Wall clock time and date at job start Tue Mar 31 2020 18:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48494 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47091 * 300.00374 * 3 2 1 6 6 H 1.48496 * 109.46659 * 60.00115 * 3 2 1 7 7 C 1.37887 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47281 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47577 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47147 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99580 * 179.97438 * 12 11 10 14 14 O 1.21353 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.49450 * 119.99998 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99627 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00555 * 180.02562 * 15 13 12 18 18 C 1.46491 * 120.00356 * 180.02562 * 17 15 13 19 19 H 1.08996 * 110.34819 * 35.66862 * 18 17 15 20 20 C 1.54346 * 110.30729 * 157.79995 * 18 17 15 21 21 C 1.54343 * 102.39605 * 92.56799 * 20 18 17 22 22 C 1.51383 * 105.23223 * 26.14487 * 21 20 18 23 23 C 1.38515 * 130.35154 * 162.36125 * 22 21 20 24 24 C 1.38064 * 120.24936 * 180.33586 * 23 22 21 25 25 C 1.38484 * 119.90565 * 0.28274 * 24 23 22 26 26 F 1.35104 * 120.05794 * 180.02562 * 25 24 23 27 27 C 1.38319 * 119.88178 * 0.02562 * 25 24 23 28 28 C 1.38230 * 109.75134 * 343.18676 * 22 21 20 29 29 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46961 * 60.00059 * 9 7 2 31 31 H 1.08993 * 109.47524 * 300.00387 * 9 7 2 32 32 H 1.09005 * 109.46855 * 60.00264 * 10 9 7 33 33 H 1.09003 * 109.47347 * 300.00681 * 10 9 7 34 34 H 1.08998 * 109.47053 * 60.00558 * 11 10 9 35 35 H 1.09003 * 109.47298 * 300.00662 * 11 10 9 36 36 H 0.96997 * 120.00049 * 0.02562 * 12 11 10 37 37 H 0.97008 * 119.99371 * 0.02562 * 17 15 13 38 38 H 1.09000 * 110.82085 * 210.80189 * 20 18 17 39 39 H 1.09010 * 110.81680 * 334.15077 * 20 18 17 40 40 H 1.08998 * 110.30035 * 145.28436 * 21 20 18 41 41 H 1.08996 * 110.30664 * 267.33870 * 21 20 18 42 42 H 1.08002 * 119.87951 * 0.61793 * 23 22 21 43 43 H 1.08002 * 120.04868 * 180.30522 * 24 23 22 44 44 H 1.08002 * 119.90649 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 7 2.4323 -6.1007 -0.0031 13 6 1.9830 -7.3713 -0.0032 14 8 0.7899 -7.5931 -0.0033 15 6 2.9541 -8.5073 -0.0044 16 8 4.1472 -8.2855 -0.0048 17 7 2.5049 -9.7780 -0.0050 18 6 3.4568 -10.8915 -0.0057 19 1 4.3342 -10.6404 0.5903 20 6 2.7862 -12.1698 0.5407 21 6 2.2674 -12.8473 -0.7454 22 6 3.1772 -12.3535 -1.8499 23 6 3.3974 -12.8552 -3.1221 24 6 4.2927 -12.2336 -3.9696 25 6 4.9778 -11.1076 -3.5448 26 9 5.8541 -10.4966 -4.3718 27 6 4.7632 -10.6096 -2.2724 28 6 3.8648 -11.2329 -1.4228 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.8725 -3.6048 0.8878 33 1 2.8713 -3.6040 -0.8922 34 1 0.8533 -5.0443 -0.8923 35 1 0.8539 -5.0456 0.8877 36 1 3.3859 -5.9234 -0.0027 37 1 1.5511 -9.9552 -0.0051 38 1 3.5148 -12.8039 1.0459 39 1 1.9628 -11.9197 1.2097 40 1 2.3326 -13.9315 -0.6544 41 1 1.2387 -12.5461 -0.9430 42 1 2.8634 -13.7334 -3.4540 43 1 4.4582 -12.6248 -4.9626 44 1 5.2976 -9.7317 -1.9405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117306760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:24 Heat of formation + Delta-G solvation = -126.846095 kcal Electronic energy + Delta-G solvation = -27265.796365 eV Core-core repulsion = 23095.807777 eV Total energy + Delta-G solvation = -4169.988588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96411 -42.04454 -41.00940 -39.51221 -37.35977 -36.95751 -35.30499 -34.32643 -33.05608 -32.24682 -29.77965 -29.08840 -28.03974 -25.99260 -24.22451 -24.02008 -22.39136 -22.19372 -21.83699 -21.38980 -19.58850 -18.60274 -18.37316 -17.95614 -17.55883 -17.20605 -16.95703 -16.64393 -16.54324 -16.39385 -16.14706 -16.10120 -15.33192 -15.26228 -14.96830 -14.75724 -14.53542 -14.29279 -14.02812 -13.78942 -13.52736 -13.39547 -13.02066 -12.92106 -12.79557 -12.60432 -12.57092 -12.38771 -12.19058 -12.09717 -11.95850 -11.72317 -11.57815 -11.23451 -10.78244 -10.56594 -10.46144 -10.31485 -10.05918 -9.50243 -8.20809 -6.31528 0.01811 0.13490 0.27707 1.28140 1.40711 1.41369 1.54332 2.05950 2.39280 2.43641 2.71703 3.02549 3.13123 3.35898 3.41026 3.49483 3.91541 3.94914 4.03275 4.06148 4.16116 4.16733 4.27065 4.50579 4.56142 4.65118 4.73993 4.84336 4.89632 4.89984 4.97916 5.05121 5.10310 5.12987 5.17630 5.20301 5.20843 5.30544 5.47612 5.50386 5.69227 5.83243 5.84628 5.85980 6.21650 6.29368 6.66642 6.85432 6.87057 7.37793 8.91309 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.001981 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.182689 B =14130.721961 C =15091.408829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.501 3.499 14 O -0.546 6.546 15 C 0.515 3.485 16 O -0.536 6.536 17 N -0.677 5.677 18 C 0.177 3.823 19 H 0.095 0.905 20 C -0.116 4.116 21 C -0.081 4.081 22 C -0.090 4.090 23 C -0.081 4.081 24 C -0.142 4.142 25 C 0.064 3.936 26 F -0.153 7.153 27 C -0.140 4.140 28 C -0.106 4.106 29 H 0.264 0.736 30 H -0.004 1.004 31 H -0.002 1.002 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.419 0.581 37 H 0.422 0.578 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.700 -34.062 -1.958 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.281 3.719 14 O -0.424 6.424 15 C 0.295 3.705 16 O -0.412 6.412 17 N -0.330 5.330 18 C 0.073 3.927 19 H 0.113 0.887 20 C -0.154 4.154 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.098 4.098 24 C -0.161 4.161 25 C 0.045 3.955 26 F -0.132 7.132 27 C -0.160 4.160 28 C -0.107 4.107 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.256 0.744 37 H 0.260 0.740 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.184 0.816 43 H 0.174 0.826 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.590 -33.919 -1.966 34.610 hybrid contribution 0.567 1.785 -0.466 1.930 sum 7.157 -32.134 -2.433 33.012 Atomic orbital electron populations 1.70098 1.07775 1.27741 1.51682 1.25985 0.95776 1.03409 0.94816 0.85390 0.79102 0.78805 0.77695 1.18535 1.20535 1.20434 1.21699 0.93674 0.92139 1.50422 0.91864 1.18933 0.94332 0.92551 0.95463 1.21641 0.98645 0.91976 1.02145 1.21480 0.91562 0.84478 1.02033 1.45897 1.12247 1.04740 1.71044 1.20338 0.88553 0.84780 0.78184 1.90748 1.16920 1.85018 1.49697 1.20016 0.88022 0.84871 0.77553 1.90757 1.16641 1.84977 1.48865 1.45787 1.11998 1.03579 1.71653 1.20671 0.92998 0.87103 0.91897 0.88696 1.22678 1.02161 0.92763 0.97782 1.21211 0.98134 1.02632 0.89754 1.21085 0.97053 0.95164 0.95770 1.20853 0.96768 1.00421 0.91777 1.21398 0.97692 0.94626 1.02383 1.17856 0.93249 0.95406 0.88952 1.91473 1.67410 1.82830 1.71470 1.20746 1.00856 1.01361 0.93008 1.20738 0.96470 0.96641 0.96865 0.92761 0.98571 0.98385 0.91408 0.91683 0.91832 0.91492 0.74427 0.73979 0.87086 0.87490 0.87192 0.88512 0.81611 0.82554 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.11 -4.12 5.27 30.59 0.16 -3.96 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 N -0.69 -20.24 5.55 -464.40 -2.58 -22.81 16 13 C 0.50 14.49 7.89 87.27 0.69 15.18 16 14 O -0.55 -17.86 16.48 -3.26 -0.05 -17.91 16 15 C 0.52 12.78 7.88 87.27 0.69 13.47 16 16 O -0.54 -15.27 15.99 -3.26 -0.05 -15.32 16 17 N -0.68 -12.00 5.10 -444.24 -2.26 -14.26 16 18 C 0.18 2.52 3.17 44.92 0.14 2.66 16 19 H 0.10 1.56 7.65 -2.39 -0.02 1.54 16 20 C -0.12 -0.65 6.66 31.51 0.21 -0.44 16 21 C -0.08 -0.40 6.77 30.52 0.21 -0.19 16 22 C -0.09 -1.06 6.14 -19.58 -0.12 -1.18 16 23 C -0.08 -0.86 10.04 22.29 0.22 -0.63 16 24 C -0.14 -2.09 10.03 22.29 0.22 -1.86 16 25 C 0.06 1.37 7.30 22.35 0.16 1.53 16 26 F -0.15 -3.75 17.27 44.97 0.78 -2.97 16 27 C -0.14 -3.12 10.02 22.34 0.22 -2.89 16 28 C -0.11 -1.81 5.75 -19.60 -0.11 -1.93 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.42 11.19 7.94 -92.71 -0.74 10.46 16 37 H 0.42 6.25 8.06 -92.70 -0.75 5.50 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.11 0.34 8.05 -2.38 -0.02 0.32 16 40 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.12 3.00 7.87 -2.91 -0.02 2.98 16 Total: -1.00 -72.72 381.67 1.73 -70.99 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.44 Total: 16.18 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.03 Total: -3.73 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -4.56 Total: -93.42 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.11 Total: -33.23 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.72 1.73 -70.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.859 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds