Wall clock time and date at job start Tue Mar 31 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48495 * 109.47408 * 240.00207 * 3 2 1 5 5 H 1.48496 * 109.47156 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46871 * 119.99957 * 3 2 1 7 7 C 1.38809 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00312 * 179.97438 * 9 7 2 11 11 C 1.53777 * 113.61732 * 154.99990 * 10 9 7 12 12 C 1.53782 * 87.08004 * 89.11642 * 11 10 9 13 13 C 1.52998 * 113.61174 * 139.98076 * 12 11 10 14 14 N 1.46500 * 109.47290 * 176.52842 * 13 12 11 15 15 C 1.34774 * 120.00556 * 180.02562 * 14 13 12 16 16 O 1.21641 * 119.99584 * 0.02562 * 15 14 13 17 17 C 1.47190 * 120.00368 * 179.97438 * 15 14 13 18 18 C 1.35626 * 123.18785 * 359.96564 * 17 15 14 19 19 S 1.70263 * 110.84347 * 180.02562 * 18 17 15 20 20 C 1.75594 * 92.62544 * 359.97438 * 19 18 17 21 21 C 1.34004 * 110.60071 * 359.97438 * 20 19 18 22 22 C 1.52016 * 123.46257 * 180.02562 * 21 20 19 23 23 C 1.53039 * 108.76234 * 342.89434 * 22 21 20 24 24 C 1.53073 * 109.24880 * 50.59529 * 23 22 21 25 25 C 1.51612 * 125.04674 * 179.97438 * 20 19 18 26 26 C 1.53783 * 87.17188 * 25.39290 * 12 11 10 27 27 H 0.97001 * 119.99442 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99806 * 359.97438 * 9 7 2 29 29 H 1.09001 * 112.84962 * 23.80264 * 10 9 7 30 30 H 1.08997 * 113.61147 * 334.57005 * 11 10 9 31 31 H 1.09000 * 113.61471 * 203.66909 * 11 10 9 32 32 H 1.09000 * 113.61471 * 270.80143 * 12 11 10 33 33 H 1.09003 * 109.47298 * 56.52901 * 13 12 11 34 34 H 1.08996 * 109.47675 * 296.52702 * 13 12 11 35 35 H 0.97005 * 119.99445 * 0.02562 * 14 13 12 36 36 H 1.08006 * 124.57776 * 0.02562 * 18 17 15 37 37 H 1.09005 * 109.58941 * 102.67780 * 22 21 20 38 38 H 1.08998 * 109.59182 * 223.10770 * 22 21 20 39 39 H 1.09006 * 109.51478 * 170.54493 * 23 22 21 40 40 H 1.08997 * 109.51658 * 290.70610 * 23 22 21 41 41 H 1.09001 * 109.55401 * 169.78300 * 24 23 22 42 42 H 1.09004 * 109.50160 * 49.53676 * 24 23 22 43 43 H 1.08990 * 109.60037 * 283.12129 * 25 20 19 44 44 H 1.09002 * 109.59312 * 43.58630 * 25 20 19 45 45 H 1.09001 * 113.61368 * 89.15629 * 26 12 11 46 46 H 1.09000 * 113.60879 * 220.06106 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.2606 -4.8290 0.5939 12 6 0.7198 -5.0787 -0.8239 13 6 0.6188 -6.5610 -1.1890 14 7 0.0192 -6.6966 -2.5188 15 6 -0.1700 -7.9202 -3.0512 16 8 0.1566 -8.9120 -2.4273 17 6 -0.7730 -8.0565 -4.3870 18 6 -1.1621 -6.9960 -5.1376 19 16 -1.8168 -7.5121 -6.6221 20 6 -1.5652 -9.2065 -6.2363 21 6 -1.0061 -9.3364 -5.0254 22 6 -0.6606 -10.6787 -4.4012 23 6 -1.4208 -11.7783 -5.1464 24 6 -1.1914 -11.6192 -6.6515 25 6 -1.9269 -10.3684 -7.1406 26 6 1.9968 -4.4009 -1.3481 27 1 -0.4849 0.8401 0.0004 28 1 0.3557 -2.3880 0.0002 29 1 3.0659 -3.5640 0.4030 30 1 0.4948 -4.5195 1.3050 31 1 1.8878 -5.6370 0.9706 32 1 -0.1918 -4.5246 -1.0473 33 1 -0.0035 -7.0742 -0.4559 34 1 1.6150 -7.0031 -1.1930 35 1 -0.2417 -5.9057 -3.0161 36 1 -1.0693 -5.9635 -4.8344 37 1 0.4118 -10.8552 -4.4842 38 1 -0.9529 -10.6796 -3.3512 39 1 -1.0581 -12.7543 -4.8239 40 1 -2.4859 -11.6951 -4.9304 41 1 -1.5753 -12.4956 -7.1736 42 1 -0.1243 -11.5145 -6.8479 43 1 -3.0026 -10.5395 -7.1035 44 1 -1.6253 -10.1431 -8.1635 45 1 2.8256 -5.0917 -1.5032 46 1 1.8244 -3.7462 -2.2023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091356757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:30 Heat of formation + Delta-G solvation = -13.702535 kcal Electronic energy + Delta-G solvation = -25508.012657 eV Core-core repulsion = 21909.143519 eV Total energy + Delta-G solvation = -3598.869139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21761 -40.12266 -39.18472 -36.12569 -35.89116 -34.90983 -32.12165 -31.69497 -30.31813 -28.62067 -26.45989 -26.03601 -25.28005 -24.24615 -23.27894 -22.67794 -21.02983 -19.82113 -19.36903 -19.17706 -18.59563 -17.90253 -16.89348 -16.64060 -16.51302 -15.83020 -15.76638 -15.52711 -15.29431 -15.02461 -14.79881 -14.70635 -14.57166 -14.24158 -13.98751 -13.75386 -13.57547 -13.30023 -13.13229 -12.93659 -12.92390 -12.63639 -12.51208 -12.37954 -12.21012 -12.08746 -11.73733 -11.66426 -11.52336 -11.48019 -11.25954 -11.02548 -10.88559 -10.71513 -10.14973 -9.59491 -9.26696 -9.01045 -7.96097 -5.24482 -0.25260 0.55471 0.92010 0.93647 1.47402 1.49840 1.55939 2.16628 2.29214 2.55115 3.36186 3.56027 3.69349 3.76163 3.77403 3.86808 4.01391 4.02949 4.09482 4.13620 4.26284 4.30567 4.34267 4.38020 4.57352 4.62975 4.68250 4.70969 4.74555 4.89613 4.91214 4.97034 4.99307 5.00184 5.09401 5.11012 5.20274 5.26197 5.33065 5.34468 5.44515 5.46729 5.52885 5.59223 5.64101 6.27343 6.48340 7.15671 7.32436 8.09381 8.31911 9.26855 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002123 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.206568 B =13183.999709 C =14219.289305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.103 4.103 13 C 0.142 3.858 14 N -0.714 5.714 15 C 0.570 3.430 16 O -0.572 6.572 17 C -0.174 4.174 18 C -0.218 4.218 19 S 0.232 5.768 20 C -0.211 4.211 21 C -0.080 4.080 22 C -0.051 4.051 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.046 4.046 26 C -0.153 4.153 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.184 0.816 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -23.611 -16.521 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.035 3.965 11 C -0.173 4.173 12 C -0.121 4.121 13 C 0.019 3.981 14 N -0.365 5.365 15 C 0.357 3.643 16 O -0.453 6.453 17 C -0.193 4.193 18 C -0.356 4.356 19 S 0.503 5.497 20 C -0.328 4.328 21 C -0.090 4.090 22 C -0.090 4.090 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.085 4.085 26 C -0.194 4.194 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.201 0.799 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.899 -23.329 -17.307 29.459 hybrid contribution 0.536 1.201 1.511 2.003 sum -4.363 -22.128 -15.797 27.536 Atomic orbital electron populations 1.69805 1.06535 1.26136 1.59424 1.25556 0.96403 1.01061 1.03740 0.85218 0.77192 0.79218 0.78171 1.20413 1.22249 1.20465 1.19633 0.91520 0.85190 1.41188 0.90588 1.42292 1.05310 1.00533 1.87616 1.21411 0.95089 0.84911 0.95132 1.23340 0.99975 0.98682 0.95294 1.22494 0.98355 0.93529 0.97759 1.21318 0.98208 0.95687 0.82905 1.45878 1.63048 1.07947 1.19648 1.17967 0.77858 0.83103 0.85386 1.90728 1.53052 1.38140 1.63414 1.20133 1.09027 0.93715 0.96392 1.25758 1.04742 1.03784 1.01307 1.82750 1.57023 0.96821 1.13148 1.25128 1.08487 0.99570 0.99628 1.20520 1.00274 0.94410 0.93782 1.20438 1.00077 0.89499 0.98980 1.21600 1.00360 0.98006 0.95621 1.21578 1.00755 0.97560 0.95329 1.20474 1.01543 0.89558 0.96883 1.23739 0.97252 0.99195 0.99197 0.94018 0.79362 0.92146 0.92305 0.87605 0.90096 0.91796 0.91291 0.75638 0.79862 0.91582 0.91655 0.90250 0.91644 0.88821 0.91978 0.88925 0.88796 0.89149 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.46 13.06 21.65 0.28 -58.18 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.48 5.31 -320.18 -1.70 -37.18 16 10 C 0.14 5.51 4.57 45.58 0.21 5.72 16 11 C -0.13 -4.10 7.39 31.12 0.23 -3.87 16 12 C -0.10 -2.97 3.62 -10.27 -0.04 -3.01 16 13 C 0.14 3.74 5.50 86.38 0.47 4.21 16 14 N -0.71 -18.13 5.52 -466.60 -2.58 -20.71 16 15 C 0.57 16.29 7.79 86.60 0.67 16.97 16 16 O -0.57 -19.63 14.61 -4.16 -0.06 -19.69 16 17 C -0.17 -4.24 5.97 -19.82 -0.12 -4.36 16 18 C -0.22 -4.16 10.35 67.21 0.70 -3.46 16 19 S 0.23 3.49 22.99 -56.49 -1.30 2.19 16 20 C -0.21 -3.63 6.32 25.01 0.16 -3.47 16 21 C -0.08 -1.79 5.95 -18.70 -0.11 -1.90 16 22 C -0.05 -1.10 5.07 30.28 0.15 -0.95 16 23 C -0.12 -1.71 5.90 30.63 0.18 -1.53 16 24 C -0.11 -1.23 5.93 30.66 0.18 -1.04 16 25 C -0.05 -0.50 6.26 30.18 0.19 -0.31 16 26 C -0.15 -4.90 7.44 31.18 0.23 -4.67 16 27 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.37 19.75 7.90 -92.71 -0.73 19.02 16 29 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.83 7.87 -2.39 -0.02 1.81 16 35 H 0.41 8.96 6.94 -92.70 -0.64 8.32 16 36 H 0.18 2.85 6.97 -2.91 -0.02 2.83 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.51 16 38 H 0.06 1.71 6.93 -2.39 -0.02 1.70 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.48 382.25 0.72 -67.77 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.37 Total: 36.13 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.42 Total: -17.99 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.99 Total: -116.07 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.30 Total: 2.19 kcal Total: -68.48 0.72 -67.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091356757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.063 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds