Wall clock time and date at job start Tue Mar 31 2020 18:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47498 * 274.11379 * 3 2 1 5 5 H 1.48506 * 109.47085 * 34.11065 * 3 2 1 6 6 H 1.48495 * 109.47295 * 154.10929 * 3 2 1 7 7 C 1.38813 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00250 * 354.15921 * 7 2 1 9 9 N 1.36936 * 119.99709 * 173.88392 * 7 2 1 10 10 C 1.46497 * 120.00008 * 184.79106 * 9 7 2 11 11 C 1.52996 * 109.47227 * 175.04104 * 10 9 7 12 12 C 1.52994 * 115.55097 * 279.61862 * 11 10 9 13 13 C 1.53002 * 109.47352 * 294.51101 * 12 11 10 14 14 N 1.46501 * 109.47162 * 184.87242 * 13 12 11 15 15 C 1.34779 * 119.99993 * 184.88988 * 14 13 12 16 16 O 1.21707 * 119.99872 * 5.14715 * 15 14 13 17 17 C 1.46578 * 119.99992 * 185.14607 * 15 14 13 18 18 C 1.35873 * 125.41659 * 180.02562 * 17 15 14 19 19 C 1.39167 * 114.00053 * 179.97438 * 18 17 15 20 20 C 1.34362 * 114.00041 * 0.02562 * 19 18 17 21 21 S 1.71490 * 111.07618 * 359.71756 * 20 19 18 22 22 C 1.52367 * 110.39080 * 179.97438 * 20 19 18 23 23 C 1.54162 * 104.89728 * 342.44513 * 22 20 19 24 24 C 1.52822 * 136.18866 * 180.02562 * 19 18 17 25 25 C 1.53002 * 117.50143 * 133.91298 * 11 10 9 26 26 C 1.53002 * 60.00139 * 252.51123 * 25 11 10 27 27 H 0.97006 * 120.00004 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99917 * 4.78453 * 9 7 2 29 29 H 1.09007 * 109.46854 * 295.03996 * 10 9 7 30 30 H 1.09000 * 109.47183 * 55.03712 * 10 9 7 31 31 H 1.09001 * 109.47352 * 54.51478 * 12 11 10 32 32 H 1.09004 * 109.47430 * 174.51267 * 12 11 10 33 33 H 1.09000 * 109.47115 * 304.87100 * 13 12 11 34 34 H 1.08997 * 109.46672 * 64.87193 * 13 12 11 35 35 H 0.96995 * 120.00261 * 4.88593 * 14 13 12 36 36 H 1.08008 * 122.99788 * 359.97438 * 18 17 15 37 37 H 1.08999 * 110.35400 * 223.59299 * 22 20 19 38 38 H 1.08999 * 110.44908 * 101.34651 * 22 20 19 39 39 H 1.08997 * 110.96267 * 268.59075 * 23 22 20 40 40 H 1.09003 * 110.99329 * 144.87212 * 23 22 20 41 41 H 1.09001 * 110.33020 * 316.51377 * 24 19 18 42 42 H 1.09005 * 110.32929 * 78.63603 * 24 19 18 43 43 H 1.09003 * 117.49413 * 359.97438 * 25 11 10 44 44 H 1.08998 * 117.50522 * 145.01807 * 25 11 10 45 45 H 1.09000 * 117.49553 * 252.51366 * 26 25 11 46 46 H 1.08999 * 117.50194 * 107.48651 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4108 2.0966 -1.3964 5 1 1.4938 2.6260 0.7852 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2022 -0.0005 8 1 1.4744 -2.1351 0.0942 9 7 3.3737 -1.2055 -0.1269 10 6 4.0964 -2.4754 -0.2331 11 6 5.5795 -2.1985 -0.4871 12 6 5.9508 -1.8691 -1.9343 13 6 5.6981 -3.0930 -2.8170 14 7 6.1617 -2.8170 -4.1790 15 6 5.9512 -3.7187 -5.1583 16 8 5.2949 -4.7188 -4.9337 17 6 6.5125 -3.4949 -6.4937 18 6 6.3690 -4.3276 -7.5578 19 6 7.0017 -3.8820 -8.7145 20 6 7.6408 -2.7089 -8.5706 21 16 7.4703 -2.1055 -6.9744 22 6 8.3021 -2.3004 -9.8811 23 6 8.3561 -3.5940 -10.7179 24 6 7.1662 -4.3892 -10.1467 25 6 6.5971 -2.9842 0.3424 26 6 6.3673 -1.4975 0.6215 27 1 -0.4850 0.8401 -0.0004 28 1 3.8610 -0.3671 -0.1462 29 1 3.9852 -3.0355 0.6955 30 1 3.6886 -3.0575 -1.0595 31 1 5.3416 -1.0361 -2.2851 32 1 7.0047 -1.5955 -1.9858 33 1 6.2403 -3.9490 -2.4151 34 1 4.6310 -3.3143 -2.8342 35 1 6.6202 -1.9852 -4.3760 36 1 5.8136 -5.2527 -7.5101 37 1 9.3089 -1.9257 -9.6970 38 1 7.7041 -1.5444 -10.3899 39 1 9.2939 -4.1250 -10.5549 40 1 8.2103 -3.3804 -11.7768 41 1 7.3884 -5.4563 -10.1474 42 1 6.2637 -4.1905 -10.7248 43 1 6.2099 -3.6981 1.0695 44 1 7.5313 -3.2667 -0.1428 45 1 7.1503 -0.8019 0.3197 46 1 5.8289 -1.2336 1.5318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167988451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:57 Heat of formation + Delta-G solvation = 7.044258 kcal Electronic energy + Delta-G solvation = -25243.127544 eV Core-core repulsion = 21645.158054 eV Total energy + Delta-G solvation = -3597.969490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06838 -40.21771 -39.55808 -36.30271 -35.81764 -35.36802 -33.21628 -31.64282 -29.50118 -29.00770 -28.07361 -25.47997 -24.32439 -23.83589 -22.94907 -22.62481 -21.53855 -20.47289 -19.78163 -19.26666 -18.82023 -17.33917 -17.00590 -16.89720 -16.57954 -16.53107 -16.23651 -15.79823 -15.42967 -15.28475 -14.99360 -14.85051 -14.36232 -13.89226 -13.80676 -13.71478 -13.58564 -13.36584 -13.16359 -12.99033 -12.86635 -12.73287 -12.54326 -12.29795 -12.20557 -12.06475 -11.99313 -11.93374 -11.80583 -11.72155 -11.31881 -11.13333 -10.90990 -10.67094 -10.31403 -9.68392 -9.34278 -9.29185 -8.04551 -5.37424 -0.56536 0.29256 0.85906 1.23217 1.35640 1.40167 1.48455 1.95002 2.04420 2.47480 2.81598 3.25432 3.43455 3.54979 3.72343 3.75795 3.78736 3.88561 3.99258 4.09442 4.14265 4.17747 4.34800 4.38669 4.40512 4.55842 4.62203 4.79461 4.79809 4.83847 4.87392 4.90092 4.94067 4.95957 5.07910 5.09370 5.15167 5.22249 5.22825 5.25199 5.33383 5.34809 5.34922 5.36368 5.73958 6.19715 6.31355 6.98666 7.07028 7.83024 8.05833 9.17305 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002354 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.215868 B =11890.400159 C =12520.244648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.237 4.237 8 H 0.049 0.951 9 N -0.749 5.749 10 C 0.187 3.813 11 C -0.146 4.146 12 C -0.078 4.078 13 C 0.128 3.872 14 N -0.713 5.713 15 C 0.586 3.414 16 O -0.576 6.576 17 C -0.297 4.297 18 C -0.045 4.045 19 C -0.158 4.158 20 C -0.219 4.219 21 S 0.258 5.742 22 C -0.046 4.046 23 C -0.111 4.111 24 C -0.060 4.060 25 C -0.148 4.148 26 C -0.163 4.163 27 H 0.258 0.742 28 H 0.368 0.632 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.684 -3.508 -21.130 35.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.368 4.368 8 H 0.067 0.933 9 N -0.395 5.395 10 C 0.061 3.939 11 C -0.147 4.147 12 C -0.116 4.116 13 C 0.005 3.995 14 N -0.364 5.364 15 C 0.374 3.626 16 O -0.457 6.457 17 C -0.417 4.417 18 C -0.080 4.080 19 C -0.170 4.170 20 C -0.339 4.339 21 S 0.528 5.472 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.099 4.099 25 C -0.185 4.185 26 C -0.200 4.200 27 H 0.067 0.933 28 H 0.202 0.798 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.246 0.754 36 H 0.157 0.843 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 27.543 -2.989 -20.121 34.241 hybrid contribution -1.227 -0.279 -0.282 1.290 sum 26.316 -3.268 -20.404 33.459 Atomic orbital electron populations 1.69924 1.07336 1.26768 1.59494 1.25587 0.96164 1.01597 1.02462 0.85325 0.78971 0.79121 0.78039 1.20366 1.22162 1.17008 1.19018 0.83361 0.93452 1.41006 0.93330 1.42600 1.02882 1.04153 1.89854 1.20270 0.89122 0.87263 0.97276 1.21431 0.91943 1.08350 0.92943 1.21166 1.02979 0.96297 0.91136 1.21309 0.99278 0.99016 0.79933 1.45754 1.59967 1.21472 1.09225 1.17261 0.79034 0.82794 0.83516 1.90818 1.41435 1.30522 1.82945 1.24107 1.14662 1.04784 0.98146 1.20378 0.97470 0.99661 0.90458 1.20656 1.01458 0.97348 0.97517 1.26233 1.05395 1.00612 1.01619 1.82488 1.46047 1.18056 1.00562 1.21080 1.00761 0.99406 0.87295 1.22324 0.98062 0.94220 1.00382 1.21132 0.99977 1.00868 0.87903 1.23110 0.99621 0.94138 1.01665 1.23031 1.02124 0.96177 0.98692 0.93319 0.79812 0.96428 0.96107 0.91769 0.87859 0.90642 0.93719 0.75353 0.84299 0.88857 0.88433 0.90031 0.87801 0.90152 0.89586 0.88931 0.86204 0.86539 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.01 13.97 21.65 0.30 -64.70 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.96 46.01 27.76 68.60 1.90 47.91 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.25 -10.47 6.50 99.48 0.65 -9.82 16 7 C -0.24 -14.12 10.47 84.03 0.88 -13.24 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 9 N -0.75 -35.96 5.37 -343.46 -1.84 -37.81 16 10 C 0.19 7.44 6.12 86.38 0.53 7.97 16 11 C -0.15 -4.10 1.53 -52.18 -0.08 -4.18 16 12 C -0.08 -1.89 5.22 30.59 0.16 -1.73 16 13 C 0.13 3.50 5.47 86.38 0.47 3.97 16 14 N -0.71 -17.68 5.54 -467.17 -2.59 -20.27 16 15 C 0.59 17.53 7.78 86.42 0.67 18.20 16 16 O -0.58 -22.26 16.81 -4.37 -0.07 -22.34 16 17 C -0.30 -7.18 6.41 23.90 0.15 -7.03 16 18 C -0.05 -1.06 9.99 21.94 0.22 -0.84 16 19 C -0.16 -2.80 6.49 -19.84 -0.13 -2.93 16 20 C -0.22 -3.31 7.10 25.34 0.18 -3.14 16 21 S 0.26 4.17 22.16 -56.49 -1.25 2.92 16 22 C -0.05 -0.38 6.81 30.78 0.21 -0.17 16 23 C -0.11 -0.70 7.11 31.36 0.22 -0.48 16 24 C -0.06 -0.66 6.81 30.91 0.21 -0.45 16 25 C -0.15 -3.23 9.90 30.60 0.30 -2.93 16 26 C -0.16 -3.95 9.82 30.60 0.30 -3.65 16 27 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 28 H 0.37 16.56 5.48 -92.71 -0.51 16.05 16 29 H 0.02 0.73 7.95 -2.38 -0.02 0.71 16 30 H 0.02 0.90 6.72 -2.39 -0.02 0.88 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.57 6.92 -2.39 -0.02 1.55 16 35 H 0.41 7.58 7.60 -92.71 -0.70 6.88 16 36 H 0.14 3.40 8.05 -2.91 -0.02 3.38 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -79.76 389.64 0.94 -78.81 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.27 Total: 29.68 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.77 Total: -14.21 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -4.13 Total: -122.78 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.34 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.25 Total: 2.92 kcal Total: -79.76 0.94 -78.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167988451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.858 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds