Wall clock time and date at job start Tue Mar 31 2020 17:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00225 * 2 1 4 4 C 1.52994 * 109.47607 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.47474 * 180.02562 * 4 3 2 6 6 O 1.42096 * 108.57474 * 65.51389 * 5 4 3 7 7 O 1.42097 * 108.58008 * 294.48658 * 5 4 3 8 8 C 1.81404 * 101.92007 * 180.02562 * 5 4 3 9 9 C 1.50699 * 109.46702 * 180.02562 * 8 5 4 10 10 O 1.21282 * 120.00336 * 359.97438 * 9 8 5 11 11 N 1.34774 * 119.99794 * 179.97438 * 9 8 5 12 12 C 1.47021 * 125.65040 * 0.02562 * 11 9 8 13 13 C 1.54326 * 107.27450 * 178.89431 * 12 11 9 14 14 C 1.55161 * 102.94120 * 337.80777 * 13 12 11 15 15 H 1.08992 * 111.00257 * 277.42915 * 14 13 12 16 16 N 1.46493 * 111.00261 * 153.57242 * 14 13 12 17 17 C 1.46500 * 120.00616 * 301.45452 * 16 14 13 18 18 C 1.36941 * 119.99880 * 121.45427 * 16 14 13 19 19 H 1.07999 * 120.00038 * 324.25329 * 18 16 14 20 20 C 1.38807 * 120.00333 * 144.24697 * 18 16 14 21 21 N 1.31623 * 120.00367 * 157.67023 * 20 18 16 22 22 Si 1.86801 * 120.00041 * 337.67799 * 20 18 16 23 23 H 1.48495 * 109.47683 * 95.59711 * 22 20 18 24 24 H 1.48498 * 109.47342 * 215.60072 * 22 20 18 25 25 H 1.48509 * 109.46872 * 335.59440 * 22 20 18 26 26 C 1.47423 * 125.64949 * 179.97438 * 11 9 8 27 27 H 1.09000 * 109.47295 * 300.00047 * 1 2 3 28 28 H 1.09009 * 109.47106 * 59.99891 * 1 2 3 29 29 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46994 * 59.99643 * 3 2 1 31 31 H 1.09010 * 109.47174 * 300.00324 * 3 2 1 32 32 H 1.09003 * 109.47275 * 59.99766 * 4 3 2 33 33 H 1.08996 * 109.47208 * 300.00433 * 4 3 2 34 34 H 1.09000 * 109.47153 * 60.00078 * 8 5 4 35 35 H 1.08996 * 109.47059 * 299.99661 * 8 5 4 36 36 H 1.08998 * 109.88230 * 59.47370 * 12 11 9 37 37 H 1.09005 * 110.00984 * 298.38356 * 12 11 9 38 38 H 1.08994 * 110.72132 * 219.44466 * 13 12 11 39 39 H 1.09004 * 110.71678 * 96.16669 * 13 12 11 40 40 H 1.08999 * 109.47174 * 87.27073 * 17 16 14 41 41 H 1.08999 * 109.47118 * 207.26765 * 17 16 14 42 42 H 1.09005 * 109.46689 * 327.27316 * 17 16 14 43 43 H 0.96999 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.36990 * 85.33521 * 26 11 9 45 45 H 1.09000 * 110.36627 * 323.01603 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2733 2.8419 0.0001 6 8 3.9478 3.4817 1.2264 7 8 3.9470 3.4833 -1.2251 8 6 6.0471 2.4622 -0.0016 9 6 6.8356 3.7465 -0.0005 10 8 6.2578 4.8128 0.0007 11 7 8.1829 3.7100 -0.0010 12 6 9.0071 2.4926 -0.0030 13 6 10.4841 2.9392 -0.0312 14 6 10.4020 4.3746 -0.6146 15 1 10.3456 4.3514 -1.7028 16 7 11.5343 5.1890 -0.1667 17 6 11.7644 5.3997 1.2647 18 6 12.3779 5.7534 -1.0860 19 1 12.6179 5.2230 -1.9957 20 6 12.9243 7.0071 -0.8488 21 7 14.0322 7.3687 -1.4606 22 14 12.0875 8.1812 0.3389 23 1 12.7143 8.0594 1.6796 24 1 12.2383 9.5741 -0.1532 25 1 10.6445 7.8436 0.4345 26 6 9.0742 4.8843 -0.0006 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8567 0.6439 -0.8908 33 1 3.8574 0.6436 0.8890 34 1 6.2942 1.8844 -0.8922 35 1 6.2956 1.8831 0.8877 36 1 8.7836 1.8950 -0.8867 37 1 8.8133 1.9094 0.8973 38 1 11.0705 2.2912 -0.6825 39 1 10.9013 2.9554 0.9757 40 1 12.3739 4.5863 1.6584 41 1 12.2825 6.3470 1.4139 42 1 10.8078 5.4225 1.7869 43 1 14.4143 8.2447 -1.2946 44 1 9.2377 5.2362 1.0181 45 1 8.6531 5.6803 -0.6147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190974321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:08 Heat of formation + Delta-G solvation = -103.099303 kcal Electronic energy + Delta-G solvation = -27140.375108 eV Core-core repulsion = 23094.487420 eV Total energy + Delta-G solvation = -4045.887688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.11808 -38.48877 -37.84060 -37.26542 -36.26636 -35.14255 -32.53345 -32.11488 -31.09715 -30.05344 -28.12452 -27.06803 -26.31556 -24.24392 -23.65101 -22.49269 -19.83759 -19.52176 -19.05537 -17.90796 -17.26364 -17.14372 -17.03966 -16.64901 -16.45268 -15.99035 -15.86891 -15.43420 -15.30872 -14.92228 -14.45320 -14.11884 -13.86396 -13.55134 -13.17718 -12.92242 -12.79984 -12.66882 -12.39187 -12.36279 -12.32928 -12.28822 -12.22414 -12.09951 -11.96505 -11.86566 -11.43184 -11.12937 -10.94821 -10.88088 -10.59315 -10.33012 -10.28964 -10.21696 -10.02449 -9.65156 -8.68075 -8.60301 -7.00144 -6.09356 -3.52203 -0.56074 2.33952 2.34455 2.68852 3.05987 3.26222 3.44604 3.48913 3.58846 3.62325 4.07776 4.09340 4.12726 4.43755 4.49444 4.64609 4.65410 4.74515 4.81162 4.82514 4.97522 4.98763 5.08041 5.09035 5.16803 5.17342 5.27930 5.50587 5.60171 5.74800 6.00296 6.08810 6.20266 6.24335 6.31094 6.48643 6.53755 6.58043 6.69046 7.38977 7.85185 7.91642 8.24983 8.83452 9.58481 9.95230 11.05416 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.002325 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.991402 B =12041.009159 C =12425.546216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.073 3.927 4 C -0.628 4.628 5 S 2.460 3.540 6 O -0.914 6.914 7 O -0.913 6.913 8 C -0.650 4.650 9 C 0.552 3.448 10 O -0.533 6.533 11 N -0.601 5.601 12 C 0.098 3.902 13 C -0.151 4.151 14 C 0.171 3.829 15 H 0.090 0.910 16 N -0.594 5.594 17 C 0.105 3.895 18 C -0.277 4.277 19 H 0.083 0.917 20 C 0.038 3.962 21 N -0.895 5.895 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.077 3.923 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.021 0.979 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.327 -18.591 4.370 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C -0.004 4.004 4 C -0.755 4.755 5 S 2.635 3.365 6 O -0.912 6.912 7 O -0.910 6.910 8 C -0.778 4.778 9 C 0.337 3.663 10 O -0.412 6.412 11 N -0.334 5.334 12 C -0.025 4.025 13 C -0.191 4.191 14 C 0.062 3.938 15 H 0.108 0.892 16 N -0.315 5.315 17 C -0.039 4.039 18 C -0.405 4.405 19 H 0.101 0.899 20 C -0.164 4.164 21 N -0.535 5.535 22 Si 0.712 3.288 23 H -0.214 1.214 24 H -0.228 1.228 25 H -0.193 1.193 26 C -0.047 4.047 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.817 -17.236 4.331 28.140 hybrid contribution -0.010 -0.119 0.741 0.750 sum -21.827 -17.356 5.072 28.343 Atomic orbital electron populations 1.22853 0.80240 1.03302 1.00639 1.87900 1.20312 1.26519 1.95556 1.22036 0.89440 0.86619 1.02331 1.30647 1.06012 1.25949 1.12873 1.07238 0.76876 0.76418 0.75976 1.93598 1.81292 1.70484 1.45777 1.93603 1.81242 1.70374 1.45787 1.30780 1.26085 1.07453 1.13533 1.18632 0.81877 0.88184 0.77601 1.90873 1.68607 1.30773 1.50919 1.48336 1.04045 1.09957 1.71061 1.22161 0.92082 0.86999 1.01237 1.23177 0.92841 0.99992 1.03111 1.21637 0.85008 0.89049 0.98148 0.89167 1.43997 1.27149 1.58788 1.01568 1.21386 0.97890 0.99538 0.85065 1.18785 1.20200 0.98661 1.02850 0.89926 1.25455 0.96426 0.96896 0.97621 1.69853 1.17653 1.21213 1.44809 0.86893 0.81352 0.80471 0.80062 1.21406 1.22823 1.19271 1.23258 0.90968 0.87991 1.02461 0.93517 0.93500 0.89105 0.91289 0.91258 0.83946 0.84010 0.82128 0.82262 0.91268 0.91568 0.89917 0.90442 0.96133 0.93333 0.94889 0.92489 0.90987 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.14 10.70 -35.23 -0.38 -3.51 16 3 C 0.07 0.55 5.95 37.15 0.22 0.77 16 4 C -0.63 -3.60 6.17 37.15 0.23 -3.37 16 5 S 2.46 24.46 3.96 -107.50 -0.43 24.04 16 6 O -0.91 -12.54 17.95 -59.53 -1.07 -13.61 16 7 O -0.91 -12.63 17.94 -59.53 -1.07 -13.70 16 8 C -0.65 -5.35 5.48 36.01 0.20 -5.16 16 9 C 0.55 8.15 7.87 -10.99 -0.09 8.06 16 10 O -0.53 -10.32 15.88 2.55 0.04 -10.28 16 11 N -0.60 -8.72 3.33 -170.51 -0.57 -9.28 16 12 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 13 C -0.15 -2.04 6.54 -24.89 -0.16 -2.20 16 14 C 0.17 3.08 3.55 -65.78 -0.23 2.85 16 15 H 0.09 1.67 7.96 -51.93 -0.41 1.26 16 16 N -0.59 -13.20 2.55 -171.03 -0.44 -13.63 16 17 C 0.11 2.17 8.40 59.85 0.50 2.67 16 18 C -0.28 -7.38 9.89 -15.06 -0.15 -7.53 16 19 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 20 C 0.04 1.05 5.30 -17.43 -0.09 0.96 16 21 N -0.90 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.88 21.97 24.95 -169.99 -4.24 17.73 16 23 H -0.29 -6.89 6.67 56.52 0.38 -6.52 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.08 1.36 6.47 -2.53 -0.02 1.35 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.14 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.16 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.16 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.06 7.17 -51.93 -0.37 0.69 16 40 H 0.02 0.39 7.99 -51.93 -0.41 -0.02 16 41 H 0.05 1.11 3.16 -51.93 -0.16 0.94 16 42 H 0.03 0.60 6.00 -51.93 -0.31 0.29 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 1.32 5.99 -51.92 -0.31 1.01 16 45 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -38.83 375.58 -7.26 -46.10 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -7.06 Total: -4.36 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 1.50 Total: 0.69 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.23 Total: -48.75 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -2.47 Total: -41.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.24 Total: 17.73 kcal Atomic # 16 Polarization: 24.46 SS G_CDS: -0.43 Total: 24.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.83 -7.26 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190974321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.003 kcal (2) G-P(sol) polarization free energy of solvation -38.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds