Wall clock time and date at job start Tue Mar 31 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47498 * 274.11379 * 3 2 1 5 5 H 1.48506 * 109.47085 * 34.11065 * 3 2 1 6 6 H 1.48495 * 109.47295 * 154.10929 * 3 2 1 7 7 C 1.38813 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00250 * 354.15921 * 7 2 1 9 9 N 1.36936 * 119.99709 * 173.88392 * 7 2 1 10 10 C 1.46497 * 120.00008 * 184.79106 * 9 7 2 11 11 C 1.52996 * 109.47227 * 175.04104 * 10 9 7 12 12 C 1.52994 * 115.55097 * 279.61862 * 11 10 9 13 13 C 1.53002 * 109.47352 * 294.51101 * 12 11 10 14 14 N 1.46501 * 109.47162 * 184.87242 * 13 12 11 15 15 C 1.34779 * 119.99993 * 184.88988 * 14 13 12 16 16 O 1.21707 * 119.99872 * 5.14715 * 15 14 13 17 17 C 1.46578 * 119.99992 * 185.14607 * 15 14 13 18 18 C 1.35873 * 125.41659 * 180.02562 * 17 15 14 19 19 C 1.39167 * 114.00053 * 179.97438 * 18 17 15 20 20 C 1.34362 * 114.00041 * 0.02562 * 19 18 17 21 21 S 1.71490 * 111.07618 * 359.71756 * 20 19 18 22 22 C 1.52367 * 110.39080 * 179.97438 * 20 19 18 23 23 C 1.54162 * 104.89728 * 342.44513 * 22 20 19 24 24 C 1.52822 * 136.18866 * 180.02562 * 19 18 17 25 25 C 1.53002 * 117.50143 * 133.91298 * 11 10 9 26 26 C 1.53002 * 60.00139 * 252.51123 * 25 11 10 27 27 H 0.97006 * 120.00004 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99917 * 4.78453 * 9 7 2 29 29 H 1.09007 * 109.46854 * 295.03996 * 10 9 7 30 30 H 1.09000 * 109.47183 * 55.03712 * 10 9 7 31 31 H 1.09001 * 109.47352 * 54.51478 * 12 11 10 32 32 H 1.09004 * 109.47430 * 174.51267 * 12 11 10 33 33 H 1.09000 * 109.47115 * 304.87100 * 13 12 11 34 34 H 1.08997 * 109.46672 * 64.87193 * 13 12 11 35 35 H 0.96995 * 120.00261 * 4.88593 * 14 13 12 36 36 H 1.08008 * 122.99788 * 359.97438 * 18 17 15 37 37 H 1.08999 * 110.35400 * 223.59299 * 22 20 19 38 38 H 1.08999 * 110.44908 * 101.34651 * 22 20 19 39 39 H 1.08997 * 110.96267 * 268.59075 * 23 22 20 40 40 H 1.09003 * 110.99329 * 144.87212 * 23 22 20 41 41 H 1.09001 * 110.33020 * 316.51377 * 24 19 18 42 42 H 1.09005 * 110.32929 * 78.63603 * 24 19 18 43 43 H 1.09003 * 117.49413 * 359.97438 * 25 11 10 44 44 H 1.08998 * 117.50522 * 145.01807 * 25 11 10 45 45 H 1.09000 * 117.49553 * 252.51366 * 26 25 11 46 46 H 1.08999 * 117.50194 * 107.48651 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4108 2.0966 -1.3964 5 1 1.4938 2.6260 0.7852 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2022 -0.0005 8 1 1.4744 -2.1351 0.0942 9 7 3.3737 -1.2055 -0.1269 10 6 4.0964 -2.4754 -0.2331 11 6 5.5795 -2.1985 -0.4871 12 6 5.9508 -1.8691 -1.9343 13 6 5.6981 -3.0930 -2.8170 14 7 6.1617 -2.8170 -4.1790 15 6 5.9512 -3.7187 -5.1583 16 8 5.2949 -4.7188 -4.9337 17 6 6.5125 -3.4949 -6.4937 18 6 6.3690 -4.3276 -7.5578 19 6 7.0017 -3.8820 -8.7145 20 6 7.6408 -2.7089 -8.5706 21 16 7.4703 -2.1055 -6.9744 22 6 8.3021 -2.3004 -9.8811 23 6 8.3561 -3.5940 -10.7179 24 6 7.1662 -4.3892 -10.1467 25 6 6.5971 -2.9842 0.3424 26 6 6.3673 -1.4975 0.6215 27 1 -0.4850 0.8401 -0.0004 28 1 3.8610 -0.3671 -0.1462 29 1 3.9852 -3.0355 0.6955 30 1 3.6886 -3.0575 -1.0595 31 1 5.3416 -1.0361 -2.2851 32 1 7.0047 -1.5955 -1.9858 33 1 6.2403 -3.9490 -2.4151 34 1 4.6310 -3.3143 -2.8342 35 1 6.6202 -1.9852 -4.3760 36 1 5.8136 -5.2527 -7.5101 37 1 9.3089 -1.9257 -9.6970 38 1 7.7041 -1.5444 -10.3899 39 1 9.2939 -4.1250 -10.5549 40 1 8.2103 -3.3804 -11.7768 41 1 7.3884 -5.4563 -10.1474 42 1 6.2637 -4.1905 -10.7248 43 1 6.2099 -3.6981 1.0695 44 1 7.5313 -3.2667 -0.1428 45 1 7.1503 -0.8019 0.3197 46 1 5.8289 -1.2336 1.5318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167988451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:58 Heat of formation + Delta-G solvation = 28.952889 kcal Electronic energy + Delta-G solvation = -25242.177514 eV Core-core repulsion = 21645.158054 eV Total energy + Delta-G solvation = -3597.019461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.11497 -39.40290 -38.35937 -35.07077 -34.62356 -33.98786 -31.08599 -30.57161 -28.94258 -28.27425 -26.30542 -24.52313 -22.94756 -22.49169 -22.00506 -21.64024 -20.62614 -19.21144 -18.68905 -18.11799 -17.36507 -16.47524 -16.09160 -15.94715 -15.63366 -15.03945 -14.84861 -14.51000 -14.39242 -14.03504 -13.67488 -13.35119 -13.27679 -12.97661 -12.75130 -12.61756 -12.35624 -12.22069 -12.14238 -12.09810 -11.69095 -11.65106 -11.36478 -11.26867 -11.22445 -11.19784 -10.92516 -10.71297 -10.23263 -10.08401 -9.86547 -9.63525 -9.46896 -9.19952 -8.91936 -8.83353 -8.65102 -7.18113 -5.74255 -3.08568 0.26007 1.03456 1.61025 2.04041 2.97607 3.07642 3.38318 3.41202 3.46148 3.93698 4.04049 4.08403 4.51217 4.55732 4.61454 4.79822 4.85265 4.95550 5.01856 5.03875 5.06492 5.16145 5.21801 5.29785 5.35599 5.42679 5.47770 5.54653 5.58013 5.63765 5.64531 5.69009 5.80836 5.88115 5.94271 6.03424 6.05814 6.10888 6.25084 6.31794 6.33645 6.37282 6.70382 6.75576 7.32367 8.04230 8.04530 8.45382 9.25423 9.97606 10.18969 11.44206 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002354 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.215868 B =11890.400159 C =12520.244648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.190 3.810 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.724 5.724 15 C 0.590 3.410 16 O -0.525 6.525 17 C -0.261 4.261 18 C -0.038 4.038 19 C -0.138 4.138 20 C -0.222 4.222 21 S 0.215 5.785 22 C -0.044 4.044 23 C -0.118 4.118 24 C -0.058 4.058 25 C -0.171 4.171 26 C -0.168 4.168 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.283 -5.511 -19.576 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.063 3.937 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.000 4.000 14 N -0.375 5.375 15 C 0.376 3.624 16 O -0.402 6.402 17 C -0.381 4.381 18 C -0.071 4.071 19 C -0.151 4.151 20 C -0.342 4.342 21 S 0.485 5.515 22 C -0.084 4.084 23 C -0.157 4.157 24 C -0.097 4.097 25 C -0.209 4.209 26 C -0.205 4.205 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.229 0.771 36 H 0.169 0.831 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 23.074 -4.998 -18.571 30.038 hybrid contribution 0.179 0.460 -0.734 0.884 sum 23.253 -4.538 -19.305 30.561 Atomic orbital electron populations 1.69726 1.05120 1.25725 1.57556 1.24667 0.95190 0.97198 1.02159 0.86537 0.79361 0.85136 0.77674 1.21231 1.21793 1.20181 1.19062 0.81110 0.94850 1.42172 0.89287 1.42663 1.04610 1.02266 1.90151 1.20201 0.85831 0.89260 0.98402 1.21636 0.94788 1.05170 0.91217 1.21247 1.01022 0.97661 0.92847 1.21465 1.01463 0.98059 0.79059 1.45884 1.60538 1.21208 1.09920 1.16857 0.79763 0.83387 0.82414 1.90858 1.39045 1.28456 1.81886 1.24264 1.12359 1.02338 0.99157 1.20230 0.97436 0.99960 0.89458 1.20393 1.01301 0.96637 0.96740 1.25651 1.06554 1.01154 1.00796 1.82773 1.47753 1.20388 1.00603 1.20876 1.00025 0.98543 0.88919 1.22286 0.98742 0.95203 0.99455 1.21006 0.98791 1.00256 0.89634 1.23011 0.99895 0.94795 1.03194 1.22954 1.02337 0.94738 1.00462 0.93134 0.80595 0.95724 0.94437 0.90223 0.91776 0.91270 0.89863 0.77056 0.83074 0.90471 0.89687 0.90594 0.89946 0.90547 0.90082 0.88663 0.89187 0.89311 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.26 27.76 -169.99 -4.72 17.54 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.50 6.50 56.52 0.37 -6.14 16 7 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.75 -17.91 5.37 -59.91 -0.32 -18.23 16 10 C 0.19 3.71 6.12 -4.05 -0.02 3.69 16 11 C -0.13 -1.90 1.53 -154.51 -0.24 -2.14 16 12 C -0.09 -1.18 5.22 -26.73 -0.14 -1.32 16 13 C 0.12 1.68 5.47 -4.04 -0.02 1.65 16 14 N -0.72 -9.10 5.54 -61.65 -0.34 -9.44 16 15 C 0.59 8.52 7.78 -12.90 -0.10 8.42 16 16 O -0.52 -9.50 16.81 5.18 0.09 -9.41 16 17 C -0.26 -3.12 6.41 -37.07 -0.24 -3.36 16 18 C -0.04 -0.43 9.99 -40.08 -0.40 -0.83 16 19 C -0.14 -1.29 6.49 -104.58 -0.68 -1.97 16 20 C -0.22 -1.92 7.10 -34.85 -0.25 -2.17 16 21 S 0.22 1.93 22.16 -107.50 -2.38 -0.45 16 22 C -0.04 -0.26 6.81 -26.45 -0.18 -0.44 16 23 C -0.12 -0.56 7.11 -25.55 -0.18 -0.75 16 24 C -0.06 -0.37 6.81 -26.25 -0.18 -0.55 16 25 C -0.17 -2.14 9.90 -26.73 -0.26 -2.40 16 26 C -0.17 -2.31 9.82 -26.73 -0.26 -2.58 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.36 8.39 5.48 -40.82 -0.22 8.17 16 29 H 0.02 0.50 7.95 -51.93 -0.41 0.08 16 30 H 0.04 0.76 6.72 -51.93 -0.35 0.41 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.37 6.92 -51.93 -0.36 1.02 16 35 H 0.40 3.98 7.60 -40.82 -0.31 3.67 16 36 H 0.15 1.68 8.05 -52.48 -0.42 1.26 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -34.53 389.64 -11.60 -46.13 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.16 Total: 8.82 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -3.41 Total: -11.84 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.11 Total: -56.65 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.72 Total: 17.54 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.53 -11.60 -46.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167988451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.082 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds