Wall clock time and date at job start Tue Mar 31 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 108.57727 * 2 1 4 4 O 1.42100 * 108.57802 * 131.02381 * 2 1 3 5 5 C 1.81402 * 101.92393 * 245.50745 * 2 1 3 6 6 C 1.52995 * 109.47223 * 179.97438 * 5 2 1 7 7 H 1.09001 * 109.51006 * 60.00451 * 6 5 2 8 8 C 1.53290 * 109.51249 * 180.10309 * 6 5 2 9 9 N 1.47157 * 108.38456 * 172.22919 * 8 6 5 10 10 C 1.34773 * 120.98260 * 129.48669 * 9 8 6 11 11 O 1.21592 * 120.00327 * 354.78758 * 10 9 8 12 12 N 1.34774 * 120.00022 * 174.78298 * 10 9 8 13 13 C 1.46508 * 120.00091 * 184.97665 * 12 10 9 14 14 C 1.52997 * 109.47029 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46992 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47440 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00487 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00191 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99830 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47338 * 89.99678 * 20 18 16 22 22 H 1.48493 * 109.47293 * 209.99679 * 20 18 16 23 23 H 1.48498 * 109.47364 * 329.99846 * 20 18 16 24 24 C 1.47151 * 118.03586 * 309.46575 * 9 8 6 25 25 C 1.53295 * 108.38224 * 50.53271 * 24 9 8 26 26 O 1.42947 * 109.26689 * 307.72254 * 25 24 9 27 27 H 1.09002 * 109.47467 * 174.48813 * 1 2 3 28 28 H 1.08997 * 109.47323 * 294.48666 * 1 2 3 29 29 H 1.09005 * 109.47336 * 54.49208 * 1 2 3 30 30 H 1.08995 * 109.47113 * 300.00339 * 5 2 1 31 31 H 1.09003 * 109.46663 * 60.00156 * 5 2 1 32 32 H 1.08998 * 109.68314 * 291.94963 * 8 6 5 33 33 H 1.09003 * 109.68456 * 52.47053 * 8 6 5 34 34 H 0.96996 * 120.00030 * 4.97907 * 12 10 9 35 35 H 1.08996 * 109.47094 * 300.00526 * 13 12 10 36 36 H 1.09002 * 109.46799 * 60.00358 * 13 12 10 37 37 H 1.08996 * 109.47784 * 300.00314 * 14 13 12 38 38 H 1.09006 * 109.46926 * 60.00103 * 14 13 12 39 39 H 1.09003 * 109.47150 * 300.00068 * 15 14 13 40 40 H 1.08998 * 109.47173 * 59.99969 * 15 14 13 41 41 H 0.97001 * 119.99996 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.68035 * 170.25953 * 24 9 8 43 43 H 1.09006 * 109.67772 * 290.81155 * 24 9 8 44 44 H 1.08996 * 109.51255 * 67.62775 * 25 24 9 45 45 H 1.09008 * 109.51025 * 187.72381 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7358 -1.6152 6 6 3.7054 -0.8186 -1.7983 7 1 4.1342 -1.4368 -1.0096 8 6 4.0232 -1.4379 -3.1641 9 7 5.4730 -1.3347 -3.3945 10 6 6.1945 -2.4103 -3.7670 11 8 5.6683 -3.5049 -3.8257 12 7 7.4995 -2.2728 -4.0746 13 6 8.2569 -3.4189 -4.5838 14 6 9.7025 -2.9961 -4.8523 15 6 10.4936 -4.1931 -5.3835 16 6 11.9177 -3.7770 -5.6474 17 1 12.2277 -2.7604 -5.4551 18 6 12.8253 -4.6942 -6.1334 19 7 14.0679 -4.3308 -6.3642 20 14 12.2893 -6.4525 -6.4654 21 1 11.8019 -6.5659 -7.8636 22 1 13.4423 -7.3672 -6.2675 23 1 11.1976 -6.8224 -5.5292 24 6 6.1115 -0.0224 -3.2065 25 6 5.6919 0.5280 -1.8387 26 8 4.2667 0.4947 -1.7339 27 1 -0.3634 -1.0229 -0.0987 28 1 -0.3634 0.4259 0.9352 29 1 -0.3634 0.5969 -0.8366 30 1 1.7610 -1.7370 -1.6663 31 1 1.7611 -0.1172 -2.4042 32 1 3.7242 -2.4860 -3.1704 33 1 3.4875 -0.8986 -3.9453 34 1 7.9372 -1.4150 -3.9588 35 1 8.2434 -4.2203 -3.8452 36 1 7.8036 -3.7711 -5.5105 37 1 9.7156 -2.1948 -5.5911 38 1 10.1560 -2.6436 -3.9259 39 1 10.4806 -4.9941 -4.6443 40 1 10.0402 -4.5461 -6.3098 41 1 14.7063 -4.9760 -6.7065 42 1 7.1952 -0.1331 -3.2410 43 1 5.7865 0.6598 -3.9922 44 1 6.1287 -0.0848 -1.0502 45 1 6.0413 1.5555 -1.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119943556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:49 Heat of formation + Delta-G solvation = -134.656581 kcal Electronic energy + Delta-G solvation = -26792.269192 eV Core-core repulsion = 22745.013078 eV Total energy + Delta-G solvation = -4047.256114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.77359 -38.95626 -37.34999 -36.37618 -35.69456 -35.05817 -33.81264 -33.18173 -31.41144 -30.24769 -29.28309 -27.90320 -26.26827 -23.98167 -22.99350 -21.87099 -20.63966 -19.80344 -19.24158 -18.38165 -17.50269 -17.16718 -16.78808 -16.68980 -16.23191 -16.12100 -15.95422 -15.39177 -15.17526 -14.64470 -14.59748 -14.21632 -13.88876 -13.85044 -13.76214 -13.61565 -13.37143 -12.99246 -12.71217 -12.41795 -12.34344 -12.33464 -12.04631 -11.96329 -11.90145 -11.53154 -11.36081 -11.09257 -10.95275 -10.91972 -10.59440 -10.30812 -10.04691 -9.85851 -9.71038 -9.24891 -9.10870 -8.65451 -8.57072 -6.07894 -4.06738 -0.51803 2.26977 2.36258 2.93619 3.10408 3.23331 3.30124 3.37882 3.42159 3.56753 3.77631 4.04310 4.15507 4.25543 4.28577 4.43041 4.46990 4.52966 4.67559 4.70541 4.74728 5.00725 5.10202 5.16441 5.26200 5.27226 5.33467 5.48002 5.49612 5.64379 5.98563 6.04588 6.31288 6.42443 6.52160 6.59370 6.76803 6.79856 7.20465 7.34039 7.73355 7.86021 8.47680 8.51953 8.95678 9.54280 11.05257 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.001894 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.683372 B =14780.009202 C =15142.978211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.427 3.573 3 O -0.917 6.917 4 O -0.939 6.939 5 C -0.610 4.610 6 C 0.085 3.915 7 H 0.083 0.917 8 C 0.112 3.888 9 N -0.639 5.639 10 C 0.707 3.293 11 O -0.589 6.589 12 N -0.739 5.739 13 C 0.131 3.869 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.074 3.926 25 C 0.048 3.952 26 O -0.370 6.370 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.775 12.222 10.855 33.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.607 3.393 3 O -0.914 6.914 4 O -0.936 6.936 5 C -0.738 4.738 6 C 0.025 3.975 7 H 0.101 0.899 8 C -0.013 4.013 9 N -0.378 5.378 10 C 0.409 3.591 11 O -0.466 6.466 12 N -0.395 5.395 13 C 0.008 3.992 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.049 4.049 25 C -0.029 4.029 26 O -0.288 6.288 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -29.496 11.772 11.385 33.737 hybrid contribution -0.348 -0.969 -0.949 1.400 sum -29.844 10.803 10.436 33.410 Atomic orbital electron populations 1.30346 1.27191 1.11563 1.11901 1.07776 0.78093 0.76157 0.77246 1.93628 1.78336 1.33673 1.85803 1.93617 1.79087 1.67385 1.53485 1.30355 1.02866 1.15157 1.25386 1.22032 0.89926 0.86296 0.99278 0.89901 1.22013 0.80162 1.03715 0.95370 1.47276 1.08188 1.08500 1.73852 1.15850 0.81737 0.83549 0.77982 1.90911 1.71006 1.24239 1.60491 1.45497 1.08656 1.15328 1.70054 1.21564 0.91945 0.87023 0.98658 1.21710 0.91310 1.00873 1.01206 1.19498 0.95880 0.93576 0.95913 1.21087 0.92456 0.98760 1.43743 0.91012 1.25028 0.94782 0.98806 0.94874 1.69908 1.03454 1.35214 1.45552 0.86772 0.78455 0.84893 0.79161 1.20257 1.21362 1.18882 1.22387 0.98868 0.85020 0.98670 1.23064 0.80704 1.03283 0.95837 1.88063 1.20959 1.25729 1.94087 0.85356 0.85179 0.85259 0.83316 0.83740 0.87484 0.90486 0.76935 0.91763 0.91929 0.92140 0.92100 0.96248 0.96712 0.92685 0.88892 0.90042 0.91974 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.29 10.62 101.05 1.07 -0.22 16 2 S 2.43 14.41 5.25 -107.50 -0.56 13.85 16 3 O -0.92 -9.13 17.12 -63.73 -1.09 -10.22 16 4 O -0.94 -9.42 18.10 -57.83 -1.05 -10.46 16 5 C -0.61 -2.56 5.54 37.16 0.21 -2.35 16 6 C 0.08 0.69 2.83 -26.58 -0.08 0.61 16 7 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 8 C 0.11 1.02 5.94 -3.53 -0.02 1.00 16 9 N -0.64 -6.99 3.02 -178.00 -0.54 -7.53 16 10 C 0.71 10.37 8.31 -86.92 -0.72 9.65 16 11 O -0.59 -10.82 15.82 5.28 0.08 -10.74 16 12 N -0.74 -10.19 5.47 -65.22 -0.36 -10.54 16 13 C 0.13 2.16 5.68 -4.04 -0.02 2.14 16 14 C -0.11 -2.07 5.27 -26.74 -0.14 -2.21 16 15 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 16 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 17 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 20 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 24 C 0.07 0.58 6.57 -3.53 -0.02 0.56 16 25 C 0.05 0.37 6.98 37.31 0.26 0.63 16 26 O -0.37 -3.42 9.19 -48.16 -0.44 -3.86 16 27 H 0.13 0.02 8.14 -51.92 -0.42 -0.40 16 28 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.13 0.02 8.14 -51.92 -0.42 -0.41 16 30 H 0.15 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.11 1.06 7.06 -51.93 -0.37 0.70 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 4.36 6.03 -40.82 -0.25 4.11 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 0.62 5.78 -51.93 -0.30 0.32 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -40.53 376.98 -9.36 -49.89 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.18 Total: -2.56 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.01 Total: -3.66 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.12 Total: -44.89 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -2.50 Total: -35.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 14.41 SS G_CDS: -0.56 Total: 13.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.53 -9.36 -49.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119943556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.768 kcal (2) G-P(sol) polarization free energy of solvation -40.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds