Wall clock time and date at job start Tue Mar 31 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42101 * 108.57564 * 2 1 4 4 O 1.42097 * 108.57574 * 131.02576 * 2 1 3 5 5 C 1.81401 * 101.92136 * 245.51455 * 2 1 3 6 6 C 1.52995 * 109.47043 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47046 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00213 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99966 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47062 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.41130 * 305.00294 * 11 10 9 13 13 C 1.54292 * 109.40584 * 185.16099 * 11 10 9 14 14 N 1.48177 * 110.69496 * 200.49477 * 13 11 10 15 15 C 1.36942 * 118.51585 * 138.77845 * 14 13 11 16 16 H 1.07994 * 119.99896 * 206.12828 * 15 14 13 17 17 C 1.38809 * 119.99924 * 26.11387 * 15 14 13 18 18 N 1.31622 * 120.00028 * 15.52145 * 17 15 14 19 19 Si 1.86803 * 120.00308 * 195.51334 * 17 15 14 20 20 H 1.48494 * 109.46875 * 90.00444 * 19 17 15 21 21 H 1.48497 * 109.47148 * 210.00788 * 19 17 15 22 22 H 1.48505 * 109.46780 * 330.00550 * 19 17 15 23 23 C 1.44463 * 122.97557 * 318.79600 * 14 13 11 24 24 C 1.54869 * 109.32756 * 88.91489 * 23 14 13 25 25 C 1.47695 * 109.67763 * 290.10417 * 24 23 14 26 26 O 1.40534 * 109.40474 * 64.84026 * 11 10 9 27 27 H 1.09004 * 109.47001 * 54.48409 * 1 2 3 28 28 H 1.08996 * 109.46887 * 174.48526 * 1 2 3 29 29 H 1.09002 * 109.47070 * 294.48729 * 1 2 3 30 30 H 1.08994 * 109.46837 * 300.00136 * 5 2 1 31 31 H 1.09006 * 109.47288 * 59.99607 * 5 2 1 32 32 H 1.08994 * 109.47724 * 299.99972 * 6 5 2 33 33 H 1.09000 * 109.47307 * 60.00235 * 6 5 2 34 34 H 0.96998 * 119.99970 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47447 * 300.00384 * 10 9 7 36 36 H 1.09007 * 109.47103 * 60.00477 * 10 9 7 37 37 H 1.08999 * 109.23501 * 320.80883 * 13 11 10 38 38 H 1.09002 * 109.22957 * 80.22346 * 13 11 10 39 39 H 0.96999 * 119.99840 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.49469 * 208.87451 * 23 14 13 41 41 H 1.09003 * 109.48898 * 328.95758 * 23 14 13 42 42 H 1.08995 * 109.44083 * 50.16616 * 24 23 14 43 43 H 1.08996 * 109.44019 * 170.04518 * 24 23 14 44 44 H 1.09002 * 108.64789 * 181.88660 * 25 24 23 45 45 H 1.09001 * 108.64077 * 299.72039 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6153 6 6 3.7055 -0.8183 -1.7984 7 6 4.0168 -1.4301 -3.1401 8 8 3.1144 -1.7663 -3.8774 9 7 5.2980 -1.6035 -3.5207 10 6 5.6007 -2.1976 -4.8251 11 6 7.1173 -2.2805 -5.0083 12 1 7.5537 -1.2913 -4.8687 13 6 7.4351 -2.7848 -6.4314 14 7 8.8079 -3.3388 -6.4963 15 6 9.0159 -4.4883 -7.2109 16 1 9.8397 -5.1394 -6.9585 17 6 8.1676 -4.8167 -8.2594 18 7 7.3652 -3.9052 -8.7670 19 14 8.1650 -6.5523 -8.9503 20 1 7.1711 -7.3758 -8.2160 21 1 7.8065 -6.5112 -10.3907 22 1 9.5156 -7.1496 -8.7932 23 6 9.9368 -2.7214 -5.8395 24 6 10.0574 -3.2755 -4.3984 25 6 8.9377 -2.7726 -3.5769 26 8 7.6547 -3.1659 -4.0584 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3633 -1.0229 -0.0988 29 1 -0.3633 0.4260 0.9352 30 1 1.7611 -1.7368 -1.6665 31 1 1.7610 -0.1170 -2.4043 32 1 4.1328 0.1830 -1.7474 33 1 4.1336 -1.4367 -1.0095 34 1 6.0198 -1.3343 -2.9312 35 1 5.1729 -3.1988 -4.8765 36 1 5.1731 -1.5789 -5.6142 37 1 6.7211 -3.5617 -6.7048 38 1 7.3496 -1.9555 -7.1336 39 1 6.7727 -4.1347 -9.5000 40 1 10.8480 -2.9471 -6.3935 41 1 9.7906 -1.6418 -5.8032 42 1 10.0270 -4.3647 -4.4248 43 1 11.0018 -2.9501 -3.9624 44 1 9.0573 -3.1448 -2.5594 45 1 8.9840 -1.6838 -3.5541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149904011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:42 Heat of formation + Delta-G solvation = -124.644589 kcal Electronic energy + Delta-G solvation = -27265.776426 eV Core-core repulsion = 23218.954464 eV Total energy + Delta-G solvation = -4046.821961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.84607 -38.76230 -37.35588 -36.41566 -35.23800 -34.69664 -33.48483 -32.56120 -31.10159 -30.07582 -28.87013 -26.28387 -25.39978 -24.45424 -22.48287 -21.02172 -20.38112 -19.65130 -19.25923 -17.77384 -17.04688 -16.73903 -16.47406 -16.30613 -16.19338 -15.80625 -15.62353 -14.98560 -14.83847 -14.15025 -14.02146 -13.79438 -13.64157 -13.57387 -13.31419 -12.92116 -12.88575 -12.54695 -12.46744 -12.41642 -12.36444 -12.30549 -11.89439 -11.71889 -11.48405 -11.17041 -11.01792 -10.88048 -10.75622 -10.61607 -10.23353 -10.06997 -10.01138 -9.84469 -9.67984 -8.98968 -8.88166 -8.42185 -6.71909 -5.79687 -3.22609 -0.44668 2.30871 2.58987 3.01749 3.36454 3.39846 3.46284 3.46608 3.61212 4.07423 4.24117 4.31641 4.35163 4.49798 4.57954 4.67230 5.05082 5.11154 5.15319 5.20365 5.36509 5.41931 5.42800 5.49694 5.60739 5.70573 5.88105 5.96730 6.07181 6.20006 6.26914 6.35501 6.44080 6.56825 6.74666 6.95163 7.14852 7.50132 7.54893 7.80560 7.93222 8.19652 8.44748 9.20179 9.86763 10.30624 11.28338 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002355 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.001398 B =11887.094098 C =12711.012283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.940 6.940 4 O -0.939 6.939 5 C -0.594 4.594 6 C -0.135 4.135 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.719 5.719 10 C 0.124 3.876 11 C 0.055 3.945 12 H 0.048 0.952 13 C 0.166 3.834 14 N -0.586 5.586 15 C -0.254 4.254 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.907 5.907 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.157 3.843 24 C -0.184 4.184 25 C 0.078 3.922 26 O -0.360 6.360 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.254 0.746 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 9.731 16.835 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.723 4.723 6 C -0.176 4.176 7 C 0.301 3.699 8 O -0.418 6.418 9 N -0.370 5.370 10 C 0.000 4.000 11 C -0.005 4.005 12 H 0.066 0.934 13 C 0.040 3.960 14 N -0.307 5.307 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.551 5.551 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.029 3.971 24 C -0.224 4.224 25 C 0.001 3.999 26 O -0.278 6.278 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.969 9.623 16.851 21.816 hybrid contribution -0.152 -0.926 -0.837 1.258 sum -10.121 8.697 16.014 20.845 Atomic orbital electron populations 1.30243 1.26554 1.11809 1.11826 1.07789 0.78464 0.75763 0.77558 1.93608 1.79085 1.34497 1.86513 1.93612 1.79055 1.66972 1.53985 1.30132 1.04009 1.15260 1.22906 1.21352 0.93446 1.04480 0.98290 1.20170 0.82974 0.78898 0.87808 1.90712 1.45573 1.50759 1.54710 1.45991 1.07178 1.63243 1.20604 1.21621 0.95236 0.99441 0.83684 1.23186 0.91240 0.92491 0.93632 0.93399 1.21628 0.87462 0.98762 0.88172 1.43580 1.01359 1.28165 1.57562 1.19187 1.13422 0.97630 1.08147 0.91731 1.25006 1.00184 0.97859 0.96374 1.70025 1.27322 1.31490 1.26285 0.86286 0.77867 0.84706 0.77872 1.21406 1.21794 1.20510 1.20673 0.91635 0.94175 0.90649 1.22298 0.96888 1.03108 1.00138 1.21311 0.84599 0.97378 0.96570 1.87450 1.31672 1.50482 1.58216 0.85181 0.85168 0.85231 0.84120 0.84150 0.87229 0.87146 0.76563 0.90341 0.90040 0.89794 0.94506 0.93592 0.93104 0.95355 0.91123 0.92336 0.91501 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.04 10.62 101.05 1.07 -0.97 16 2 S 2.42 15.08 5.36 -107.50 -0.58 14.50 16 3 O -0.94 -9.21 18.10 -57.83 -1.05 -10.26 16 4 O -0.94 -9.38 18.10 -57.83 -1.05 -10.43 16 5 C -0.59 -3.95 5.09 37.15 0.19 -3.77 16 6 C -0.13 -1.15 5.71 -27.88 -0.16 -1.31 16 7 C 0.52 6.68 7.83 -10.98 -0.09 6.60 16 8 O -0.54 -8.96 15.98 5.56 0.09 -8.87 16 9 N -0.72 -9.33 5.49 -60.30 -0.33 -9.66 16 10 C 0.12 2.02 5.24 -4.05 -0.02 2.00 16 11 C 0.05 0.97 2.35 -26.06 -0.06 0.91 16 12 H 0.05 0.77 7.20 -51.93 -0.37 0.39 16 13 C 0.17 3.80 4.50 -2.44 -0.01 3.79 16 14 N -0.59 -14.19 2.59 -171.49 -0.44 -14.64 16 15 C -0.25 -6.87 9.43 -15.06 -0.14 -7.01 16 16 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.11 4.88 -17.43 -0.09 0.03 16 18 N -0.91 -25.82 10.98 55.49 0.61 -25.21 16 19 Si 0.90 21.83 29.58 -169.99 -5.03 16.81 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.16 3.14 5.68 -4.14 -0.02 3.12 16 24 C -0.18 -3.10 6.03 -28.31 -0.17 -3.27 16 25 C 0.08 1.20 6.04 34.59 0.21 1.41 16 26 O -0.36 -6.59 9.77 -34.11 -0.33 -6.92 16 27 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 28 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.14 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.14 0.80 8.10 -51.92 -0.42 0.38 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.20 8.46 -40.82 -0.35 3.85 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 2.19 6.24 -51.93 -0.32 1.87 16 38 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 41 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.47 7.27 -51.93 -0.38 0.09 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -37.85 377.73 -8.99 -46.84 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.29 Total: 0.63 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.71 Total: 1.51 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.17 Total: -49.50 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -2.34 Total: -36.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -0.58 Total: 14.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.85 -8.99 -46.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149904011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.806 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds