Wall clock time and date at job start Tue Mar 31 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47037 * 269.99421 * 3 2 1 5 5 H 1.48502 * 109.47234 * 29.99550 * 3 2 1 6 6 H 1.48502 * 109.47379 * 149.99683 * 3 2 1 7 7 C 1.38799 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46885 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00064 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00369 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47335 * 180.02562 * 14 13 11 16 16 N 1.46904 * 109.47113 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99985 * 185.13557 * 16 15 14 18 18 H 1.09003 * 109.25047 * 325.37252 * 17 16 15 19 19 C 1.52730 * 109.22579 * 84.81869 * 17 16 15 20 20 C 1.53322 * 108.38468 * 171.35596 * 19 17 16 21 21 C 1.52739 * 108.38478 * 290.12022 * 20 19 17 22 22 C 1.50636 * 110.58503 * 51.09277 * 21 20 19 23 23 C 1.38909 * 117.74986 * 162.46347 * 22 21 20 24 24 C 1.37940 * 120.54173 * 179.31584 * 23 22 21 25 25 C 1.38266 * 119.76919 * 0.63083 * 24 23 22 26 26 C 1.37928 * 119.77316 * 359.55116 * 25 24 23 27 27 C 1.37658 * 122.56449 * 342.28653 * 22 21 20 28 28 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47269 * 60.00147 * 10 9 7 30 30 H 1.08997 * 109.47359 * 299.99819 * 10 9 7 31 31 H 0.97008 * 120.00111 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46821 * 60.00096 * 14 13 11 33 33 H 1.08997 * 109.46969 * 300.00281 * 14 13 11 34 34 H 1.08999 * 109.47671 * 60.00148 * 15 14 13 35 35 H 1.09004 * 109.46849 * 300.00105 * 15 14 13 36 36 H 1.00892 * 111.00175 * 61.18138 * 16 15 14 37 37 H 1.08994 * 109.68776 * 291.08573 * 19 17 16 38 38 H 1.09003 * 109.67878 * 51.60154 * 19 17 16 39 39 H 1.09002 * 109.67720 * 49.84186 * 20 19 17 40 40 H 1.09001 * 109.68425 * 170.36189 * 20 19 17 41 41 H 1.09002 * 109.25097 * 171.37122 * 21 20 19 42 42 H 1.08991 * 109.25014 * 290.84248 * 21 20 19 43 43 H 1.08003 * 119.72922 * 359.60060 * 23 22 21 44 44 H 1.07996 * 120.11093 * 180.37375 * 24 23 22 45 45 H 1.07995 * 120.11071 * 179.82116 * 25 24 23 46 46 H 1.07997 * 119.72894 * 180.18451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.5024 -8.6985 0.0036 16 7 2.9873 -10.0743 0.0031 17 6 4.0817 -11.0463 0.1271 18 1 4.9593 -10.6681 -0.3973 19 6 4.4207 -11.2363 1.6041 20 6 5.4060 -12.4046 1.7276 21 6 4.6629 -13.6981 1.3996 22 6 3.9305 -13.5706 0.0895 23 6 3.5196 -14.7396 -0.5383 24 6 2.8321 -14.6892 -1.7331 25 6 2.5607 -13.4661 -2.3180 26 6 2.9711 -12.3044 -1.6980 27 6 3.6581 -12.3527 -0.4916 28 1 -0.4850 0.8401 -0.0004 29 1 3.1238 -3.7309 0.8925 30 1 3.1251 -3.7317 -0.8874 31 1 3.8010 -6.1835 0.0025 32 1 1.7220 -7.8754 -0.8878 33 1 1.7215 -7.8750 0.8922 34 1 4.1104 -8.5382 0.8939 35 1 4.1117 -8.5387 -0.8860 36 1 2.4361 -10.2537 -0.8226 37 1 4.8778 -10.3277 1.9958 38 1 3.5124 -11.4608 2.1633 39 1 6.2292 -12.2662 1.0267 40 1 5.7941 -12.4515 2.7451 41 1 5.3793 -14.5170 1.3326 42 1 3.9460 -13.9117 2.1923 43 1 3.7361 -15.6956 -0.0849 44 1 2.5106 -15.6022 -2.2121 45 1 2.0254 -13.4204 -3.2548 46 1 2.7561 -11.3493 -2.1539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:36 Heat of formation + Delta-G solvation = -23.937619 kcal Electronic energy + Delta-G solvation = -24707.622363 eV Core-core repulsion = 21108.309397 eV Total energy + Delta-G solvation = -3599.312965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65453 -39.15747 -37.31916 -35.78975 -34.29174 -32.42260 -31.85290 -30.64817 -29.92136 -28.67213 -26.78544 -25.45414 -23.69795 -23.25581 -22.41198 -21.74086 -20.32239 -19.74255 -17.88300 -17.36612 -16.37704 -16.08792 -16.01606 -15.86890 -15.71501 -15.03872 -14.82507 -14.78549 -14.58620 -14.17658 -13.90185 -13.84442 -13.55304 -13.31857 -13.07055 -12.66727 -12.57470 -12.52963 -12.35863 -12.05313 -11.82361 -11.76462 -11.46809 -11.27546 -11.05796 -11.01771 -10.89831 -10.75374 -10.66055 -9.81007 -9.42081 -9.31029 -9.06446 -9.05023 -8.87560 -8.65717 -8.22536 -6.49111 -6.20890 -3.91432 0.96611 0.99466 2.97204 3.11862 3.22761 3.26009 3.30348 3.36481 3.60344 4.06143 4.15520 4.21079 4.24619 4.47005 4.62227 4.63429 4.71817 4.74890 4.84862 4.87748 4.96093 5.02701 5.10241 5.14202 5.18859 5.23492 5.28408 5.44821 5.48015 5.56285 5.58321 5.63053 5.64679 5.77611 5.78657 5.89969 5.91523 5.99809 6.09946 6.14531 6.14699 6.25808 6.53954 6.62215 6.67225 6.96779 7.60158 7.70922 8.35862 8.62862 9.24326 10.86536 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.001632 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.992162 B =17153.593353 C =17713.149094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.124 3.876 15 C 0.048 3.952 16 N -0.681 5.681 17 C 0.131 3.869 18 H 0.056 0.944 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.067 4.067 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.076 4.076 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.346 0.654 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -31.015 -0.568 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.001 4.001 15 C -0.081 4.081 16 N -0.315 5.315 17 C 0.022 3.978 18 H 0.074 0.926 19 C -0.147 4.147 20 C -0.158 4.158 21 C -0.119 4.119 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.719 -31.231 0.099 33.019 hybrid contribution 2.739 1.359 -1.041 3.230 sum 13.459 -29.872 -0.942 32.778 Atomic orbital electron populations 1.70018 1.05950 1.27448 1.46843 1.24993 0.95028 0.99024 0.94549 0.86166 0.79404 0.81579 0.78330 1.20288 1.20741 1.19712 1.22873 0.94912 0.91675 1.58956 0.90928 1.85413 1.04926 0.96301 1.96713 1.23529 1.06569 0.95367 1.04915 1.20291 0.86506 0.86221 0.75184 1.90710 1.15360 1.85574 1.47349 1.45905 1.09919 1.05472 1.78151 1.21114 0.95695 0.80233 1.03020 1.22163 0.96564 0.88095 1.01324 1.60463 1.22648 1.01297 1.47078 1.20302 0.92434 0.88697 0.96416 0.92602 1.21578 0.99833 0.98213 0.95067 1.21560 0.98048 0.94263 1.01936 1.20505 0.98671 0.98521 0.94186 1.19590 0.98600 0.92182 0.96362 1.21171 0.99160 0.97756 0.95887 1.21097 0.98824 0.97884 0.95903 1.21062 1.00139 0.92481 1.00081 1.21084 0.98846 0.98515 0.95292 1.19574 0.99020 0.94052 0.94975 0.92182 0.89189 0.89258 0.76948 0.91855 0.90626 0.90132 0.94499 0.83284 0.91451 0.90419 0.91752 0.91011 0.90799 0.90344 0.86119 0.86042 0.85928 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 12 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 13 N -0.74 -9.83 5.56 -60.29 -0.33 -10.16 16 14 C 0.12 1.47 5.98 -4.04 -0.02 1.44 16 15 C 0.05 0.41 5.56 -3.82 -0.02 0.39 16 16 N -0.68 -5.83 6.27 -108.13 -0.68 -6.51 16 17 C 0.13 1.01 2.53 -69.04 -0.17 0.84 16 18 H 0.06 0.43 7.84 -51.93 -0.41 0.02 16 19 C -0.11 -0.78 5.38 -26.70 -0.14 -0.92 16 20 C -0.12 -0.69 5.98 -26.70 -0.16 -0.85 16 21 C -0.08 -0.48 5.67 -28.05 -0.16 -0.64 16 22 C -0.07 -0.51 5.74 -104.62 -0.60 -1.11 16 23 C -0.12 -0.86 9.61 -39.44 -0.38 -1.24 16 24 C -0.12 -0.83 10.05 -39.68 -0.40 -1.23 16 25 C -0.12 -0.88 10.05 -39.68 -0.40 -1.28 16 26 C -0.12 -0.95 8.85 -39.44 -0.35 -1.30 16 27 C -0.08 -0.63 5.55 -104.62 -0.58 -1.21 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 31 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.65 7.47 -51.93 -0.39 0.26 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.35 2.86 6.11 -39.30 -0.24 2.62 16 37 H 0.07 0.47 7.59 -51.93 -0.39 0.07 16 38 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.12 0.62 8.05 -52.48 -0.42 0.20 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.82 6.54 -52.49 -0.34 0.47 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -34.81 387.91 -11.79 -46.60 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.15 Total: 2.12 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.06 Total: -13.08 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.28 Total: -42.20 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.81 -11.79 -46.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.665 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds