Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47017 * 239.99862 * 3 2 1 5 5 H 1.48498 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47212 * 119.99957 * 3 2 1 7 7 C 1.37872 * 120.00658 * 180.02562 * 2 1 3 8 8 C 1.51276 * 120.84597 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53349 * 231.32600 * 8 7 2 10 10 C 1.52959 * 109.40468 * 305.37215 * 9 8 7 11 11 H 1.08998 * 109.41279 * 303.56220 * 10 9 8 12 12 N 1.46499 * 109.41080 * 183.70792 * 10 9 8 13 13 C 1.34783 * 119.99922 * 154.86218 * 12 10 9 14 14 O 1.21278 * 119.99745 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99831 * 179.97438 * 13 12 10 16 16 N 1.46906 * 109.47029 * 173.78977 * 15 13 12 17 17 C 1.47340 * 110.99860 * 169.52823 * 16 15 13 18 18 C 1.53357 * 109.17143 * 52.22282 * 17 16 15 19 19 C 1.51416 * 108.07229 * 48.84977 * 18 17 16 20 20 S 1.75588 * 125.99673 * 164.43844 * 19 18 17 21 21 C 1.75781 * 91.04388 * 180.09123 * 20 19 18 22 22 C 1.33021 * 109.60550 * 359.97438 * 21 20 19 23 23 C 1.34798 * 123.95831 * 344.49787 * 19 18 17 24 24 C 1.46903 * 111.00091 * 293.60337 * 16 15 13 25 25 C 1.52961 * 109.76147 * 63.63553 * 10 9 8 26 26 C 1.51272 * 120.85400 * 179.97438 * 7 2 1 27 27 H 0.96990 * 120.00329 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.62819 * 111.61380 * 8 7 2 29 29 H 1.08991 * 109.62869 * 351.03903 * 8 7 2 30 30 H 1.08997 * 109.47833 * 185.39380 * 9 8 7 31 31 H 1.08997 * 109.49385 * 65.36140 * 9 8 7 32 32 H 0.96996 * 120.00000 * 334.85533 * 12 10 9 33 33 H 1.09001 * 109.47177 * 53.79043 * 15 13 12 34 34 H 1.08999 * 109.47146 * 293.78562 * 15 13 12 35 35 H 1.09006 * 109.47538 * 292.33315 * 17 16 15 36 36 H 1.09006 * 109.52723 * 172.14503 * 17 16 15 37 37 H 1.09000 * 109.74007 * 289.20948 * 18 17 16 38 38 H 1.08992 * 109.74559 * 168.49712 * 18 17 16 39 39 H 1.08004 * 125.20501 * 179.97438 * 21 20 19 40 40 H 1.08001 * 122.16983 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.60979 * 168.74896 * 24 16 15 42 42 H 1.09007 * 109.60923 * 48.40876 * 24 16 15 43 43 H 1.09004 * 109.47855 * 56.34670 * 25 10 9 44 44 H 1.08998 * 109.48109 * 176.38730 * 25 10 9 45 45 H 1.09004 * 109.62219 * 248.38846 * 26 7 2 46 46 H 1.08995 * 109.62542 * 8.76727 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8239 -3.3830 1.1333 10 6 3.3409 -3.5072 0.9810 11 1 3.5742 -3.9109 -0.0042 12 7 3.8615 -4.4082 2.0122 13 6 5.0176 -5.0702 1.8074 14 8 5.6264 -4.9204 0.7693 15 6 5.5535 -5.9966 2.8684 16 7 6.7326 -6.7037 2.3510 17 6 7.4300 -7.4265 3.4290 18 6 6.4229 -8.3078 4.1780 19 6 5.6310 -9.0916 3.1527 20 16 4.6368 -10.5025 3.4752 21 6 4.2077 -10.6286 1.7752 22 6 4.8024 -9.6548 1.0914 23 6 5.5958 -8.7921 1.8389 24 6 6.3635 -7.6127 1.2576 25 6 3.9904 -2.1308 1.1333 26 6 3.5172 -1.2163 -0.0011 27 1 -0.4850 0.8399 -0.0004 28 1 1.4194 -3.0189 -0.9552 29 1 0.2039 -2.3410 0.1598 30 1 1.3717 -4.3737 1.0881 31 1 1.5915 -2.9207 2.0927 32 1 3.3744 -4.5282 2.8424 33 1 4.7855 -6.7209 3.1399 34 1 5.8342 -5.4176 3.7482 35 1 7.8718 -6.7093 4.1208 36 1 8.2136 -8.0517 3.0008 37 1 5.7494 -7.6815 4.7631 38 1 6.9535 -8.9947 4.8371 39 1 3.5602 -11.3815 1.3506 40 1 4.6772 -9.5420 0.0246 41 1 7.2646 -7.9719 0.7606 42 1 5.7352 -7.0854 0.5397 43 1 3.7056 -1.6986 2.0927 44 1 5.0746 -2.2334 1.0881 45 1 3.8772 -1.5996 -0.9559 46 1 3.8983 -0.2072 0.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142223743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = -28.061855 kcal Electronic energy + Delta-G solvation = -26774.344420 eV Core-core repulsion = 23174.852614 eV Total energy + Delta-G solvation = -3599.491805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44483 -40.17572 -38.37604 -36.93991 -35.32115 -33.45910 -32.72828 -31.49990 -30.57822 -29.73087 -28.20538 -25.14328 -24.49495 -23.99401 -23.30864 -22.13753 -21.28841 -21.01789 -19.29066 -18.35649 -18.14889 -17.68744 -17.03817 -16.66958 -16.40881 -16.17988 -15.71805 -15.59385 -15.25174 -14.96544 -14.72249 -14.52456 -14.27346 -14.12733 -13.95506 -13.87933 -13.60686 -13.41743 -13.13834 -12.80624 -12.77311 -12.65819 -12.62172 -12.54434 -12.29150 -12.00399 -11.92039 -11.80818 -11.76374 -11.58577 -11.03143 -10.74304 -10.59699 -10.51234 -9.84248 -9.51614 -9.32031 -9.24895 -8.18429 -6.12374 0.01357 0.68835 1.03059 1.38852 1.40735 1.48287 1.67857 1.77734 2.19281 2.40126 3.03241 3.11692 3.71489 3.83026 3.87817 4.01385 4.09130 4.18233 4.21372 4.31515 4.36422 4.44121 4.50425 4.54970 4.61103 4.70785 4.80800 4.83884 4.86273 4.89381 4.95776 5.03601 5.06983 5.14122 5.17180 5.20937 5.24598 5.32095 5.52284 5.54741 5.59133 5.72220 5.75512 5.82147 5.93774 6.04388 6.34068 6.75201 6.92897 7.43020 7.46037 8.92334 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002602 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.283628 B =10758.111194 C =11376.943797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.501 4.501 8 C 0.009 3.991 9 C -0.100 4.100 10 C 0.170 3.830 11 H 0.052 0.948 12 N -0.717 5.717 13 C 0.506 3.494 14 O -0.569 6.569 15 C 0.043 3.957 16 N -0.525 5.525 17 C 0.061 3.939 18 C -0.083 4.083 19 C -0.190 4.190 20 S 0.110 5.890 21 C -0.218 4.218 22 C -0.141 4.141 23 C -0.154 4.154 24 C 0.120 3.880 25 C -0.104 4.104 26 C -0.011 4.011 27 H 0.264 0.736 28 H -0.005 1.005 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.410 0.590 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.182 0.818 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.012 0.988 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -21.370 12.581 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.520 4.520 8 C -0.029 4.029 9 C -0.138 4.138 10 C 0.065 3.935 11 H 0.070 0.930 12 N -0.369 5.369 13 C 0.293 3.707 14 O -0.447 6.447 15 C -0.088 4.088 16 N -0.246 5.246 17 C -0.068 4.068 18 C -0.123 4.123 19 C -0.308 4.308 20 S 0.376 5.624 21 C -0.353 4.353 22 C -0.171 4.171 23 C -0.168 4.168 24 C -0.011 4.011 25 C -0.143 4.143 26 C -0.050 4.050 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.199 0.801 40 H 0.157 0.843 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.402 -21.663 12.954 28.123 hybrid contribution -0.645 1.136 -1.259 1.814 sum 11.756 -20.527 11.695 26.388 Atomic orbital electron populations 1.69933 1.07450 1.27609 1.51756 1.25529 0.95346 1.01509 0.94779 0.85853 0.78412 0.79680 0.79411 1.19755 1.21786 1.18834 1.20588 0.90787 0.92066 1.48571 1.19293 0.97300 0.93341 0.92961 1.21688 0.93009 0.98711 1.00421 1.20537 0.93591 0.88784 0.90557 0.92972 1.46134 1.24157 1.45361 1.21234 1.21139 0.80263 0.80688 0.88583 1.90669 1.58743 1.65656 1.29631 1.22006 0.93757 0.96610 0.96412 1.62091 1.23945 1.28069 1.10532 1.22491 0.95593 0.96234 0.92471 1.21086 0.97674 0.98141 0.95405 1.25064 1.05865 1.01839 0.98025 1.83990 1.44655 1.26041 1.07687 1.25691 1.07879 1.05113 0.96623 1.20156 0.99237 0.95886 1.01863 1.20536 1.02051 1.00609 0.93606 1.21143 0.98506 0.87888 0.93554 1.21749 0.97501 0.95488 0.99548 1.19598 0.95060 0.95432 0.94869 0.92666 0.98643 0.94768 0.92565 0.92336 0.75399 0.90575 0.85174 0.87469 0.89679 0.88776 0.87919 0.80092 0.84347 0.89146 0.91001 0.92531 0.94119 0.96955 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 12.73 21.45 0.27 -53.81 16 2 C 0.03 1.49 5.46 84.65 0.46 1.95 16 3 Si 0.94 43.88 26.80 68.60 1.84 45.71 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.50 -26.56 5.51 -16.17 -0.09 -26.65 16 8 C 0.01 0.45 5.97 30.11 0.18 0.63 16 9 C -0.10 -3.96 5.40 30.66 0.17 -3.80 16 10 C 0.17 6.46 2.35 44.96 0.11 6.57 16 11 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 12 N -0.72 -20.88 5.07 -442.66 -2.25 -23.13 16 13 C 0.51 15.04 7.25 87.65 0.64 15.68 16 14 O -0.57 -22.05 14.44 -3.02 -0.04 -22.09 16 15 C 0.04 0.87 4.44 85.55 0.38 1.25 16 16 N -0.53 -11.02 4.66 -900.34 -4.20 -15.22 16 17 C 0.06 0.82 5.99 86.34 0.52 1.33 16 18 C -0.08 -0.97 5.71 30.20 0.17 -0.79 16 19 C -0.19 -3.25 5.63 25.12 0.14 -3.10 16 20 S 0.11 1.72 23.32 -56.49 -1.32 0.41 16 21 C -0.22 -3.71 11.21 66.66 0.75 -2.96 16 22 C -0.14 -2.83 10.02 21.29 0.21 -2.62 16 23 C -0.15 -3.17 5.23 -19.97 -0.10 -3.28 16 24 C 0.12 2.78 5.66 86.06 0.49 3.27 16 25 C -0.10 -4.27 5.50 30.65 0.17 -4.10 16 26 C -0.01 -0.54 5.59 30.10 0.17 -0.37 16 27 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.03 1.86 7.07 -2.39 -0.02 1.85 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.41 9.15 8.60 -92.71 -0.80 8.36 16 33 H 0.08 1.40 5.95 -2.39 -0.01 1.39 16 34 H 0.13 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.12 8.06 -2.38 -0.02 1.11 16 37 H 0.09 0.93 7.23 -2.39 -0.02 0.91 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.12 6.05 -2.38 -0.01 2.10 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.03 1.24 5.17 -2.39 -0.01 1.23 16 Total: -1.00 -67.47 366.76 -1.14 -68.61 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.20 Total: 16.52 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.35 Total: -17.00 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -6.17 Total: -92.16 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.84 Total: 45.71 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.41 kcal Total: -67.47 -1.14 -68.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142223743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.548 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds