Wall clock time and date at job start Tue Mar 31 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48495 * 109.47408 * 240.00207 * 3 2 1 5 5 H 1.48496 * 109.47156 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46871 * 119.99957 * 3 2 1 7 7 C 1.38809 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00312 * 179.97438 * 9 7 2 11 11 C 1.53777 * 113.61732 * 154.99990 * 10 9 7 12 12 C 1.53782 * 87.08004 * 89.11642 * 11 10 9 13 13 C 1.52998 * 113.61174 * 139.98076 * 12 11 10 14 14 N 1.46500 * 109.47290 * 176.52842 * 13 12 11 15 15 C 1.34774 * 120.00556 * 180.02562 * 14 13 12 16 16 O 1.21641 * 119.99584 * 0.02562 * 15 14 13 17 17 C 1.47190 * 120.00368 * 179.97438 * 15 14 13 18 18 C 1.35626 * 123.18785 * 359.96564 * 17 15 14 19 19 S 1.70263 * 110.84347 * 180.02562 * 18 17 15 20 20 C 1.75594 * 92.62544 * 359.97438 * 19 18 17 21 21 C 1.34004 * 110.60071 * 359.97438 * 20 19 18 22 22 C 1.52016 * 123.46257 * 180.02562 * 21 20 19 23 23 C 1.53039 * 108.76234 * 342.89434 * 22 21 20 24 24 C 1.53073 * 109.24880 * 50.59529 * 23 22 21 25 25 C 1.51612 * 125.04674 * 179.97438 * 20 19 18 26 26 C 1.53783 * 87.17188 * 25.39290 * 12 11 10 27 27 H 0.97001 * 119.99442 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99806 * 359.97438 * 9 7 2 29 29 H 1.09001 * 112.84962 * 23.80264 * 10 9 7 30 30 H 1.08997 * 113.61147 * 334.57005 * 11 10 9 31 31 H 1.09000 * 113.61471 * 203.66909 * 11 10 9 32 32 H 1.09000 * 113.61471 * 270.80143 * 12 11 10 33 33 H 1.09003 * 109.47298 * 56.52901 * 13 12 11 34 34 H 1.08996 * 109.47675 * 296.52702 * 13 12 11 35 35 H 0.97005 * 119.99445 * 0.02562 * 14 13 12 36 36 H 1.08006 * 124.57776 * 0.02562 * 18 17 15 37 37 H 1.09005 * 109.58941 * 102.67780 * 22 21 20 38 38 H 1.08998 * 109.59182 * 223.10770 * 22 21 20 39 39 H 1.09006 * 109.51478 * 170.54493 * 23 22 21 40 40 H 1.08997 * 109.51658 * 290.70610 * 23 22 21 41 41 H 1.09001 * 109.55401 * 169.78300 * 24 23 22 42 42 H 1.09004 * 109.50160 * 49.53676 * 24 23 22 43 43 H 1.08990 * 109.60037 * 283.12129 * 25 20 19 44 44 H 1.09002 * 109.59312 * 43.58630 * 25 20 19 45 45 H 1.09001 * 113.61368 * 89.15629 * 26 12 11 46 46 H 1.09000 * 113.60879 * 220.06106 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.2606 -4.8290 0.5939 12 6 0.7198 -5.0787 -0.8239 13 6 0.6188 -6.5610 -1.1890 14 7 0.0192 -6.6966 -2.5188 15 6 -0.1700 -7.9202 -3.0512 16 8 0.1566 -8.9120 -2.4273 17 6 -0.7730 -8.0565 -4.3870 18 6 -1.1621 -6.9960 -5.1376 19 16 -1.8168 -7.5121 -6.6221 20 6 -1.5652 -9.2065 -6.2363 21 6 -1.0061 -9.3364 -5.0254 22 6 -0.6606 -10.6787 -4.4012 23 6 -1.4208 -11.7783 -5.1464 24 6 -1.1914 -11.6192 -6.6515 25 6 -1.9269 -10.3684 -7.1406 26 6 1.9968 -4.4009 -1.3481 27 1 -0.4849 0.8401 0.0004 28 1 0.3557 -2.3880 0.0002 29 1 3.0659 -3.5640 0.4030 30 1 0.4948 -4.5195 1.3050 31 1 1.8878 -5.6370 0.9706 32 1 -0.1918 -4.5246 -1.0473 33 1 -0.0035 -7.0742 -0.4559 34 1 1.6150 -7.0031 -1.1930 35 1 -0.2417 -5.9057 -3.0161 36 1 -1.0693 -5.9635 -4.8344 37 1 0.4118 -10.8552 -4.4842 38 1 -0.9529 -10.6796 -3.3512 39 1 -1.0581 -12.7543 -4.8239 40 1 -2.4859 -11.6951 -4.9304 41 1 -1.5753 -12.4956 -7.1736 42 1 -0.1243 -11.5145 -6.8479 43 1 -3.0026 -10.5395 -7.1035 44 1 -1.6253 -10.1431 -8.1635 45 1 2.8256 -5.0917 -1.5032 46 1 1.8244 -3.7462 -2.2023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091356757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:31 Heat of formation + Delta-G solvation = 4.247065 kcal Electronic energy + Delta-G solvation = -25507.234304 eV Core-core repulsion = 21909.143519 eV Total energy + Delta-G solvation = -3598.090786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21079 -38.92859 -38.17486 -35.24139 -34.62032 -33.19632 -31.03624 -30.33257 -29.40611 -27.38284 -25.09122 -24.80135 -23.66279 -23.55417 -22.24269 -21.58695 -20.03814 -18.56155 -18.34012 -17.87309 -17.25954 -16.91217 -15.76480 -15.48556 -14.89780 -14.85813 -14.65202 -14.42560 -14.19449 -14.07581 -13.74752 -13.50550 -13.34971 -13.01407 -12.98214 -12.83951 -12.45284 -12.26386 -11.94122 -11.80464 -11.68770 -11.40303 -11.12930 -11.06078 -10.98724 -10.84686 -10.62632 -10.50547 -10.22714 -10.08787 -9.76285 -9.71122 -9.47167 -9.04762 -8.90600 -8.83797 -8.50915 -7.02721 -5.83122 -3.12241 0.55817 1.27351 1.70145 1.78629 3.19704 3.30338 3.40666 3.45244 3.46088 4.24666 4.50020 4.53584 4.58133 4.66782 4.82668 4.92868 4.99599 5.04769 5.11387 5.22482 5.22981 5.28992 5.30878 5.43024 5.48442 5.58601 5.61577 5.63132 5.69642 5.77923 5.85407 5.86963 5.94517 6.00024 6.04785 6.09487 6.19828 6.35306 6.35962 6.42433 6.57440 6.72185 6.88091 7.02101 7.51451 7.66255 8.21097 8.36102 9.46673 10.04157 10.38386 11.39200 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002123 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.206568 B =13183.999709 C =14219.289305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.132 3.868 14 N -0.719 5.719 15 C 0.573 3.427 16 O -0.539 6.539 17 C -0.146 4.146 18 C -0.213 4.213 19 S 0.182 5.818 20 C -0.212 4.212 21 C -0.051 4.051 22 C -0.053 4.053 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.043 4.043 26 C -0.169 4.169 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.171 0.829 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -22.653 -14.698 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.010 3.990 14 N -0.370 5.370 15 C 0.358 3.642 16 O -0.418 6.418 17 C -0.165 4.165 18 C -0.351 4.351 19 S 0.452 5.548 20 C -0.328 4.328 21 C -0.062 4.062 22 C -0.092 4.092 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.082 4.082 26 C -0.210 4.210 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.189 0.811 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.065 -22.343 -15.471 27.645 hybrid contribution 0.560 0.950 0.984 1.478 sum -4.504 -21.393 -14.487 26.226 Atomic orbital electron populations 1.69652 1.05133 1.25907 1.57401 1.24768 0.95553 0.97803 1.02768 0.86238 0.78515 0.83349 0.77905 1.21221 1.21679 1.21182 1.19248 0.91098 0.83978 1.43075 0.91038 1.42164 1.05669 0.99435 1.87145 1.21090 0.95115 0.85585 0.92695 1.23435 1.00490 0.99696 0.95069 1.22715 0.99558 0.92929 0.98693 1.21490 0.98040 0.97059 0.82458 1.45941 1.63343 1.07764 1.19902 1.17624 0.78343 0.83459 0.84748 1.90752 1.51485 1.37168 1.62365 1.20159 1.07073 0.92479 0.96745 1.25491 1.05573 1.03482 1.00575 1.82919 1.58820 0.97970 1.15112 1.24696 1.10114 0.98030 1.00003 1.20391 0.98592 0.94540 0.92702 1.20523 1.00458 0.88263 0.99948 1.21617 1.00843 0.98724 0.94819 1.21575 1.00928 0.96688 0.96352 1.20296 1.00661 0.90579 0.96690 1.23918 0.95698 0.99619 1.01732 0.93387 0.78127 0.91938 0.91298 0.90419 0.88962 0.91709 0.91451 0.76552 0.81124 0.90335 0.89084 0.91215 0.91708 0.91149 0.91423 0.90305 0.90528 0.91391 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.24 5.31 -52.55 -0.28 -17.52 16 10 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 11 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 12 C -0.12 -1.79 3.62 -89.81 -0.33 -2.12 16 13 C 0.13 1.80 5.50 -4.04 -0.02 1.78 16 14 N -0.72 -9.25 5.52 -61.46 -0.34 -9.59 16 15 C 0.57 8.09 7.79 -12.63 -0.10 7.99 16 16 O -0.54 -8.97 14.61 5.24 0.08 -8.89 16 17 C -0.15 -1.79 5.97 -104.56 -0.62 -2.41 16 18 C -0.21 -2.16 10.35 29.80 0.31 -1.85 16 19 S 0.18 1.56 22.99 -107.50 -2.47 -0.91 16 20 C -0.21 -2.00 6.32 -35.35 -0.22 -2.22 16 21 C -0.05 -0.58 5.95 -102.82 -0.61 -1.19 16 22 C -0.05 -0.56 5.07 -27.21 -0.14 -0.69 16 23 C -0.12 -0.94 5.90 -26.67 -0.16 -1.10 16 24 C -0.12 -0.76 5.93 -26.63 -0.16 -0.91 16 25 C -0.04 -0.29 6.26 -27.37 -0.17 -0.47 16 26 C -0.17 -2.79 7.44 -25.83 -0.19 -2.98 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 28 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 35 H 0.40 4.51 6.94 -40.82 -0.28 4.23 16 36 H 0.17 1.44 6.97 -52.48 -0.37 1.07 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.32 382.25 -11.90 -43.22 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.19 Total: 10.83 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.16 Total: -13.01 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.11 Total: -54.05 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.32 -11.90 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091356757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.462 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds