Wall clock time and date at job start Tue Mar 31 2020 18:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47037 * 269.99421 * 3 2 1 5 5 H 1.48502 * 109.47234 * 29.99550 * 3 2 1 6 6 H 1.48502 * 109.47379 * 149.99683 * 3 2 1 7 7 C 1.38799 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46885 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00064 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00369 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47335 * 180.02562 * 14 13 11 16 16 N 1.46904 * 109.47113 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99985 * 185.13557 * 16 15 14 18 18 H 1.09003 * 109.25047 * 325.37252 * 17 16 15 19 19 C 1.52730 * 109.22579 * 84.81869 * 17 16 15 20 20 C 1.53322 * 108.38468 * 171.35596 * 19 17 16 21 21 C 1.52739 * 108.38478 * 290.12022 * 20 19 17 22 22 C 1.50636 * 110.58503 * 51.09277 * 21 20 19 23 23 C 1.38909 * 117.74986 * 162.46347 * 22 21 20 24 24 C 1.37940 * 120.54173 * 179.31584 * 23 22 21 25 25 C 1.38266 * 119.76919 * 0.63083 * 24 23 22 26 26 C 1.37928 * 119.77316 * 359.55116 * 25 24 23 27 27 C 1.37658 * 122.56449 * 342.28653 * 22 21 20 28 28 H 0.97002 * 120.00094 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47269 * 60.00147 * 10 9 7 30 30 H 1.08997 * 109.47359 * 299.99819 * 10 9 7 31 31 H 0.97008 * 120.00111 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46821 * 60.00096 * 14 13 11 33 33 H 1.08997 * 109.46969 * 300.00281 * 14 13 11 34 34 H 1.08999 * 109.47671 * 60.00148 * 15 14 13 35 35 H 1.09004 * 109.46849 * 300.00105 * 15 14 13 36 36 H 1.00892 * 111.00175 * 61.18138 * 16 15 14 37 37 H 1.08994 * 109.68776 * 291.08573 * 19 17 16 38 38 H 1.09003 * 109.67878 * 51.60154 * 19 17 16 39 39 H 1.09002 * 109.67720 * 49.84186 * 20 19 17 40 40 H 1.09001 * 109.68425 * 170.36189 * 20 19 17 41 41 H 1.09002 * 109.25097 * 171.37122 * 21 20 19 42 42 H 1.08991 * 109.25014 * 290.84248 * 21 20 19 43 43 H 1.08003 * 119.72922 * 359.60060 * 23 22 21 44 44 H 1.07996 * 120.11093 * 180.37375 * 24 23 22 45 45 H 1.07995 * 120.11071 * 179.82116 * 25 24 23 46 46 H 1.07997 * 119.72894 * 180.18451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.5024 -8.6985 0.0036 16 7 2.9873 -10.0743 0.0031 17 6 4.0817 -11.0463 0.1271 18 1 4.9593 -10.6681 -0.3973 19 6 4.4207 -11.2363 1.6041 20 6 5.4060 -12.4046 1.7276 21 6 4.6629 -13.6981 1.3996 22 6 3.9305 -13.5706 0.0895 23 6 3.5196 -14.7396 -0.5383 24 6 2.8321 -14.6892 -1.7331 25 6 2.5607 -13.4661 -2.3180 26 6 2.9711 -12.3044 -1.6980 27 6 3.6581 -12.3527 -0.4916 28 1 -0.4850 0.8401 -0.0004 29 1 3.1238 -3.7309 0.8925 30 1 3.1251 -3.7317 -0.8874 31 1 3.8010 -6.1835 0.0025 32 1 1.7220 -7.8754 -0.8878 33 1 1.7215 -7.8750 0.8922 34 1 4.1104 -8.5382 0.8939 35 1 4.1117 -8.5387 -0.8860 36 1 2.4361 -10.2537 -0.8226 37 1 4.8778 -10.3277 1.9958 38 1 3.5124 -11.4608 2.1633 39 1 6.2292 -12.2662 1.0267 40 1 5.7941 -12.4515 2.7451 41 1 5.3793 -14.5170 1.3326 42 1 3.9460 -13.9117 2.1923 43 1 3.7361 -15.6956 -0.0849 44 1 2.5106 -15.6022 -2.2121 45 1 2.0254 -13.4204 -3.2548 46 1 2.7561 -11.3493 -2.1539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:35 Heat of formation + Delta-G solvation = -46.865970 kcal Electronic energy + Delta-G solvation = -24708.616611 eV Core-core repulsion = 21108.309397 eV Total energy + Delta-G solvation = -3600.307213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20096 -40.59437 -38.00610 -36.53133 -35.30439 -34.58070 -32.66679 -31.21081 -31.10616 -29.49325 -27.84866 -27.44752 -24.26807 -23.85983 -23.13610 -22.38970 -21.71708 -20.27045 -19.83616 -18.09781 -17.76948 -17.17558 -16.91546 -16.87344 -16.52050 -16.43831 -16.09673 -15.89097 -15.31706 -15.21371 -14.98758 -14.68649 -14.51271 -14.37012 -14.08971 -13.88323 -13.61781 -13.17938 -13.16082 -13.14564 -12.90794 -12.86263 -12.62250 -12.51920 -12.43119 -12.21676 -11.81294 -11.72760 -11.42333 -11.17409 -11.13948 -10.99412 -10.27203 -10.15083 -9.89913 -9.59164 -9.25854 -8.66711 -8.34207 -6.12567 0.41920 0.45617 1.26755 1.43030 1.47110 1.57568 1.60520 2.18608 2.28087 2.80795 2.99951 3.22109 3.36898 3.60875 3.73738 3.85556 3.98084 4.02714 4.07677 4.14648 4.19677 4.27107 4.31237 4.34918 4.39501 4.47588 4.51294 4.54638 4.61284 4.77322 4.86785 4.90781 4.99757 5.01072 5.07189 5.10436 5.15882 5.30037 5.38618 5.42313 5.44069 5.57065 5.61942 5.72380 5.96314 6.11853 6.20257 6.30635 6.49542 7.06991 7.23821 8.75049 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.001632 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.992162 B =17153.593353 C =17713.149094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.127 3.873 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.134 3.866 18 H 0.060 0.940 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.081 4.081 22 C -0.079 4.079 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.092 4.092 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.417 0.583 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.346 0.654 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.952 -31.757 -0.526 35.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.002 3.998 15 C -0.068 4.068 16 N -0.325 5.325 17 C 0.025 3.975 18 H 0.078 0.922 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.118 4.118 22 C -0.080 4.080 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.092 4.092 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.255 0.745 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.153 0.847 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.679 -32.014 0.141 34.814 hybrid contribution 1.856 1.420 -1.066 2.569 sum 15.535 -30.595 -0.925 34.325 Atomic orbital electron populations 1.70187 1.08004 1.28607 1.47998 1.26142 0.95971 1.03362 0.93738 0.84940 0.78196 0.75961 0.78786 1.19307 1.20339 1.18140 1.23215 0.95388 0.91943 1.58876 0.89794 1.85615 1.10677 0.99334 1.97063 1.23366 1.03522 0.94135 1.06959 1.20085 0.86190 0.86729 0.75094 1.90700 1.17553 1.86124 1.50135 1.45596 1.10393 1.04944 1.75616 1.21161 0.96995 0.79820 1.01791 1.22022 0.94998 0.87190 1.02598 1.60456 1.23288 1.01446 1.47300 1.20296 0.92070 0.88314 0.96779 0.92209 1.21564 0.99561 0.99022 0.94430 1.21546 0.97621 0.93526 1.02705 1.20542 0.98860 0.99096 0.93317 1.19882 0.98760 0.92237 0.97095 1.21463 0.98941 0.98436 0.96005 1.21398 0.98508 0.98504 0.96005 1.21318 1.00335 0.92617 1.00726 1.21257 0.99208 0.99065 0.95576 1.19728 0.99655 0.94504 0.95341 0.92004 0.87035 0.87020 0.74536 0.92699 0.92392 0.89054 0.92890 0.83273 0.91103 0.91945 0.91549 0.89824 0.89417 0.90277 0.84365 0.84246 0.84707 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 11 C 0.53 19.78 7.85 87.66 0.69 20.47 16 12 O -0.57 -26.85 15.86 -3.03 -0.05 -26.89 16 13 N -0.71 -17.60 5.56 -463.06 -2.57 -20.17 16 14 C 0.13 2.87 5.98 86.38 0.52 3.39 16 15 C 0.06 0.92 5.56 86.30 0.48 1.40 16 16 N -0.69 -11.13 6.27 -496.02 -3.11 -14.24 16 17 C 0.13 1.92 2.53 44.06 0.11 2.03 16 18 H 0.06 0.81 7.84 -2.39 -0.02 0.79 16 19 C -0.11 -1.40 5.38 30.61 0.16 -1.24 16 20 C -0.12 -1.14 5.98 30.62 0.18 -0.95 16 21 C -0.08 -0.83 5.67 29.74 0.17 -0.67 16 22 C -0.08 -1.13 5.74 -19.86 -0.11 -1.25 16 23 C -0.13 -1.68 9.61 22.36 0.21 -1.47 16 24 C -0.13 -1.62 10.05 22.21 0.22 -1.39 16 25 C -0.13 -1.86 10.05 22.20 0.22 -1.63 16 26 C -0.13 -2.04 8.85 22.36 0.20 -1.85 16 27 C -0.09 -1.44 5.55 -19.86 -0.11 -1.55 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 31 H 0.42 7.09 8.47 -92.70 -0.79 6.31 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.21 7.47 -2.39 -0.02 1.20 16 35 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.35 5.53 6.11 -89.70 -0.55 4.98 16 37 H 0.07 0.85 7.59 -2.39 -0.02 0.84 16 38 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.07 0.64 8.10 -2.39 -0.02 0.62 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.65 8.13 -2.39 -0.02 0.63 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.14 1.18 8.05 -2.91 -0.02 1.16 16 44 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.12 1.65 6.54 -2.91 -0.02 1.64 16 Total: -1.00 -77.64 387.91 -0.43 -78.07 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.34 Total: 22.12 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.50 Total: -18.74 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -5.39 Total: -90.38 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.64 -0.43 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.203 kcal (2) G-P(sol) polarization free energy of solvation -77.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds