Wall clock time and date at job start Tue Mar 31 2020 17:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00225 * 2 1 4 4 C 1.52994 * 109.47607 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.47474 * 180.02562 * 4 3 2 6 6 O 1.42096 * 108.57474 * 65.51389 * 5 4 3 7 7 O 1.42097 * 108.58008 * 294.48658 * 5 4 3 8 8 C 1.81404 * 101.92007 * 180.02562 * 5 4 3 9 9 C 1.50699 * 109.46702 * 180.02562 * 8 5 4 10 10 O 1.21282 * 120.00336 * 359.97438 * 9 8 5 11 11 N 1.34774 * 119.99794 * 179.97438 * 9 8 5 12 12 C 1.47021 * 125.65040 * 0.02562 * 11 9 8 13 13 C 1.54326 * 107.27450 * 178.89431 * 12 11 9 14 14 C 1.55161 * 102.94120 * 337.80777 * 13 12 11 15 15 H 1.08992 * 111.00257 * 277.42915 * 14 13 12 16 16 N 1.46493 * 111.00261 * 153.57242 * 14 13 12 17 17 C 1.46500 * 120.00616 * 301.45452 * 16 14 13 18 18 C 1.36941 * 119.99880 * 121.45427 * 16 14 13 19 19 H 1.07999 * 120.00038 * 324.25329 * 18 16 14 20 20 C 1.38807 * 120.00333 * 144.24697 * 18 16 14 21 21 N 1.31623 * 120.00367 * 157.67023 * 20 18 16 22 22 Si 1.86801 * 120.00041 * 337.67799 * 20 18 16 23 23 H 1.48495 * 109.47683 * 95.59711 * 22 20 18 24 24 H 1.48498 * 109.47342 * 215.60072 * 22 20 18 25 25 H 1.48509 * 109.46872 * 335.59440 * 22 20 18 26 26 C 1.47423 * 125.64949 * 179.97438 * 11 9 8 27 27 H 1.09000 * 109.47295 * 300.00047 * 1 2 3 28 28 H 1.09009 * 109.47106 * 59.99891 * 1 2 3 29 29 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46994 * 59.99643 * 3 2 1 31 31 H 1.09010 * 109.47174 * 300.00324 * 3 2 1 32 32 H 1.09003 * 109.47275 * 59.99766 * 4 3 2 33 33 H 1.08996 * 109.47208 * 300.00433 * 4 3 2 34 34 H 1.09000 * 109.47153 * 60.00078 * 8 5 4 35 35 H 1.08996 * 109.47059 * 299.99661 * 8 5 4 36 36 H 1.08998 * 109.88230 * 59.47370 * 12 11 9 37 37 H 1.09005 * 110.00984 * 298.38356 * 12 11 9 38 38 H 1.08994 * 110.72132 * 219.44466 * 13 12 11 39 39 H 1.09004 * 110.71678 * 96.16669 * 13 12 11 40 40 H 1.08999 * 109.47174 * 87.27073 * 17 16 14 41 41 H 1.08999 * 109.47118 * 207.26765 * 17 16 14 42 42 H 1.09005 * 109.46689 * 327.27316 * 17 16 14 43 43 H 0.96999 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.36990 * 85.33521 * 26 11 9 45 45 H 1.09000 * 110.36627 * 323.01603 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2733 2.8419 0.0001 6 8 3.9478 3.4817 1.2264 7 8 3.9470 3.4833 -1.2251 8 6 6.0471 2.4622 -0.0016 9 6 6.8356 3.7465 -0.0005 10 8 6.2578 4.8128 0.0007 11 7 8.1829 3.7100 -0.0010 12 6 9.0071 2.4926 -0.0030 13 6 10.4841 2.9392 -0.0312 14 6 10.4020 4.3746 -0.6146 15 1 10.3456 4.3514 -1.7028 16 7 11.5343 5.1890 -0.1667 17 6 11.7644 5.3997 1.2647 18 6 12.3779 5.7534 -1.0860 19 1 12.6179 5.2230 -1.9957 20 6 12.9243 7.0071 -0.8488 21 7 14.0322 7.3687 -1.4606 22 14 12.0875 8.1812 0.3389 23 1 12.7143 8.0594 1.6796 24 1 12.2383 9.5741 -0.1532 25 1 10.6445 7.8436 0.4345 26 6 9.0742 4.8843 -0.0006 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8567 0.6439 -0.8908 33 1 3.8574 0.6436 0.8890 34 1 6.2942 1.8844 -0.8922 35 1 6.2956 1.8831 0.8877 36 1 8.7836 1.8950 -0.8867 37 1 8.8133 1.9094 0.8973 38 1 11.0705 2.2912 -0.6825 39 1 10.9013 2.9554 0.9757 40 1 12.3739 4.5863 1.6584 41 1 12.2825 6.3470 1.4139 42 1 10.8078 5.4225 1.7869 43 1 14.4143 8.2447 -1.2946 44 1 9.2377 5.2362 1.0181 45 1 8.6531 5.6803 -0.6147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190974321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:07 Heat of formation + Delta-G solvation = -136.262719 kcal Electronic energy + Delta-G solvation = -27141.813182 eV Core-core repulsion = 23094.487420 eV Total energy + Delta-G solvation = -4047.325761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.28222 -39.18607 -38.97578 -38.11267 -37.11342 -36.73302 -33.92762 -33.00973 -32.36406 -31.08536 -29.36466 -28.12163 -27.48278 -25.55745 -24.46689 -23.78266 -21.13283 -20.72530 -19.82513 -19.04319 -18.71658 -18.05397 -17.90686 -17.61933 -17.42530 -17.08125 -16.60318 -16.57979 -16.17254 -15.84930 -15.66829 -15.35226 -14.78036 -14.61465 -14.57166 -14.35222 -14.23421 -13.90795 -13.63216 -13.44167 -13.33417 -13.19673 -13.18407 -13.11482 -12.69332 -12.55590 -12.47767 -12.42261 -12.27179 -12.12330 -12.05330 -11.71067 -11.64563 -11.49976 -11.40343 -10.77400 -10.68268 -9.82437 -8.83899 -8.25015 -5.62321 -1.26059 1.25133 1.29597 1.39789 1.48070 1.67477 1.70713 2.36044 2.45788 2.93873 2.99594 3.02202 3.23788 3.30911 3.59168 3.73105 3.79849 3.88713 3.95583 4.15066 4.18741 4.25446 4.26694 4.40938 4.43332 4.47265 4.52103 4.55960 4.64349 4.71991 4.75231 4.85060 4.87080 4.94045 4.99527 5.05221 5.27461 5.36289 5.87791 6.01078 6.13122 6.30943 6.78114 6.90913 7.55857 7.96521 8.94169 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.002325 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.991402 B =12041.009159 C =12425.546216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.397 6.397 3 C 0.055 3.945 4 C -0.594 4.594 5 S 2.446 3.554 6 O -0.969 6.969 7 O -0.970 6.970 8 C -0.632 4.632 9 C 0.535 3.465 10 O -0.594 6.594 11 N -0.601 5.601 12 C 0.098 3.902 13 C -0.140 4.140 14 C 0.162 3.838 15 H 0.076 0.924 16 N -0.608 5.608 17 C 0.104 3.896 18 C -0.259 4.259 19 H 0.054 0.946 20 C -0.018 4.018 21 N -0.943 5.943 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.312 1.312 25 H -0.268 1.268 26 C 0.082 3.918 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.210 0.790 35 H 0.212 0.788 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.065 0.935 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.578 -22.966 5.807 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.317 6.317 3 C -0.023 4.023 4 C -0.725 4.725 5 S 2.630 3.370 6 O -0.966 6.966 7 O -0.967 6.967 8 C -0.761 4.761 9 C 0.324 3.676 10 O -0.477 6.477 11 N -0.334 5.334 12 C -0.024 4.024 13 C -0.179 4.179 14 C 0.054 3.946 15 H 0.094 0.906 16 N -0.331 5.331 17 C -0.039 4.039 18 C -0.388 4.388 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.587 5.587 22 Si 0.770 3.230 23 H -0.198 1.198 24 H -0.241 1.241 25 H -0.193 1.193 26 C -0.043 4.043 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.194 0.806 33 H 0.194 0.806 34 H 0.227 0.773 35 H 0.229 0.771 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.101 -21.631 5.795 32.174 hybrid contribution 0.317 1.070 0.245 1.143 sum -22.784 -20.561 6.040 31.278 Atomic orbital electron populations 1.23070 0.79130 1.04532 1.01251 1.87854 1.21642 1.26492 1.95668 1.22227 0.90771 0.86765 1.02534 1.30286 1.04309 1.21569 1.16307 1.07089 0.77865 0.78130 0.73952 1.93535 1.82481 1.73491 1.47084 1.93539 1.82481 1.73458 1.47236 1.30672 1.22371 1.04644 1.18418 1.19688 0.81902 0.89798 0.76205 1.90858 1.69738 1.33786 1.53270 1.48387 1.04221 1.09984 1.70761 1.22489 0.88979 0.85700 1.05187 1.23063 0.95627 0.96237 1.02968 1.21733 0.83751 0.91345 0.97773 0.90603 1.44064 1.28171 1.59204 1.01650 1.21422 0.99240 0.99036 0.84243 1.18727 1.19715 0.98052 1.02353 0.92854 1.26006 0.97065 0.98467 0.99925 1.69960 1.19405 1.21649 1.47638 0.85951 0.80242 0.77873 0.78983 1.19799 1.24056 1.19303 1.22851 0.91477 0.88837 1.01157 0.92928 0.92985 0.87605 0.91314 0.91401 0.80642 0.80563 0.77277 0.77120 0.87605 0.87284 0.88606 0.90198 0.94139 0.95592 0.92577 0.92719 0.91663 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 11.01 113.37 1.25 1.39 16 2 O -0.40 -5.34 10.70 -148.98 -1.59 -6.94 16 3 C 0.05 0.69 5.95 71.98 0.43 1.12 16 4 C -0.59 -4.18 6.17 71.98 0.44 -3.73 16 5 S 2.45 44.06 3.96 -56.49 -0.22 43.83 16 6 O -0.97 -26.44 17.95 -125.75 -2.26 -28.69 16 7 O -0.97 -26.99 17.94 -125.75 -2.26 -29.25 16 8 C -0.63 -7.24 5.48 71.24 0.39 -6.85 16 9 C 0.54 14.60 7.87 87.66 0.69 15.29 16 10 O -0.59 -23.41 15.88 -0.16 0.00 -23.41 16 11 N -0.60 -15.64 3.33 -811.78 -2.70 -18.34 16 12 C 0.10 1.53 6.49 86.73 0.56 2.09 16 13 C -0.14 -3.22 6.54 31.78 0.21 -3.01 16 14 C 0.16 5.66 3.55 46.39 0.16 5.83 16 15 H 0.08 2.82 7.96 -2.39 -0.02 2.80 16 16 N -0.61 -26.79 2.55 -695.03 -1.77 -28.56 16 17 C 0.10 4.13 8.40 127.77 1.07 5.20 16 18 C -0.26 -14.10 9.89 84.03 0.83 -13.27 16 19 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 20 C -0.02 -1.01 5.30 84.86 0.45 -0.56 16 21 N -0.94 -57.96 13.97 21.65 0.30 -57.65 16 22 Si 0.94 46.64 24.95 68.60 1.71 48.35 16 23 H -0.27 -12.64 6.67 99.48 0.66 -11.98 16 24 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 25 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.08 2.86 6.47 86.86 0.56 3.42 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.21 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.21 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 1.84 7.17 -2.39 -0.02 1.83 16 40 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 41 H 0.03 1.15 3.16 -2.39 -0.01 1.14 16 42 H 0.06 1.94 6.00 -2.38 -0.01 1.93 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.07 2.34 5.99 -2.38 -0.01 2.32 16 45 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -93.79 375.58 -0.80 -94.59 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 0.94 Total: -0.85 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 7.05 Total: 6.92 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.17 Total: -104.55 kcal Atomic # 8 Polarization: -82.18 SS G_CDS: -6.11 Total: -88.29 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.71 Total: 48.35 kcal Atomic # 16 Polarization: 44.06 SS G_CDS: -0.22 Total: 43.83 kcal Total: -93.79 -0.80 -94.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190974321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.672 kcal (2) G-P(sol) polarization free energy of solvation -93.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds