Wall clock time and date at job start Tue Mar 31 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00778 * 2 1 4 4 C 1.52990 * 109.47668 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47031 * 305.00161 * 4 3 2 6 6 O 1.42902 * 109.47157 * 64.99823 * 4 3 2 7 7 C 1.52999 * 109.47428 * 184.99839 * 4 3 2 8 8 N 1.46903 * 109.47379 * 177.74124 * 7 4 3 9 9 C 1.47892 * 111.00360 * 294.28600 * 8 7 4 10 10 C 1.53989 * 107.06060 * 214.15388 * 9 8 7 11 11 H 1.09008 * 110.31075 * 120.13919 * 10 9 8 12 12 O 1.42899 * 110.31193 * 242.20927 * 10 9 8 13 13 C 1.54591 * 105.13834 * 1.22316 * 10 9 8 14 14 H 1.09000 * 110.72592 * 263.59745 * 13 10 9 15 15 N 1.46502 * 110.72429 * 140.49279 * 13 10 9 16 16 C 1.34778 * 119.99802 * 154.99842 * 15 13 10 17 17 O 1.21279 * 120.00056 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99656 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46809 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99938 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00143 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00218 * 179.97438 * 20 19 18 23 23 N 1.31638 * 119.99805 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00357 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46971 * 60.00031 * 24 22 20 26 26 H 1.48501 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46954 * 300.00468 * 24 22 20 28 28 C 1.48535 * 111.00081 * 176.88334 * 8 7 4 29 29 H 1.08997 * 109.46796 * 59.99820 * 1 2 3 30 30 H 1.08994 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46791 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.46783 * 59.99161 * 3 2 1 33 33 H 1.09004 * 109.47050 * 300.00513 * 3 2 1 34 34 H 0.96696 * 113.99967 * 60.00517 * 6 4 3 35 35 H 1.08999 * 109.46722 * 57.74632 * 7 4 3 36 36 H 1.09003 * 109.47062 * 297.74497 * 7 4 3 37 37 H 1.09004 * 109.91974 * 333.50873 * 9 8 7 38 38 H 1.08997 * 109.91946 * 94.59975 * 9 8 7 39 39 H 0.96709 * 113.99384 * 298.54677 * 12 10 9 40 40 H 0.96998 * 120.00247 * 335.00155 * 15 13 10 41 41 H 1.08992 * 109.47174 * 299.99974 * 18 16 15 42 42 H 1.09004 * 109.46866 * 60.00709 * 18 16 15 43 43 H 0.97004 * 119.99749 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.66669 * 278.15898 * 28 8 7 45 45 H 1.09001 * 110.66455 * 41.29061 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8409 6 8 3.9649 0.5794 -1.2220 7 6 4.1576 2.5767 0.1250 8 7 5.6207 2.4563 0.1788 9 6 6.0503 1.7590 1.4103 10 6 7.3904 2.3843 1.8394 11 1 7.3044 2.8162 2.8366 12 8 8.4274 1.4015 1.8133 13 6 7.6713 3.4915 0.7977 14 1 8.3349 3.1249 0.0146 15 7 8.2393 4.6780 1.4425 16 6 9.0050 5.5296 0.7319 17 8 9.2234 5.3139 -0.4414 18 6 9.5888 6.7505 1.3951 19 16 10.5597 7.6866 0.1879 20 6 11.1084 9.0182 1.2031 21 1 10.8188 9.0595 2.2427 22 6 11.9136 10.0135 0.6669 23 7 12.2670 9.9628 -0.6001 24 14 12.4959 11.4247 1.7433 25 1 13.2944 10.8877 2.8744 26 1 13.3357 12.3476 0.9381 27 1 11.3201 12.1610 2.2730 28 6 6.2635 3.7945 0.2259 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 3.7177 1.0751 -2.0146 35 1 3.7986 3.0540 1.0368 36 1 3.8741 3.1804 -0.7371 37 1 5.3068 1.8993 2.1950 38 1 6.1809 0.6958 1.2087 39 1 8.2819 0.6601 2.4170 40 1 8.0644 4.8507 2.3808 41 1 8.7828 7.3770 1.7769 42 1 10.2322 6.4434 2.2196 43 1 12.8295 10.6586 -0.9749 44 1 6.3381 4.2208 -0.7744 45 1 5.7141 4.4620 0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191162362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:44 Heat of formation + Delta-G solvation = -167.161433 kcal Electronic energy + Delta-G solvation = -26276.532424 eV Core-core repulsion = 22227.866794 eV Total energy + Delta-G solvation = -4048.665630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.32765 -39.08038 -38.38077 -37.04744 -35.87686 -34.25442 -32.42905 -31.66123 -29.98826 -28.99760 -28.00830 -26.87717 -25.48815 -24.88794 -22.57725 -21.65037 -20.92235 -20.47410 -17.94495 -17.64852 -17.39207 -17.04131 -16.53928 -16.38674 -16.34398 -15.84422 -15.48063 -15.07195 -14.81028 -14.77898 -14.64843 -14.11738 -13.87207 -13.70924 -13.56905 -13.10275 -13.07207 -12.65236 -12.63512 -12.55230 -12.34844 -12.07833 -11.88969 -11.68607 -11.16354 -11.05219 -11.04204 -10.92251 -10.77056 -10.45967 -10.36570 -10.20583 -9.82894 -9.43513 -9.07364 -9.00324 -8.77254 -8.24264 -6.50135 -6.21542 -3.92350 2.84200 3.01938 3.08789 3.23108 3.26457 3.29347 3.56145 3.71356 3.86925 4.09175 4.20155 4.25230 4.38982 4.50046 4.54830 4.60977 4.68097 4.77865 4.81981 4.88034 4.92534 4.97386 5.06882 5.11783 5.13404 5.14623 5.19254 5.20643 5.52446 5.57801 5.60708 5.71429 5.86896 5.95149 6.11931 6.33265 6.50266 6.62129 6.64594 7.36595 7.40345 7.58790 7.63784 8.34699 8.57662 9.23461 10.85770 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.001877 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.893362 B =14913.985405 C =15351.348664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.028 3.972 4 C 0.116 3.884 5 H 0.103 0.897 6 O -0.538 6.538 7 C 0.016 3.984 8 N -0.496 5.496 9 C 0.005 3.995 10 C 0.089 3.911 11 H 0.067 0.933 12 O -0.550 6.550 13 C 0.152 3.848 14 H 0.117 0.883 15 N -0.731 5.731 16 C 0.535 3.465 17 O -0.511 6.511 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.026 3.974 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.373 0.627 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.379 0.621 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.098 0.902 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 -18.404 7.037 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.050 4.050 4 C 0.056 3.944 5 H 0.121 0.879 6 O -0.342 6.342 7 C -0.113 4.113 8 N -0.220 5.220 9 C -0.124 4.124 10 C 0.029 3.971 11 H 0.085 0.915 12 O -0.355 6.355 13 C 0.046 3.954 14 H 0.135 0.865 15 N -0.386 5.386 16 C 0.321 3.679 17 O -0.384 6.384 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.102 4.102 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.226 0.774 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.971 -19.165 4.407 29.486 hybrid contribution -1.150 2.078 3.431 4.173 sum -23.121 -17.087 7.838 29.799 Atomic orbital electron populations 1.22782 0.80960 1.02986 0.99954 1.87957 1.19632 1.26980 1.95359 1.23294 0.95115 0.85570 1.00978 1.21822 0.89546 0.93441 0.89585 0.87883 1.86664 1.80900 1.51844 1.14758 1.22948 0.88999 0.97229 1.02165 1.64648 1.06161 1.15457 1.35763 1.23701 0.96178 1.01033 0.91439 1.22868 0.86658 0.89503 0.98078 0.91508 1.86652 1.45938 1.35752 1.67154 1.21618 0.94750 0.83809 0.95239 0.86505 1.45954 1.53584 1.25011 1.14005 1.20340 0.77110 0.83510 0.86946 1.90719 1.57880 1.73918 1.15861 1.23534 1.03918 0.97556 1.05387 1.85424 1.60780 1.24528 1.12374 1.22829 1.37097 1.10136 0.98485 0.90992 1.24989 0.95272 0.97887 0.95397 1.70012 1.34264 1.33850 1.12097 0.86225 0.78700 0.80739 0.79826 1.19939 1.20791 1.19986 1.23671 0.93815 0.90019 1.02737 0.93991 0.89415 0.94121 0.92548 0.92726 0.78032 0.93493 0.89637 0.93144 0.88802 0.77405 0.76887 0.89231 0.89149 0.92111 0.88412 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.23 10.67 -40.08 -0.43 -3.66 16 3 C 0.03 0.18 5.57 37.15 0.21 0.38 16 4 C 0.12 0.87 3.21 -26.74 -0.09 0.78 16 5 H 0.10 0.84 7.30 -51.93 -0.38 0.46 16 6 O -0.54 -5.12 13.21 -40.08 -0.53 -5.65 16 7 C 0.02 0.11 4.39 -3.82 -0.02 0.09 16 8 N -0.50 -4.75 5.20 -230.46 -1.20 -5.95 16 9 C 0.01 0.04 5.35 -2.76 -0.01 0.03 16 10 C 0.09 0.84 4.09 -25.38 -0.10 0.73 16 11 H 0.07 0.49 7.75 -51.92 -0.40 0.09 16 12 O -0.55 -5.74 13.27 -35.23 -0.47 -6.20 16 13 C 0.15 1.92 3.16 -66.07 -0.21 1.72 16 14 H 0.12 1.92 7.49 -51.93 -0.39 1.53 16 15 N -0.73 -9.77 5.18 -52.01 -0.27 -10.04 16 16 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 17 O -0.51 -11.66 15.51 5.56 0.09 -11.58 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 28 C 0.03 0.29 6.25 -1.90 -0.01 0.28 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.37 2.37 9.04 45.56 0.41 2.78 16 35 H 0.05 0.28 7.94 -51.93 -0.41 -0.13 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.32 7.64 -51.93 -0.40 -0.08 16 38 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 39 H 0.38 2.06 9.11 45.56 0.41 2.48 16 40 H 0.40 4.02 8.39 -40.82 -0.34 3.68 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -37.93 389.77 -7.90 -45.82 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.67 Total: 4.92 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 1.21 Total: -0.66 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.73 Total: -41.41 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.34 Total: -27.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.93 -7.90 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191162362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.337 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds