Wall clock time and date at job start Tue Mar 31 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42101 * 108.57564 * 2 1 4 4 O 1.42097 * 108.57574 * 131.02576 * 2 1 3 5 5 C 1.81401 * 101.92136 * 245.51455 * 2 1 3 6 6 C 1.52995 * 109.47043 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47046 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00213 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99966 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47062 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.41130 * 305.00294 * 11 10 9 13 13 C 1.54292 * 109.40584 * 185.16099 * 11 10 9 14 14 N 1.48177 * 110.69496 * 200.49477 * 13 11 10 15 15 C 1.36942 * 118.51585 * 138.77845 * 14 13 11 16 16 H 1.07994 * 119.99896 * 206.12828 * 15 14 13 17 17 C 1.38809 * 119.99924 * 26.11387 * 15 14 13 18 18 N 1.31622 * 120.00028 * 15.52145 * 17 15 14 19 19 Si 1.86803 * 120.00308 * 195.51334 * 17 15 14 20 20 H 1.48494 * 109.46875 * 90.00444 * 19 17 15 21 21 H 1.48497 * 109.47148 * 210.00788 * 19 17 15 22 22 H 1.48505 * 109.46780 * 330.00550 * 19 17 15 23 23 C 1.44463 * 122.97557 * 318.79600 * 14 13 11 24 24 C 1.54869 * 109.32756 * 88.91489 * 23 14 13 25 25 C 1.47695 * 109.67763 * 290.10417 * 24 23 14 26 26 O 1.40534 * 109.40474 * 64.84026 * 11 10 9 27 27 H 1.09004 * 109.47001 * 54.48409 * 1 2 3 28 28 H 1.08996 * 109.46887 * 174.48526 * 1 2 3 29 29 H 1.09002 * 109.47070 * 294.48729 * 1 2 3 30 30 H 1.08994 * 109.46837 * 300.00136 * 5 2 1 31 31 H 1.09006 * 109.47288 * 59.99607 * 5 2 1 32 32 H 1.08994 * 109.47724 * 299.99972 * 6 5 2 33 33 H 1.09000 * 109.47307 * 60.00235 * 6 5 2 34 34 H 0.96998 * 119.99970 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47447 * 300.00384 * 10 9 7 36 36 H 1.09007 * 109.47103 * 60.00477 * 10 9 7 37 37 H 1.08999 * 109.23501 * 320.80883 * 13 11 10 38 38 H 1.09002 * 109.22957 * 80.22346 * 13 11 10 39 39 H 0.96999 * 119.99840 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.49469 * 208.87451 * 23 14 13 41 41 H 1.09003 * 109.48898 * 328.95758 * 23 14 13 42 42 H 1.08995 * 109.44083 * 50.16616 * 24 23 14 43 43 H 1.08996 * 109.44019 * 170.04518 * 24 23 14 44 44 H 1.09002 * 108.64789 * 181.88660 * 25 24 23 45 45 H 1.09001 * 108.64077 * 299.72039 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6153 6 6 3.7055 -0.8183 -1.7984 7 6 4.0168 -1.4301 -3.1401 8 8 3.1144 -1.7663 -3.8774 9 7 5.2980 -1.6035 -3.5207 10 6 5.6007 -2.1976 -4.8251 11 6 7.1173 -2.2805 -5.0083 12 1 7.5537 -1.2913 -4.8687 13 6 7.4351 -2.7848 -6.4314 14 7 8.8079 -3.3388 -6.4963 15 6 9.0159 -4.4883 -7.2109 16 1 9.8397 -5.1394 -6.9585 17 6 8.1676 -4.8167 -8.2594 18 7 7.3652 -3.9052 -8.7670 19 14 8.1650 -6.5523 -8.9503 20 1 7.1711 -7.3758 -8.2160 21 1 7.8065 -6.5112 -10.3907 22 1 9.5156 -7.1496 -8.7932 23 6 9.9368 -2.7214 -5.8395 24 6 10.0574 -3.2755 -4.3984 25 6 8.9377 -2.7726 -3.5769 26 8 7.6547 -3.1659 -4.0584 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3633 -1.0229 -0.0988 29 1 -0.3633 0.4260 0.9352 30 1 1.7611 -1.7368 -1.6665 31 1 1.7610 -0.1170 -2.4043 32 1 4.1328 0.1830 -1.7474 33 1 4.1336 -1.4367 -1.0095 34 1 6.0198 -1.3343 -2.9312 35 1 5.1729 -3.1988 -4.8765 36 1 5.1731 -1.5789 -5.6142 37 1 6.7211 -3.5617 -6.7048 38 1 7.3496 -1.9555 -7.1336 39 1 6.7727 -4.1347 -9.5000 40 1 10.8480 -2.9471 -6.3935 41 1 9.7906 -1.6418 -5.8032 42 1 10.0270 -4.3647 -4.4248 43 1 11.0018 -2.9501 -3.9624 44 1 9.0573 -3.1448 -2.5594 45 1 8.9840 -1.6838 -3.5541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149904011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:40 Heat of formation + Delta-G solvation = -155.786844 kcal Electronic energy + Delta-G solvation = -27267.126855 eV Core-core repulsion = 23218.954464 eV Total energy + Delta-G solvation = -4048.172391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00658 -40.13523 -37.97165 -37.03553 -36.90413 -36.03736 -34.30259 -34.00600 -32.86236 -30.49068 -30.26223 -27.63810 -27.05886 -25.65169 -23.94880 -22.38614 -21.65557 -21.14599 -19.78283 -18.88323 -18.55025 -17.79034 -17.39844 -17.27719 -17.07392 -16.89009 -16.53796 -16.40317 -16.20105 -15.72778 -15.36070 -14.93884 -14.63057 -14.43839 -14.21168 -13.97596 -13.89422 -13.87350 -13.76167 -13.44455 -13.29246 -13.09820 -13.02721 -13.00587 -12.77272 -12.44305 -12.42183 -12.31305 -12.02296 -11.99105 -11.81154 -11.58266 -11.45541 -11.36888 -11.00063 -10.56928 -10.26775 -10.15890 -8.68214 -7.86900 -5.31733 -0.91664 1.43161 1.46294 1.53302 1.57850 1.87830 2.09142 2.50536 2.77681 2.92064 3.16191 3.26656 3.44284 3.57718 3.84268 3.87910 4.04332 4.12849 4.15572 4.21435 4.26997 4.27691 4.42274 4.47541 4.57019 4.59791 4.63504 4.78692 4.86886 4.88631 4.91905 5.03123 5.14475 5.21595 5.26355 5.38553 5.51540 5.60970 5.70354 6.38962 6.50504 6.57353 7.16383 7.19442 7.92715 8.30005 9.17849 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002355 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.001398 B =11887.094098 C =12711.012283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.442 3.558 3 O -0.979 6.979 4 O -0.981 6.981 5 C -0.597 4.597 6 C -0.138 4.138 7 C 0.514 3.486 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.135 3.865 11 C 0.076 3.924 12 H 0.076 0.924 13 C 0.172 3.828 14 N -0.603 5.603 15 C -0.259 4.259 16 H 0.061 0.939 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.960 3.040 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.147 3.853 24 C -0.170 4.170 25 C 0.067 3.933 26 O -0.378 6.378 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.416 0.584 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.248 0.752 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 10.644 19.187 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.628 3.372 3 O -0.976 6.976 4 O -0.978 6.978 5 C -0.726 4.726 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.010 3.990 11 C 0.015 3.985 12 H 0.094 0.906 13 C 0.046 3.954 14 N -0.326 5.326 15 C -0.390 4.390 16 H 0.079 0.921 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.789 3.211 20 H -0.218 1.218 21 H -0.220 1.220 22 H -0.194 1.194 23 C 0.021 3.979 24 C -0.211 4.211 25 C -0.009 4.009 26 O -0.296 6.296 27 H 0.169 0.831 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.253 0.747 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.028 10.553 19.260 24.143 hybrid contribution -0.092 -1.187 -1.557 1.960 sum -10.120 9.367 17.703 22.440 Atomic orbital electron populations 1.30100 1.21855 1.13805 1.13478 1.07013 0.79865 0.74026 0.76334 1.93555 1.81042 1.36174 1.86831 1.93557 1.81061 1.67676 1.55486 1.30182 1.02923 1.16028 1.23478 1.21492 0.95179 1.05586 0.95573 1.20942 0.82114 0.77948 0.88919 1.90694 1.46656 1.52476 1.56316 1.45825 1.08124 1.62841 1.19475 1.21210 0.94180 0.98085 0.85490 1.22769 0.92090 0.93199 0.90402 0.90643 1.21386 0.86268 0.96462 0.91268 1.43831 1.02891 1.27891 1.57945 1.19443 1.12941 0.98608 1.07974 0.92105 1.25691 1.00561 1.00964 0.97255 1.70175 1.28165 1.32897 1.26789 0.85373 0.77997 0.80918 0.76819 1.21797 1.22028 1.19378 1.20916 0.89733 0.95128 0.92154 1.22148 0.99667 1.01127 0.98120 1.21590 0.82584 0.99390 0.97328 1.87454 1.33228 1.51234 1.57723 0.83085 0.83217 0.84082 0.83481 0.83177 0.84996 0.85458 0.74746 0.93271 0.90759 0.93930 0.97002 0.94250 0.94099 0.93582 0.93958 0.88541 0.88587 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.94 10.62 113.37 1.20 -0.74 16 2 S 2.44 26.24 5.36 -56.49 -0.30 25.94 16 3 O -0.98 -17.93 18.10 -127.37 -2.30 -20.23 16 4 O -0.98 -18.49 18.10 -127.37 -2.30 -20.79 16 5 C -0.60 -6.89 5.09 71.98 0.37 -6.52 16 6 C -0.14 -2.10 5.71 29.85 0.17 -1.93 16 7 C 0.51 12.78 7.83 87.66 0.69 13.46 16 8 O -0.58 -19.29 15.98 -3.03 -0.05 -19.34 16 9 N -0.71 -17.57 5.49 -463.06 -2.54 -20.11 16 10 C 0.14 4.47 5.24 86.38 0.45 4.93 16 11 C 0.08 2.63 2.35 31.03 0.07 2.71 16 12 H 0.08 2.23 7.20 -2.39 -0.02 2.21 16 13 C 0.17 8.15 4.50 86.49 0.39 8.54 16 14 N -0.60 -29.66 2.59 -696.47 -1.80 -31.46 16 15 C -0.26 -14.33 9.43 84.03 0.79 -13.53 16 16 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 17 C -0.05 -2.80 4.88 84.86 0.41 -2.39 16 18 N -0.93 -55.40 10.98 21.65 0.24 -55.17 16 19 Si 0.96 46.07 29.58 68.60 2.03 48.10 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.15 5.73 5.68 87.40 0.50 6.23 16 24 C -0.17 -5.32 6.03 29.57 0.18 -5.14 16 25 C 0.07 1.83 6.04 70.32 0.42 2.25 16 26 O -0.38 -13.23 9.77 -144.97 -1.42 -14.65 16 27 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.15 1.51 8.10 -2.39 -0.02 1.49 16 31 H 0.15 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.42 7.65 8.46 -92.71 -0.78 6.86 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.53 16 37 H 0.04 2.34 6.24 -2.39 -0.01 2.33 16 38 H 0.01 0.61 8.02 -2.39 -0.02 0.59 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 1.64 7.97 -2.39 -0.02 1.62 16 41 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.42 7.27 -2.39 -0.02 1.40 16 Total: -1.00 -85.68 377.73 -2.60 -88.28 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.20 Total: 11.55 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.65 Total: 7.87 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.11 Total: -106.74 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -6.07 Total: -75.01 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 26.24 SS G_CDS: -0.30 Total: 25.94 kcal Total: -85.68 -2.60 -88.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149904011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.505 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds