Wall clock time and date at job start Tue Mar 31 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46888 * 299.99842 * 3 2 1 6 6 H 1.48506 * 109.47086 * 59.99313 * 3 2 1 7 7 C 1.38800 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00343 * 180.02562 * 7 2 1 9 9 S 1.76209 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99748 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46863 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00399 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.46510 * 120.00274 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47091 * 179.97438 * 14 13 11 16 16 N 1.46907 * 109.47194 * 180.02562 * 15 14 13 17 17 C 1.46903 * 111.00077 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46721 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46977 * 179.97438 * 18 17 16 20 20 C 1.32569 * 119.99865 * 127.27868 * 19 18 17 21 21 C 1.47813 * 119.99838 * 8.22628 * 20 19 18 22 22 C 1.39542 * 120.13988 * 216.02460 * 21 20 19 23 23 C 1.37972 * 119.85389 * 180.02562 * 22 21 20 24 24 C 1.38339 * 120.14633 * 0.02562 * 23 22 21 25 25 C 1.38344 * 120.28213 * 0.02562 * 24 23 22 26 26 C 1.37974 * 120.14717 * 359.97438 * 25 24 23 27 27 H 0.96999 * 119.99886 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47146 * 60.00403 * 10 9 7 29 29 H 1.08997 * 109.47269 * 300.00276 * 10 9 7 30 30 H 0.97000 * 120.00118 * 0.02562 * 13 11 10 31 31 H 1.09007 * 109.46714 * 59.99691 * 14 13 11 32 32 H 1.08995 * 109.46895 * 300.00278 * 14 13 11 33 33 H 1.08998 * 109.47652 * 60.00431 * 15 14 13 34 34 H 1.09007 * 109.47639 * 299.99566 * 15 14 13 35 35 H 1.00898 * 110.99793 * 56.04429 * 16 15 14 36 36 H 1.08994 * 109.47349 * 60.00033 * 17 16 15 37 37 H 1.08997 * 109.47102 * 299.99883 * 17 16 15 38 38 H 1.09003 * 109.47325 * 60.00047 * 18 17 16 39 39 H 1.08997 * 109.47291 * 299.99834 * 18 17 16 40 40 H 1.08001 * 120.00282 * 307.28297 * 19 18 17 41 41 H 1.08003 * 120.00354 * 188.22293 * 20 19 18 42 42 H 1.08003 * 120.06751 * 0.04482 * 22 21 20 43 43 H 1.08000 * 119.92345 * 179.72676 * 23 22 21 44 44 H 1.08002 * 119.85908 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.92472 * 180.02562 * 25 24 23 46 46 H 1.07993 * 120.07195 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3027 0.0036 12 8 0.7910 -5.5023 0.0029 13 7 2.8439 -6.3431 0.0049 14 6 2.3302 -7.7152 0.0050 15 6 3.5021 -8.6986 0.0060 16 7 2.9870 -10.0744 0.0054 17 6 4.0867 -11.0483 0.0069 18 6 3.5121 -12.4663 0.0069 19 6 4.6402 -13.4655 0.0079 20 6 4.6748 -14.4253 0.9217 21 6 3.5214 -14.6291 1.8234 22 6 3.7277 -15.0101 3.1498 23 6 2.6468 -15.1992 3.9862 24 6 1.3607 -15.0124 3.5123 25 6 1.1493 -14.6357 2.1980 26 6 2.2216 -14.4434 1.3513 27 1 -0.4850 0.8400 -0.0004 28 1 3.1243 -3.7307 0.8928 29 1 3.1244 -3.7322 -0.8871 30 1 3.8007 -6.1836 0.0059 31 1 1.7224 -7.8756 -0.8857 32 1 1.7206 -7.8748 0.8943 33 1 4.1102 -8.5384 0.8963 34 1 4.1114 -8.5389 -0.8837 35 1 2.3682 -10.2284 -0.7765 36 1 4.6982 -10.9045 0.8977 37 1 4.7006 -10.9047 -0.8822 38 1 2.9003 -12.6104 -0.8836 39 1 2.8985 -12.6097 0.8963 40 1 5.4206 -13.3996 -0.7358 41 1 5.5456 -15.0584 1.0073 42 1 4.7314 -15.1563 3.5209 43 1 2.8051 -15.4984 5.0118 44 1 0.5179 -15.1613 4.1711 45 1 0.1427 -14.4911 1.8342 46 1 2.0552 -14.1489 0.3257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:00 Heat of formation + Delta-G solvation = 0.253053 kcal Electronic energy + Delta-G solvation = -23689.669924 eV Core-core repulsion = 20091.405945 eV Total energy + Delta-G solvation = -3598.263979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.80578 -39.18196 -37.42562 -35.67836 -34.11915 -32.42313 -31.65847 -31.10584 -29.94811 -28.75476 -26.72426 -25.45473 -23.62555 -22.89290 -22.34541 -21.94109 -20.34528 -19.61037 -17.85398 -16.94456 -16.67414 -16.27058 -16.09146 -15.94334 -15.57562 -15.16180 -14.80248 -14.76696 -14.60115 -14.37664 -13.95970 -13.80326 -13.73506 -13.38756 -13.09741 -12.96943 -12.55018 -12.40942 -12.21529 -11.98879 -11.85314 -11.55000 -11.43557 -11.30466 -11.06741 -11.04984 -11.01319 -10.75229 -10.14840 -9.80081 -9.41031 -9.23380 -9.07280 -8.88043 -8.83471 -8.57974 -8.22233 -6.49190 -6.21220 -3.91642 0.64171 1.05752 1.96389 2.98450 3.11626 3.21934 3.27308 3.31893 3.49341 3.59297 4.06152 4.20842 4.34773 4.51672 4.58901 4.61589 4.67751 4.74583 4.80677 4.83234 4.91470 5.08782 5.12906 5.14040 5.19035 5.20069 5.24641 5.25865 5.55278 5.61550 5.62149 5.64252 5.72435 5.78417 5.90789 5.93611 5.98642 6.03280 6.14652 6.18227 6.21682 6.39234 6.54189 6.64067 6.65871 6.98405 7.60416 7.70883 8.36004 8.62617 9.24205 10.86303 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.001391 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.377673 B =20126.339153 C =20635.959818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.687 5.687 17 C 0.066 3.934 18 C -0.109 4.109 19 C -0.138 4.138 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.108 4.108 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.344 0.656 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.235 -32.804 2.164 34.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.079 4.079 16 N -0.318 5.318 17 C -0.063 4.063 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.971 -33.050 2.849 34.365 hybrid contribution 2.872 1.405 -0.912 3.325 sum 11.843 -31.646 1.938 33.844 Atomic orbital electron populations 1.70030 1.05952 1.27341 1.46945 1.24995 0.95027 0.99035 0.94546 0.86112 0.79569 0.81878 0.77898 1.19634 1.20570 1.20562 1.22917 0.94952 0.91658 1.58834 0.90870 1.85413 1.04949 0.96331 1.96709 1.23526 1.06563 0.95350 1.04929 1.20295 0.86506 0.86232 0.75172 1.90708 1.15359 1.85582 1.47379 1.45903 1.09940 1.05467 1.78130 1.21141 0.95736 0.80344 1.02969 1.22087 0.96548 0.88054 1.01243 1.60279 1.19149 1.01971 1.50402 1.21886 0.92737 0.90926 1.00777 1.21180 0.97124 0.92445 1.03875 1.23218 0.99414 0.95426 0.97570 1.21677 0.96931 0.99697 0.95949 1.19064 0.93158 0.99868 0.93773 1.21263 0.99006 0.99565 0.93066 1.21100 0.92724 1.00414 0.99768 1.21242 0.97108 0.99497 0.95891 1.21142 0.99050 0.99635 0.94018 1.21466 0.91761 0.99042 1.00303 0.92235 0.89183 0.89241 0.76920 0.91823 0.90665 0.90315 0.94577 0.83826 0.90816 0.95168 0.90973 0.88603 0.86575 0.86178 0.86051 0.86061 0.86096 0.85835 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 10.07 7.85 -10.99 -0.09 9.99 16 12 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 13 N -0.74 -9.92 5.56 -60.29 -0.33 -10.26 16 14 C 0.12 1.46 5.93 -4.04 -0.02 1.43 16 15 C 0.05 0.43 5.80 -3.82 -0.02 0.41 16 16 N -0.69 -5.61 6.50 -113.78 -0.74 -6.35 16 17 C 0.07 0.46 5.67 -3.82 -0.02 0.44 16 18 C -0.11 -0.69 4.18 -27.88 -0.12 -0.81 16 19 C -0.14 -0.80 9.46 -36.21 -0.34 -1.14 16 20 C -0.12 -0.78 9.80 -37.57 -0.37 -1.15 16 21 C -0.06 -0.44 5.21 -105.01 -0.55 -0.99 16 22 C -0.11 -0.80 9.79 -39.19 -0.38 -1.18 16 23 C -0.12 -0.85 10.03 -39.64 -0.40 -1.25 16 24 C -0.12 -0.84 10.04 -39.51 -0.40 -1.24 16 25 C -0.12 -0.88 10.03 -39.64 -0.40 -1.27 16 26 C -0.11 -0.80 7.30 -39.20 -0.29 -1.09 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 31 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.34 2.52 8.73 -39.29 -0.34 2.18 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 39 H 0.10 0.74 4.73 -51.93 -0.25 0.50 16 40 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 42 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 46 H 0.13 0.81 6.13 -52.49 -0.32 0.49 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -35.11 400.45 -11.56 -46.67 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.13 Total: 2.53 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.97 Total: -13.78 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.34 Total: -42.15 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.11 -11.56 -46.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.923 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds