Wall clock time and date at job start Tue Mar 31 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 108.57727 * 2 1 4 4 O 1.42100 * 108.57802 * 131.02381 * 2 1 3 5 5 C 1.81402 * 101.92393 * 245.50745 * 2 1 3 6 6 C 1.52995 * 109.47223 * 179.97438 * 5 2 1 7 7 H 1.09001 * 109.51006 * 60.00451 * 6 5 2 8 8 C 1.53290 * 109.51249 * 180.10309 * 6 5 2 9 9 N 1.47157 * 108.38456 * 172.22919 * 8 6 5 10 10 C 1.34773 * 120.98260 * 129.48669 * 9 8 6 11 11 O 1.21592 * 120.00327 * 354.78758 * 10 9 8 12 12 N 1.34774 * 120.00022 * 174.78298 * 10 9 8 13 13 C 1.46508 * 120.00091 * 184.97665 * 12 10 9 14 14 C 1.52997 * 109.47029 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46992 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47440 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00487 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00191 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99830 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47338 * 89.99678 * 20 18 16 22 22 H 1.48493 * 109.47293 * 209.99679 * 20 18 16 23 23 H 1.48498 * 109.47364 * 329.99846 * 20 18 16 24 24 C 1.47151 * 118.03586 * 309.46575 * 9 8 6 25 25 C 1.53295 * 108.38224 * 50.53271 * 24 9 8 26 26 O 1.42947 * 109.26689 * 307.72254 * 25 24 9 27 27 H 1.09002 * 109.47467 * 174.48813 * 1 2 3 28 28 H 1.08997 * 109.47323 * 294.48666 * 1 2 3 29 29 H 1.09005 * 109.47336 * 54.49208 * 1 2 3 30 30 H 1.08995 * 109.47113 * 300.00339 * 5 2 1 31 31 H 1.09003 * 109.46663 * 60.00156 * 5 2 1 32 32 H 1.08998 * 109.68314 * 291.94963 * 8 6 5 33 33 H 1.09003 * 109.68456 * 52.47053 * 8 6 5 34 34 H 0.96996 * 120.00030 * 4.97907 * 12 10 9 35 35 H 1.08996 * 109.47094 * 300.00526 * 13 12 10 36 36 H 1.09002 * 109.46799 * 60.00358 * 13 12 10 37 37 H 1.08996 * 109.47784 * 300.00314 * 14 13 12 38 38 H 1.09006 * 109.46926 * 60.00103 * 14 13 12 39 39 H 1.09003 * 109.47150 * 300.00068 * 15 14 13 40 40 H 1.08998 * 109.47173 * 59.99969 * 15 14 13 41 41 H 0.97001 * 119.99996 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.68035 * 170.25953 * 24 9 8 43 43 H 1.09006 * 109.67772 * 290.81155 * 24 9 8 44 44 H 1.08996 * 109.51255 * 67.62775 * 25 24 9 45 45 H 1.09008 * 109.51025 * 187.72381 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7358 -1.6152 6 6 3.7054 -0.8186 -1.7983 7 1 4.1342 -1.4368 -1.0096 8 6 4.0232 -1.4379 -3.1641 9 7 5.4730 -1.3347 -3.3945 10 6 6.1945 -2.4103 -3.7670 11 8 5.6683 -3.5049 -3.8257 12 7 7.4995 -2.2728 -4.0746 13 6 8.2569 -3.4189 -4.5838 14 6 9.7025 -2.9961 -4.8523 15 6 10.4936 -4.1931 -5.3835 16 6 11.9177 -3.7770 -5.6474 17 1 12.2277 -2.7604 -5.4551 18 6 12.8253 -4.6942 -6.1334 19 7 14.0679 -4.3308 -6.3642 20 14 12.2893 -6.4525 -6.4654 21 1 11.8019 -6.5659 -7.8636 22 1 13.4423 -7.3672 -6.2675 23 1 11.1976 -6.8224 -5.5292 24 6 6.1115 -0.0224 -3.2065 25 6 5.6919 0.5280 -1.8387 26 8 4.2667 0.4947 -1.7339 27 1 -0.3634 -1.0229 -0.0987 28 1 -0.3634 0.4259 0.9352 29 1 -0.3634 0.5969 -0.8366 30 1 1.7610 -1.7370 -1.6663 31 1 1.7611 -0.1172 -2.4042 32 1 3.7242 -2.4860 -3.1704 33 1 3.4875 -0.8986 -3.9453 34 1 7.9372 -1.4150 -3.9588 35 1 8.2434 -4.2203 -3.8452 36 1 7.8036 -3.7711 -5.5105 37 1 9.7156 -2.1948 -5.5911 38 1 10.1560 -2.6436 -3.9259 39 1 10.4806 -4.9941 -4.6443 40 1 10.0402 -4.5461 -6.3098 41 1 14.7063 -4.9760 -6.7065 42 1 7.1952 -0.1331 -3.2410 43 1 5.7865 0.6598 -3.9922 44 1 6.1287 -0.0848 -1.0502 45 1 6.0413 1.5555 -1.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119943556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:48 Heat of formation + Delta-G solvation = -167.716504 kcal Electronic energy + Delta-G solvation = -26793.702778 eV Core-core repulsion = 22745.013078 eV Total energy + Delta-G solvation = -4048.689700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68382 -39.83762 -37.91995 -37.09336 -36.93900 -35.98490 -35.17523 -34.25251 -33.15059 -30.52319 -29.86562 -29.27989 -27.39919 -24.65334 -24.54479 -22.70214 -22.21897 -20.84266 -19.78388 -19.39960 -18.83975 -18.12410 -17.68034 -17.34672 -17.13682 -16.92128 -16.65289 -16.34917 -16.17889 -15.87924 -15.76113 -15.34339 -15.09692 -14.76092 -14.60161 -14.05935 -13.89261 -13.84217 -13.80176 -13.61828 -13.49159 -13.01360 -13.00353 -12.93642 -12.72749 -12.65607 -12.54772 -12.05153 -11.95098 -11.87509 -11.78340 -11.60653 -11.48297 -11.38180 -11.33083 -11.12435 -10.75943 -10.26299 -9.55165 -8.29139 -6.32945 -0.91069 1.36988 1.38920 1.43699 1.50655 1.92005 1.99250 2.36566 2.42714 2.77314 2.83375 3.06657 3.20098 3.58002 3.59727 3.80784 3.85837 3.99361 4.12422 4.14738 4.17225 4.19413 4.20934 4.36339 4.46869 4.50709 4.61026 4.66957 4.77328 4.86333 4.88627 4.90358 5.01856 5.03263 5.27491 5.37903 5.49008 5.55764 5.64947 5.76909 5.90366 6.27516 6.74804 6.82563 7.31833 7.41620 8.87115 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.001894 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.683372 B =14780.009202 C =15142.978211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.418 3.582 3 O -0.970 6.970 4 O -0.994 6.994 5 C -0.600 4.600 6 C 0.077 3.923 7 H 0.064 0.936 8 C 0.108 3.892 9 N -0.636 5.636 10 C 0.703 3.297 11 O -0.630 6.630 12 N -0.732 5.732 13 C 0.146 3.854 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.248 1.248 24 C 0.072 3.928 25 C 0.043 3.957 26 O -0.381 6.381 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.408 0.592 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.848 12.208 10.235 36.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.605 3.395 3 O -0.967 6.967 4 O -0.991 6.991 5 C -0.729 4.729 6 C 0.018 3.982 7 H 0.082 0.918 8 C -0.016 4.016 9 N -0.374 5.374 10 C 0.404 3.596 11 O -0.512 6.512 12 N -0.390 5.390 13 C 0.021 3.979 14 C -0.137 4.137 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.172 1.172 24 C -0.050 4.050 25 C -0.034 4.034 26 O -0.300 6.300 27 H 0.173 0.827 28 H 0.153 0.847 29 H 0.175 0.825 30 H 0.199 0.801 31 H 0.194 0.806 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.550 11.831 10.806 36.281 hybrid contribution 0.555 -0.858 -0.752 1.269 sum -31.995 10.973 10.054 35.287 Atomic orbital electron populations 1.30119 1.21260 1.14084 1.13510 1.07574 0.80180 0.74553 0.77217 1.93563 1.80690 1.35792 1.86625 1.93549 1.81421 1.68064 1.56097 1.30316 1.00374 1.17621 1.24557 1.22119 0.92376 0.85664 0.98081 0.91768 1.22202 0.79190 1.03594 0.96590 1.47361 1.08928 1.08570 1.72503 1.15990 0.81783 0.83829 0.77949 1.90877 1.71812 1.26141 1.62352 1.45232 1.08564 1.15269 1.69890 1.21185 0.90836 0.87551 0.98292 1.21474 0.91922 0.99059 1.01261 1.19462 0.93669 0.95465 0.96411 1.21459 0.95002 0.97403 1.42956 0.94362 1.25982 0.94736 1.03692 0.94866 1.70055 1.04887 1.36953 1.47141 0.85700 0.78462 0.79073 0.79695 1.19182 1.21111 1.17169 1.22607 0.99438 0.83685 0.99282 1.23215 0.80340 1.04414 0.95443 1.88070 1.21560 1.26292 1.94065 0.82687 0.84706 0.82462 0.80096 0.80591 0.88508 0.88254 0.75303 0.92744 0.92377 0.91549 0.91801 0.96132 0.96069 0.92534 0.87835 0.88272 0.92861 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.30 10.62 113.37 1.20 0.90 16 2 S 2.42 26.64 5.25 -56.49 -0.30 26.35 16 3 O -0.97 -19.41 17.12 -121.73 -2.08 -21.49 16 4 O -0.99 -20.65 18.10 -127.37 -2.30 -22.95 16 5 C -0.60 -3.58 5.54 71.98 0.40 -3.18 16 6 C 0.08 1.17 2.83 30.69 0.09 1.26 16 7 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 8 C 0.11 1.79 5.94 86.35 0.51 2.31 16 9 N -0.64 -13.06 3.02 -835.35 -2.52 -15.58 16 10 C 0.70 19.95 8.31 179.06 1.49 21.44 16 11 O -0.63 -22.98 15.82 -4.00 -0.06 -23.04 16 12 N -0.73 -19.23 5.47 -478.53 -2.62 -21.84 16 13 C 0.15 4.62 5.68 86.38 0.49 5.11 16 14 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.53 -29.90 9.66 25.60 0.25 -29.66 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 18 C 0.00 0.24 5.47 84.66 0.46 0.70 16 19 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 20 Si 0.95 44.25 27.47 68.60 1.88 46.14 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -10.86 6.54 99.48 0.65 -10.20 16 24 C 0.07 1.01 6.57 86.35 0.57 1.58 16 25 C 0.04 0.62 6.98 72.08 0.50 1.12 16 26 O -0.38 -6.68 9.19 -136.62 -1.26 -7.93 16 27 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.16 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.18 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.18 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.10 1.83 7.06 -2.39 -0.02 1.81 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 8.31 6.03 -92.71 -0.56 7.75 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 39 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 40 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.10 1.19 5.78 -2.39 -0.01 1.18 16 43 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -91.16 376.98 -2.34 -93.50 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.37 Total: 7.89 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 6.24 Total: -2.20 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.84 Total: -96.26 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -5.71 Total: -75.41 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 26.64 SS G_CDS: -0.30 Total: 26.35 kcal Total: -91.16 -2.34 -93.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119943556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.212 kcal (2) G-P(sol) polarization free energy of solvation -91.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds