Wall clock time and date at job start Tue Mar 31 2020 17:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36037 * 116.99978 * 2 1 4 4 C 1.38578 * 120.00468 * 0.25034 * 3 2 1 5 5 C 1.38165 * 120.06716 * 180.25390 * 4 3 2 6 6 C 1.50699 * 119.95978 * 179.76821 * 5 4 3 7 7 C 1.50696 * 109.47243 * 264.72526 * 6 5 4 8 8 H 1.08002 * 119.99882 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00059 * 179.72645 * 7 6 5 10 10 N 1.31515 * 119.99788 * 0.27857 * 9 7 6 11 11 Si 1.86801 * 120.00094 * 180.27415 * 9 7 6 12 12 H 1.48500 * 109.46783 * 90.00315 * 11 9 7 13 13 H 1.48500 * 109.47164 * 210.00127 * 11 9 7 14 14 H 1.48497 * 109.47051 * 330.00190 * 11 9 7 15 15 C 1.38833 * 120.07349 * 359.49606 * 5 4 3 16 16 N 1.40254 * 119.99137 * 180.27298 * 15 5 4 17 17 N 1.40443 * 126.79268 * 52.22036 * 16 15 5 18 18 C 1.31120 * 106.78722 * 179.88553 * 17 16 15 19 19 O 1.35851 * 125.56308 * 180.10750 * 18 17 16 20 20 N 1.33556 * 108.86905 * 0.38175 * 18 17 16 21 21 C 1.30922 * 109.79520 * 359.75059 * 20 18 17 22 22 C 1.50700 * 125.93027 * 180.02562 * 21 20 18 23 23 N 1.46900 * 109.47009 * 264.59592 * 22 21 20 24 24 C 1.38814 * 120.01730 * 0.25541 * 15 5 4 25 25 C 1.38480 * 119.93139 * 359.97438 * 24 15 5 26 26 O 1.35991 * 120.03962 * 180.02562 * 25 24 15 27 27 C 1.42894 * 117.00119 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47593 * 300.00005 * 1 2 3 30 30 H 1.09004 * 109.47709 * 60.00237 * 1 2 3 31 31 H 1.08000 * 119.96567 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46933 * 144.72564 * 6 5 4 33 33 H 1.08997 * 109.47201 * 24.73104 * 6 5 4 34 34 H 0.97004 * 120.00137 * 179.97438 * 10 9 7 35 35 H 0.96698 * 114.00118 * 270.28950 * 19 18 17 36 36 H 1.09002 * 109.47503 * 24.60076 * 22 21 20 37 37 H 1.09001 * 109.46734 * 144.59878 * 22 21 20 38 38 H 1.00896 * 110.99552 * 179.97438 * 23 22 21 39 39 H 1.00896 * 111.00173 * 303.95600 * 23 22 21 40 40 H 1.07995 * 120.03787 * 180.02562 * 24 15 5 41 41 H 1.09006 * 109.47047 * 300.00092 * 27 26 25 42 42 H 1.08996 * 109.47094 * 60.00242 * 27 26 25 43 43 H 1.08998 * 109.47410 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2919 2.3744 0.0052 5 6 1.9178 3.6061 0.0000 6 6 1.0947 4.8685 0.0004 7 6 0.9241 5.3574 -1.4148 8 1 1.3677 4.8091 -2.2327 9 6 0.1974 6.5020 -1.6659 10 7 -0.3423 7.1699 -0.6698 11 14 -0.0206 7.1038 -3.4208 12 1 -1.2443 6.4972 -4.0037 13 1 -0.1516 8.5830 -3.4241 14 1 1.1608 6.7097 -4.2295 15 6 3.3040 3.6821 -0.0001 16 7 3.9376 4.9334 0.0003 17 7 3.7028 5.9948 0.8896 18 6 4.5063 6.9691 0.5369 19 8 4.5947 8.1801 1.1463 20 7 5.2193 6.5788 -0.5228 21 6 4.8868 5.3569 -0.8552 22 6 5.4665 4.5623 -1.9970 23 7 4.6015 4.6975 -3.1766 24 6 4.0632 2.5200 -0.0001 25 6 3.4364 1.2852 0.0004 26 8 4.1779 0.1452 0.0009 27 6 5.5989 0.2957 0.0014 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3635 0.5138 -0.8900 31 1 0.2134 2.3173 0.0097 32 1 1.6015 5.6324 0.5901 33 1 0.1161 4.6641 0.4347 34 1 -0.8533 7.9754 -0.8463 35 1 3.9949 8.8469 0.7849 36 1 6.4627 4.9373 -2.2319 37 1 5.5314 3.5120 -1.7126 38 1 4.9693 4.1737 -3.9565 39 1 3.6557 4.4165 -2.9656 40 1 5.1415 2.5787 0.0003 41 1 5.9065 0.8449 -0.8886 42 1 5.9058 0.8451 0.8914 43 1 6.0685 -0.6879 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168761298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:29 Heat of formation + Delta-G solvation = 23.286777 kcal Electronic energy + Delta-G solvation = -30124.690911 eV Core-core repulsion = 25981.132534 eV Total energy + Delta-G solvation = -4143.558376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95176 -40.40258 -38.38834 -37.61537 -36.73923 -34.70738 -33.32572 -32.83836 -31.16103 -30.48497 -28.95341 -28.05228 -27.21647 -26.41013 -25.34590 -23.45656 -22.43753 -21.76832 -20.77321 -20.21222 -18.38942 -18.02033 -17.31732 -16.94766 -16.43318 -16.09554 -16.00178 -15.77221 -15.37472 -15.21146 -14.83913 -14.66547 -14.43353 -14.10133 -13.86907 -13.51641 -13.14752 -12.76465 -12.76263 -12.51110 -12.29240 -12.03682 -11.76461 -11.69709 -11.51094 -11.32030 -11.17176 -11.14086 -10.88269 -10.61486 -10.52030 -9.79970 -9.63267 -9.47892 -9.26795 -9.13069 -8.69322 -8.46677 -8.37649 -7.44226 -6.11078 -4.15794 1.10956 1.57227 2.07665 2.48703 3.00462 3.25376 3.28578 3.33008 3.33415 3.38257 3.76715 3.91655 4.38669 4.58361 4.79286 4.81791 4.88010 5.02700 5.06865 5.10763 5.23841 5.27758 5.29495 5.34365 5.38170 5.46254 5.49509 5.58463 5.66782 5.72142 5.97685 6.34989 6.49707 6.52804 6.67466 6.78391 7.05013 7.06527 7.33899 7.43274 7.49443 7.60884 7.72152 7.82373 7.85115 8.17817 8.43597 8.86850 9.47786 10.98061 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009113 B = 0.005801 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.680217 B = 4825.448349 C = 6390.476167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.115 3.885 4 C -0.167 4.167 5 C 0.001 3.999 6 C 0.038 3.962 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.065 3.935 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.118 3.882 16 N -0.289 5.289 17 N -0.275 5.275 18 C 0.389 3.611 19 O -0.445 6.445 20 N -0.534 5.534 21 C 0.298 3.702 22 C 0.145 3.855 23 N -0.836 5.836 24 C -0.167 4.167 25 C 0.084 3.916 26 O -0.305 6.305 27 C 0.026 3.974 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.407 0.593 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.348 0.652 39 H 0.355 0.645 40 H 0.135 0.865 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 -12.498 -0.559 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.069 3.931 4 C -0.186 4.186 5 C -0.001 4.001 6 C 0.001 3.999 7 C -0.546 4.546 8 H 0.071 0.929 9 C -0.138 4.138 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.193 1.193 15 C 0.027 3.973 16 N -0.077 5.077 17 N -0.113 5.113 18 C 0.070 3.930 19 O -0.245 6.245 20 N -0.271 5.271 21 C 0.022 3.978 22 C 0.012 3.988 23 N -0.370 5.370 24 C -0.188 4.188 25 C 0.039 3.961 26 O -0.219 6.219 27 C -0.069 4.069 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.599 -11.827 0.385 14.628 hybrid contribution -0.807 0.071 -1.192 1.441 sum 7.792 -11.756 -0.807 14.127 Atomic orbital electron populations 1.23093 0.78431 1.03625 1.01928 1.86123 1.21177 1.25924 1.88900 1.18349 0.88888 0.85274 1.00591 1.21002 1.00545 0.89904 1.07139 1.20513 0.91698 0.97733 0.90194 1.18609 0.94129 0.88375 0.98744 1.20820 1.33434 1.09341 0.91031 0.92897 1.24926 0.95434 0.96372 0.97039 1.69961 1.34420 1.17514 1.30715 0.86610 0.78657 0.78071 0.84967 1.20698 1.21197 1.19326 1.16809 0.91063 0.80140 1.09304 1.46772 1.28729 1.10584 1.21610 1.78425 1.20275 0.96998 1.15609 1.21063 0.92208 0.88956 0.90771 1.84811 1.64877 1.16776 1.58021 1.70141 1.30757 1.10602 1.15570 1.23848 0.89660 0.90816 0.93470 1.20184 0.97464 0.95143 0.86051 1.58490 1.06578 1.65689 1.06228 1.20721 0.99750 0.90018 1.08342 1.17591 0.88012 0.85052 1.05491 1.86162 1.18214 1.27753 1.89746 1.23025 0.79216 1.03595 1.01080 0.88444 0.92460 0.92254 0.83751 0.92222 0.95214 0.92844 0.73618 0.87534 0.93330 0.83785 0.83045 0.84693 0.93020 0.92881 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.57 10.28 -34.45 -0.35 -4.92 16 3 C 0.11 1.86 6.70 -39.11 -0.26 1.60 16 4 C -0.17 -2.93 8.66 -39.48 -0.34 -3.27 16 5 C 0.00 0.02 5.09 -104.43 -0.53 -0.52 16 6 C 0.04 0.95 4.79 -29.04 -0.14 0.81 16 7 C -0.51 -13.42 9.09 -34.44 -0.31 -13.73 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 11 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.12 2.23 6.02 -83.57 -0.50 1.72 16 16 N -0.29 -5.82 3.28 -8.02 -0.03 -5.85 16 17 N -0.27 -6.17 10.44 29.19 0.30 -5.87 16 18 C 0.39 8.24 9.46 -91.19 -0.86 7.38 16 19 O -0.44 -8.13 13.66 -19.27 -0.26 -8.40 16 20 N -0.53 -10.94 11.21 -12.02 -0.13 -11.07 16 21 C 0.30 5.56 7.36 -155.44 -1.14 4.42 16 22 C 0.14 2.01 7.01 -4.98 -0.03 1.98 16 23 N -0.84 -12.18 9.61 -11.41 -0.11 -12.29 16 24 C -0.17 -2.57 7.52 -39.28 -0.30 -2.87 16 25 C 0.08 1.30 6.70 -39.14 -0.26 1.04 16 26 O -0.30 -4.23 10.28 -34.30 -0.35 -4.59 16 27 C 0.03 0.24 9.81 101.05 0.99 1.23 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.14 2.36 6.29 -52.49 -0.33 2.03 16 32 H 0.06 1.63 5.72 -51.93 -0.30 1.33 16 33 H 0.03 0.77 8.05 -51.93 -0.42 0.36 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.41 5.77 9.06 45.56 0.41 6.19 16 36 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.56 5.84 -51.93 -0.30 0.26 16 38 H 0.35 3.75 9.08 -39.29 -0.36 3.40 16 39 H 0.36 5.94 8.98 -39.29 -0.35 5.59 16 40 H 0.14 1.73 5.35 -52.49 -0.28 1.45 16 41 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -34.71 365.87 -6.84 -41.55 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.33 Total: 11.78 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.80 Total: 2.72 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.77 Total: -59.88 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.97 Total: -17.91 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.71 -6.84 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168761298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.833 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds