Wall clock time and date at job start Tue Mar 31 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47017 * 239.99862 * 3 2 1 5 5 H 1.48498 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47212 * 119.99957 * 3 2 1 7 7 C 1.37872 * 120.00658 * 180.02562 * 2 1 3 8 8 C 1.51276 * 120.84597 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53349 * 231.32600 * 8 7 2 10 10 C 1.52959 * 109.40468 * 305.37215 * 9 8 7 11 11 H 1.08998 * 109.41279 * 303.56220 * 10 9 8 12 12 N 1.46499 * 109.41080 * 183.70792 * 10 9 8 13 13 C 1.34783 * 119.99922 * 154.86218 * 12 10 9 14 14 O 1.21278 * 119.99745 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99831 * 179.97438 * 13 12 10 16 16 N 1.46906 * 109.47029 * 173.78977 * 15 13 12 17 17 C 1.47340 * 110.99860 * 169.52823 * 16 15 13 18 18 C 1.53357 * 109.17143 * 52.22282 * 17 16 15 19 19 C 1.51416 * 108.07229 * 48.84977 * 18 17 16 20 20 S 1.75588 * 125.99673 * 164.43844 * 19 18 17 21 21 C 1.75781 * 91.04388 * 180.09123 * 20 19 18 22 22 C 1.33021 * 109.60550 * 359.97438 * 21 20 19 23 23 C 1.34798 * 123.95831 * 344.49787 * 19 18 17 24 24 C 1.46903 * 111.00091 * 293.60337 * 16 15 13 25 25 C 1.52961 * 109.76147 * 63.63553 * 10 9 8 26 26 C 1.51272 * 120.85400 * 179.97438 * 7 2 1 27 27 H 0.96990 * 120.00329 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.62819 * 111.61380 * 8 7 2 29 29 H 1.08991 * 109.62869 * 351.03903 * 8 7 2 30 30 H 1.08997 * 109.47833 * 185.39380 * 9 8 7 31 31 H 1.08997 * 109.49385 * 65.36140 * 9 8 7 32 32 H 0.96996 * 120.00000 * 334.85533 * 12 10 9 33 33 H 1.09001 * 109.47177 * 53.79043 * 15 13 12 34 34 H 1.08999 * 109.47146 * 293.78562 * 15 13 12 35 35 H 1.09006 * 109.47538 * 292.33315 * 17 16 15 36 36 H 1.09006 * 109.52723 * 172.14503 * 17 16 15 37 37 H 1.09000 * 109.74007 * 289.20948 * 18 17 16 38 38 H 1.08992 * 109.74559 * 168.49712 * 18 17 16 39 39 H 1.08004 * 125.20501 * 179.97438 * 21 20 19 40 40 H 1.08001 * 122.16983 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.60979 * 168.74896 * 24 16 15 42 42 H 1.09007 * 109.60923 * 48.40876 * 24 16 15 43 43 H 1.09004 * 109.47855 * 56.34670 * 25 10 9 44 44 H 1.08998 * 109.48109 * 176.38730 * 25 10 9 45 45 H 1.09004 * 109.62219 * 248.38846 * 26 7 2 46 46 H 1.08995 * 109.62542 * 8.76727 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8239 -3.3830 1.1333 10 6 3.3409 -3.5072 0.9810 11 1 3.5742 -3.9109 -0.0042 12 7 3.8615 -4.4082 2.0122 13 6 5.0176 -5.0702 1.8074 14 8 5.6264 -4.9204 0.7693 15 6 5.5535 -5.9966 2.8684 16 7 6.7326 -6.7037 2.3510 17 6 7.4300 -7.4265 3.4290 18 6 6.4229 -8.3078 4.1780 19 6 5.6310 -9.0916 3.1527 20 16 4.6368 -10.5025 3.4752 21 6 4.2077 -10.6286 1.7752 22 6 4.8024 -9.6548 1.0914 23 6 5.5958 -8.7921 1.8389 24 6 6.3635 -7.6127 1.2576 25 6 3.9904 -2.1308 1.1333 26 6 3.5172 -1.2163 -0.0011 27 1 -0.4850 0.8399 -0.0004 28 1 1.4194 -3.0189 -0.9552 29 1 0.2039 -2.3410 0.1598 30 1 1.3717 -4.3737 1.0881 31 1 1.5915 -2.9207 2.0927 32 1 3.3744 -4.5282 2.8424 33 1 4.7855 -6.7209 3.1399 34 1 5.8342 -5.4176 3.7482 35 1 7.8718 -6.7093 4.1208 36 1 8.2136 -8.0517 3.0008 37 1 5.7494 -7.6815 4.7631 38 1 6.9535 -8.9947 4.8371 39 1 3.5602 -11.3815 1.3506 40 1 4.6772 -9.5420 0.0246 41 1 7.2646 -7.9719 0.7606 42 1 5.7352 -7.0854 0.5397 43 1 3.7056 -1.6986 2.0927 44 1 5.0746 -2.2334 1.0881 45 1 3.8772 -1.5996 -0.9559 46 1 3.8983 -0.2072 0.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142223743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:16 Heat of formation + Delta-G solvation = -8.586703 kcal Electronic energy + Delta-G solvation = -26773.499914 eV Core-core repulsion = 23174.852614 eV Total energy + Delta-G solvation = -3598.647299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49349 -38.99384 -36.83412 -36.05825 -33.65576 -32.06970 -31.57777 -29.76774 -29.62052 -28.52814 -26.75455 -24.26872 -23.78150 -22.36834 -21.52127 -21.12312 -19.94241 -19.47192 -18.43084 -17.50107 -16.96464 -16.05834 -15.86797 -15.54269 -15.24164 -14.87303 -14.74569 -14.44651 -14.05334 -13.88140 -13.36510 -13.24534 -13.06645 -12.77831 -12.74767 -12.44643 -12.19045 -12.09892 -12.04551 -11.80157 -11.69153 -11.46787 -11.26862 -11.05015 -10.98080 -10.76494 -10.67176 -10.18701 -10.01492 -9.73641 -9.47617 -8.98099 -8.82950 -8.81565 -8.55096 -8.51697 -8.46284 -8.27769 -6.10463 -4.01065 0.73262 1.37942 1.74980 2.44408 2.98874 3.29169 3.32977 3.36711 3.39091 3.96941 4.37886 4.39514 4.55826 4.66104 4.80666 4.92526 5.03806 5.10983 5.17930 5.26594 5.29790 5.35120 5.44223 5.54453 5.62786 5.67094 5.75356 5.89769 5.90618 6.05096 6.21546 6.28292 6.48820 6.50764 6.71052 6.73727 6.80664 6.81536 6.90557 6.97691 7.08167 7.27000 7.44074 7.64648 7.71459 7.78106 7.98537 8.38075 8.64219 8.95881 9.54783 10.99265 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002602 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.283628 B =10758.111194 C =11376.943797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.490 4.490 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.157 3.843 11 H 0.077 0.923 12 N -0.726 5.726 13 C 0.509 3.491 14 O -0.527 6.527 15 C 0.030 3.970 16 N -0.507 5.507 17 C 0.059 3.941 18 C -0.085 4.085 19 C -0.188 4.188 20 S 0.090 5.910 21 C -0.213 4.213 22 C -0.121 4.121 23 C -0.136 4.136 24 C 0.113 3.887 25 C -0.113 4.113 26 C -0.009 4.009 27 H 0.265 0.735 28 H 0.006 0.994 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.050 0.950 44 H 0.037 0.963 45 H 0.020 0.980 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.819 -20.238 9.936 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.509 4.509 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.054 3.946 11 H 0.095 0.905 12 N -0.377 5.377 13 C 0.294 3.706 14 O -0.403 6.403 15 C -0.101 4.101 16 N -0.228 5.228 17 C -0.070 4.070 18 C -0.126 4.126 19 C -0.305 4.305 20 S 0.355 5.645 21 C -0.349 4.349 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.017 4.017 25 C -0.152 4.152 26 C -0.047 4.047 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.182 0.818 40 H 0.158 0.842 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.023 -20.507 10.272 25.447 hybrid contribution -0.223 0.882 -0.383 0.988 sum 10.800 -19.624 9.889 24.486 Atomic orbital electron populations 1.69815 1.06138 1.27068 1.49874 1.24828 0.94723 0.98553 0.94505 0.86654 0.79378 0.82955 0.79080 1.19960 1.21904 1.19997 1.20049 0.89364 0.91487 1.49960 1.19333 0.98667 0.92766 0.91675 1.21929 0.92481 0.98522 1.02313 1.21005 0.94317 0.88903 0.90383 0.90482 1.46407 1.23781 1.46094 1.21415 1.20351 0.81041 0.80940 0.88289 1.90679 1.57600 1.64363 1.27627 1.22068 0.93373 0.97119 0.97552 1.62108 1.23857 1.27364 1.09470 1.22399 0.95745 0.95831 0.93066 1.20994 0.97799 0.97975 0.95813 1.24727 1.06136 1.01688 0.97998 1.84070 1.45330 1.26741 1.08318 1.25406 1.08094 1.05170 0.96200 1.20019 0.98417 0.95149 1.01536 1.20599 1.01126 1.00406 0.92866 1.21385 0.98978 0.87655 0.93680 1.21883 0.97377 0.95235 1.00663 1.19585 0.96529 0.94555 0.94005 0.92532 0.97579 0.92122 0.94720 0.92765 0.77505 0.91707 0.88016 0.89402 0.89851 0.89972 0.89838 0.81841 0.84235 0.89053 0.87831 0.93113 0.94384 0.96150 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.73 55.43 0.71 -24.77 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.43 26.80 -169.99 -4.56 16.87 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -12.88 5.51 -98.92 -0.55 -13.42 16 8 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16 9 C -0.11 -2.31 5.40 -26.63 -0.14 -2.45 16 10 C 0.16 3.05 2.35 -67.97 -0.16 2.89 16 11 H 0.08 1.67 7.57 -51.93 -0.39 1.27 16 12 N -0.73 -11.27 5.07 -53.85 -0.27 -11.55 16 13 C 0.51 7.93 7.25 -10.98 -0.08 7.85 16 14 O -0.53 -10.23 14.44 5.56 0.08 -10.15 16 15 C 0.03 0.34 4.44 -4.97 -0.02 0.32 16 16 N -0.51 -5.80 4.66 -235.93 -1.10 -6.90 16 17 C 0.06 0.49 5.99 -3.40 -0.02 0.47 16 18 C -0.09 -0.65 5.71 -27.35 -0.16 -0.81 16 19 C -0.19 -1.83 5.63 -35.18 -0.20 -2.03 16 20 S 0.09 0.81 23.32 -107.50 -2.51 -1.70 16 21 C -0.21 -1.97 11.21 28.92 0.32 -1.65 16 22 C -0.12 -1.24 10.02 -41.10 -0.41 -1.66 16 23 C -0.14 -1.47 5.23 -104.78 -0.55 -2.02 16 24 C 0.11 1.33 5.66 -4.20 -0.02 1.31 16 25 C -0.11 -2.38 5.50 -26.65 -0.15 -2.52 16 26 C -0.01 -0.21 5.59 -27.50 -0.15 -0.36 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.39 4.97 8.60 -40.82 -0.35 4.62 16 33 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 34 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 37 H 0.08 0.59 7.23 -51.93 -0.38 0.21 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 1.47 6.05 -51.92 -0.31 1.16 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -30.70 366.76 -11.67 -42.37 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.00 Total: 2.22 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.55 Total: -11.93 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.67 Total: -43.22 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.56 Total: 16.87 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.70 -11.67 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142223743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.783 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds