.773442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.231 4.231 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.144 3.856 11 H 0.055 0.945 12 C -0.136 4.136 13 C -0.103 4.103 14 H 0.095 0.905 15 C 0.138 3.862 16 N -0.702 5.702 17 C 0.517 3.483 18 O -0.572 6.572 19 C 0.060 3.940 20 H 0.144 0.856 21 C -0.092 4.092 22 C -0.148 4.148 23 C -0.072 4.072 24 C -0.107 4.107 25 C -0.118 4.118 26 C 0.050 3.950 27 F -0.154 7.154 28 C 0.037 3.963 29 O -0.306 6.306 30 C -0.153 4.153 31 H 0.257 0.743 32 H 0.367 0.633 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.146 0.854 39 H 0.098 0.902 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.090 0.910 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.300 -4.461 19.627 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.169 1.169 7 C -0.362 4.362 8 H 0.074 0.926 9 N -0.374 5.374 10 C 0.035 3.965 11 H 0.074 0.926 12 C -0.175 4.175 13 C -0.122 4.122 14 H 0.113 0.887 15 C 0.015 3.985 16 N -0.355 5.355 17 C 0.302 3.698 18 O -0.451 6.451 19 C 0.001 3.999 20 H 0.161 0.839 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.136 4.136 26 C 0.030 3.970 27 F -0.133 7.133 28 C -0.009 4.009 29 O -0.220 6.220 30 C -0.193 4.193 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.256 0.744 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.185 0.815 41 H 0.195 0.805 42 H 0.184 0.816 43 H 0.109 0.891 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.780 -5.145 18.955 30.078 hybrid contribution 0.080 1.228 -0.457 1.312 sum 22.860 -3.918 18.498 29.667 Atomic orbital electron populations 1.69889 1.07258 1.26690 1.59700 1.25539 0.96125 1.01397 1.02735 0.85394 0.78855 0.79420 0.77976 1.20878 1.22487 1.16850 1.19051 0.82642 0.93388 1.41128 0.92641 1.42415 1.02188 1.03515 1.89325 1.21392 0.91493 0.87779 0.95876 0.92637 1.23372 0.95528 1.02924 0.95672 1.22579 0.92099 1.00071 0.97434 0.88723 1.21380 0.95257 0.99090 0.82777 1.45761 1.21891 1.48348 1.19501 1.20366 0.81351 0.80739 0.87302 1.90743 1.54743 1.36392 1.63191 1.23448 0.83485 1.00152 0.92852 0.83907 1.21871 0.96897 1.04883 0.89194 1.20876 0.91740 1.05747 0.96560 1.20881 1.01965 0.96372 0.89774 1.21437 0.90055 0.98854 1.02088 1.21303 1.00851 1.00505 0.90986 1.17529 0.76663 1.10383 0.92408 1.91456 1.38001 1.94664 1.89211 1.19937 0.95400 1.01841 0.83708 1.86956 1.39237 1.76582 1.19249 1.23738 0.96360 1.00182 0.99014 0.93386 0.79902 0.91441 0.87768 0.91390 0.91613 0.74387 0.83647 0.88333 0.81523 0.80498 0.81596 0.89130 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 43.21 27.74 68.60 1.90 45.11 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.24 -9.54 6.52 99.48 0.65 -8.89 16 7 C -0.23 -12.61 10.45 84.03 0.88 -11.73 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 9 N -0.73 -31.46 5.12 -320.02 -1.64 -33.10 16 10 C 0.14 4.85 4.57 45.61 0.21 5.06 16 11 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 12 C -0.14 -3.40 7.39 31.12 0.23 -3.17 16 13 C -0.10 -2.26 3.63 -10.26 -0.04 -2.30 16 14 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 15 C 0.14 2.79 5.50 86.38 0.47 3.27 16 16 N -0.70 -12.23 5.55 -463.05 -2.57 -14.80 16 17 C 0.52 11.81 7.13 87.65 0.63 12.44 16 18 O -0.57 -19.22 16.57 15.21 0.25 -18.97 16 19 C 0.06 1.07 4.05 30.43 0.12 1.19 16 20 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 21 C -0.09 -1.09 6.63 30.73 0.20 -0.89 16 22 C -0.15 -2.20 6.27 -19.53 -0.12 -2.32 16 23 C -0.07 -0.65 10.03 22.19 0.22 -0.43 16 24 C -0.11 -0.82 10.07 22.30 0.22 -0.60 16 25 C -0.12 -1.47 9.99 22.25 0.22 -1.25 16 26 C 0.05 1.04 7.32 22.54 0.16 1.21 16 27 F -0.15 -3.93 17.27 44.97 0.78 -3.16 16 28 C 0.04 0.82 7.02 22.70 0.16 0.98 16 29 O -0.31 -8.22 10.39 -77.56 -0.81 -9.03 16 30 C -0.15 -4.01 7.45 31.21 0.23 -3.77 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.37 14.89 5.76 -92.71 -0.53 14.36 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 2.20 8.10 -2.38 -0.02 2.18 16 35 H 0.07 1.47 7.88 -2.39 -0.02 1.45 16 36 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.42 4.85 8.47 -92.71 -0.79 4.06 16 38 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 1.27 7.92 -2.39 -0.02 1.25 16 40 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.09 2.09 7.92 -2.39 -0.02 2.07 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -80.87 373.85 2.16 -78.70 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.33 Total: 22.31 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.28 Total: -5.66 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.90 Total: -109.31 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.55 Total: -28.00 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.90 Total: 45.11 kcal Total: -80.87 2.16 -78.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086555551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.771 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds