Wall clock time and date at job start Tue Mar 31 2020 18:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48494 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47091 * 300.00374 * 3 2 1 6 6 H 1.48496 * 109.46659 * 60.00115 * 3 2 1 7 7 C 1.37887 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47281 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47577 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47147 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99580 * 179.97438 * 12 11 10 14 14 O 1.21353 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.49450 * 119.99998 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99627 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00555 * 180.02562 * 15 13 12 18 18 C 1.46491 * 120.00356 * 180.02562 * 17 15 13 19 19 H 1.08996 * 110.34819 * 35.66862 * 18 17 15 20 20 C 1.54346 * 110.30729 * 157.79995 * 18 17 15 21 21 C 1.54343 * 102.39605 * 92.56799 * 20 18 17 22 22 C 1.51383 * 105.23223 * 26.14487 * 21 20 18 23 23 C 1.38515 * 130.35154 * 162.36125 * 22 21 20 24 24 C 1.38064 * 120.24936 * 180.33586 * 23 22 21 25 25 C 1.38484 * 119.90565 * 0.28274 * 24 23 22 26 26 F 1.35104 * 120.05794 * 180.02562 * 25 24 23 27 27 C 1.38319 * 119.88178 * 0.02562 * 25 24 23 28 28 C 1.38230 * 109.75134 * 343.18676 * 22 21 20 29 29 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46961 * 60.00059 * 9 7 2 31 31 H 1.08993 * 109.47524 * 300.00387 * 9 7 2 32 32 H 1.09005 * 109.46855 * 60.00264 * 10 9 7 33 33 H 1.09003 * 109.47347 * 300.00681 * 10 9 7 34 34 H 1.08998 * 109.47053 * 60.00558 * 11 10 9 35 35 H 1.09003 * 109.47298 * 300.00662 * 11 10 9 36 36 H 0.96997 * 120.00049 * 0.02562 * 12 11 10 37 37 H 0.97008 * 119.99371 * 0.02562 * 17 15 13 38 38 H 1.09000 * 110.82085 * 210.80189 * 20 18 17 39 39 H 1.09010 * 110.81680 * 334.15077 * 20 18 17 40 40 H 1.08998 * 110.30035 * 145.28436 * 21 20 18 41 41 H 1.08996 * 110.30664 * 267.33870 * 21 20 18 42 42 H 1.08002 * 119.87951 * 0.61793 * 23 22 21 43 43 H 1.08002 * 120.04868 * 180.30522 * 24 23 22 44 44 H 1.08002 * 119.90649 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 7 2.4323 -6.1007 -0.0031 13 6 1.9830 -7.3713 -0.0032 14 8 0.7899 -7.5931 -0.0033 15 6 2.9541 -8.5073 -0.0044 16 8 4.1472 -8.2855 -0.0048 17 7 2.5049 -9.7780 -0.0050 18 6 3.4568 -10.8915 -0.0057 19 1 4.3342 -10.6404 0.5903 20 6 2.7862 -12.1698 0.5407 21 6 2.2674 -12.8473 -0.7454 22 6 3.1772 -12.3535 -1.8499 23 6 3.3974 -12.8552 -3.1221 24 6 4.2927 -12.2336 -3.9696 25 6 4.9778 -11.1076 -3.5448 26 9 5.8541 -10.4966 -4.3718 27 6 4.7632 -10.6096 -2.2724 28 6 3.8648 -11.2329 -1.4228 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.8725 -3.6048 0.8878 33 1 2.8713 -3.6040 -0.8922 34 1 0.8533 -5.0443 -0.8923 35 1 0.8539 -5.0456 0.8877 36 1 3.3859 -5.9234 -0.0027 37 1 1.5511 -9.9552 -0.0051 38 1 3.5148 -12.8039 1.0459 39 1 1.9628 -11.9197 1.2097 40 1 2.3326 -13.9315 -0.6544 41 1 1.2387 -12.5461 -0.9430 42 1 2.8634 -13.7334 -3.4540 43 1 4.4582 -12.6248 -4.9626 44 1 5.2976 -9.7317 -1.9405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117306760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:25 Heat of formation + Delta-G solvation = -105.596140 kcal Electronic energy + Delta-G solvation = -27264.874897 eV Core-core repulsion = 23095.807777 eV Total energy + Delta-G solvation = -4169.067120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.16144 -41.20368 -40.11714 -38.44204 -36.51671 -35.64200 -33.74868 -33.24061 -31.60021 -31.26189 -29.20761 -27.78193 -26.93995 -24.58945 -23.45042 -22.71834 -21.57082 -21.20370 -20.79683 -20.22821 -18.48075 -17.68163 -17.04944 -16.86589 -16.39286 -16.14012 -15.95950 -15.85241 -15.66194 -15.07986 -14.90629 -14.76373 -14.45859 -14.39770 -14.00694 -13.79476 -13.66400 -13.16250 -12.86430 -12.47689 -12.32966 -12.11787 -11.91062 -11.81753 -11.81277 -11.74197 -11.53798 -11.41566 -10.93717 -10.77680 -10.58823 -9.91915 -9.87092 -9.64792 -9.46388 -9.34426 -9.12966 -9.00897 -8.87141 -8.39139 -6.03688 -4.06563 0.66325 0.79165 1.36302 2.28848 3.12059 3.17287 3.29720 3.37357 3.41311 3.61346 3.67058 3.91078 4.05961 4.38582 4.43505 4.47208 4.49830 4.56222 4.67859 4.75914 5.10307 5.19064 5.22902 5.29532 5.32430 5.41808 5.47133 5.57363 5.66425 5.67311 5.74948 5.80491 5.92148 6.06239 6.07729 6.24037 6.48118 6.52503 6.66341 6.85120 6.93847 7.35469 7.60886 7.66152 7.72143 7.94719 8.01023 8.36017 9.00180 9.57883 11.07634 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.001981 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.182689 B =14130.721961 C =15091.408829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.690 5.690 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.511 3.489 16 O -0.516 6.516 17 N -0.694 5.694 18 C 0.182 3.818 19 H 0.105 0.895 20 C -0.126 4.126 21 C -0.084 4.084 22 C -0.096 4.096 23 C -0.084 4.084 24 C -0.144 4.144 25 C 0.094 3.906 26 F -0.137 7.137 27 C -0.119 4.119 28 C -0.088 4.088 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 -31.805 -2.266 32.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.342 5.342 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.292 3.708 16 O -0.391 6.391 17 N -0.348 5.348 18 C 0.078 3.922 19 H 0.123 0.877 20 C -0.164 4.164 21 C -0.121 4.121 22 C -0.097 4.097 23 C -0.102 4.102 24 C -0.163 4.163 25 C 0.075 3.925 26 F -0.116 7.116 27 C -0.138 4.138 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.467 -31.621 -2.276 32.355 hybrid contribution 0.638 1.167 -0.360 1.378 sum 7.105 -30.453 -2.636 31.382 Atomic orbital electron populations 1.69971 1.06059 1.26615 1.50655 1.25034 0.94872 0.99355 0.95247 0.86514 0.80089 0.83679 0.77596 1.19722 1.20994 1.20993 1.21237 0.93092 0.90859 1.50824 0.92511 1.19036 0.93802 0.90804 0.97718 1.21929 0.99881 0.92934 1.01327 1.21855 0.91727 0.84706 1.02550 1.46074 1.12256 1.04976 1.70891 1.19967 0.88429 0.84493 0.79134 1.90762 1.15957 1.84683 1.48876 1.20417 0.88880 0.84416 0.77055 1.90753 1.16202 1.84710 1.47440 1.45783 1.11192 1.04275 1.73528 1.20402 0.93213 0.86360 0.92223 0.87676 1.22613 1.01547 0.94782 0.97427 1.21104 0.98523 1.01164 0.91302 1.20657 0.97709 0.96320 0.95014 1.20438 0.97577 0.99900 0.92285 1.21096 0.98238 0.95699 1.01259 1.17545 0.92146 0.93981 0.88867 1.91523 1.66680 1.82312 1.71074 1.20757 0.99664 1.01305 0.92087 1.20576 0.96198 0.95722 0.96485 0.92968 0.96201 0.96181 0.92409 0.92428 0.91080 0.91047 0.75295 0.74854 0.88810 0.88992 0.89763 0.89542 0.84986 0.84432 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 12 N -0.69 -10.22 5.55 -60.73 -0.34 -10.55 16 13 C 0.50 7.29 7.89 -11.59 -0.09 7.20 16 14 O -0.53 -8.70 16.48 5.49 0.09 -8.61 16 15 C 0.51 6.40 7.88 -11.59 -0.09 6.31 16 16 O -0.52 -7.25 15.99 5.49 0.09 -7.16 16 17 N -0.69 -6.52 5.10 -54.36 -0.28 -6.80 16 18 C 0.18 1.41 3.17 -68.05 -0.22 1.20 16 19 H 0.11 0.88 7.65 -51.93 -0.40 0.49 16 20 C -0.13 -0.56 6.66 -25.32 -0.17 -0.73 16 21 C -0.08 -0.38 6.77 -26.84 -0.18 -0.56 16 22 C -0.10 -0.69 6.14 -104.19 -0.64 -1.33 16 23 C -0.08 -0.57 10.04 -39.54 -0.40 -0.96 16 24 C -0.14 -1.15 10.03 -39.55 -0.40 -1.54 16 25 C 0.09 0.96 7.30 -39.46 -0.29 0.67 16 26 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 27 C -0.12 -1.26 10.02 -39.47 -0.40 -1.65 16 28 C -0.09 -0.79 5.75 -104.21 -0.60 -1.39 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.41 5.56 7.94 -40.82 -0.32 5.24 16 37 H 0.41 3.43 8.06 -40.82 -0.33 3.10 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.32 8.05 -51.92 -0.42 -0.10 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 1.61 7.87 -52.49 -0.41 1.19 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -32.80 381.67 -9.18 -41.99 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.07 Total: 2.62 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -4.18 Total: -6.26 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.12 Total: -43.28 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.18 Total: -15.77 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.80 -9.18 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.610 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds