Wall clock time and date at job start Tue Mar 31 2020 17:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00778 * 2 1 4 4 C 1.52990 * 109.47668 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47031 * 305.00161 * 4 3 2 6 6 O 1.42902 * 109.47157 * 64.99823 * 4 3 2 7 7 C 1.52999 * 109.47428 * 184.99839 * 4 3 2 8 8 N 1.46903 * 109.47379 * 177.74124 * 7 4 3 9 9 C 1.47892 * 111.00360 * 294.28600 * 8 7 4 10 10 C 1.53989 * 107.06060 * 214.15388 * 9 8 7 11 11 H 1.09008 * 110.31075 * 120.13919 * 10 9 8 12 12 O 1.42899 * 110.31193 * 242.20927 * 10 9 8 13 13 C 1.54591 * 105.13834 * 1.22316 * 10 9 8 14 14 H 1.09000 * 110.72592 * 263.59745 * 13 10 9 15 15 N 1.46502 * 110.72429 * 140.49279 * 13 10 9 16 16 C 1.34778 * 119.99802 * 154.99842 * 15 13 10 17 17 O 1.21279 * 120.00056 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99656 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46809 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99938 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00143 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00218 * 179.97438 * 20 19 18 23 23 N 1.31638 * 119.99805 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00357 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46971 * 60.00031 * 24 22 20 26 26 H 1.48501 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46954 * 300.00468 * 24 22 20 28 28 C 1.48535 * 111.00081 * 176.88334 * 8 7 4 29 29 H 1.08997 * 109.46796 * 59.99820 * 1 2 3 30 30 H 1.08994 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46791 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.46783 * 59.99161 * 3 2 1 33 33 H 1.09004 * 109.47050 * 300.00513 * 3 2 1 34 34 H 0.96696 * 113.99967 * 60.00517 * 6 4 3 35 35 H 1.08999 * 109.46722 * 57.74632 * 7 4 3 36 36 H 1.09003 * 109.47062 * 297.74497 * 7 4 3 37 37 H 1.09004 * 109.91974 * 333.50873 * 9 8 7 38 38 H 1.08997 * 109.91946 * 94.59975 * 9 8 7 39 39 H 0.96709 * 113.99384 * 298.54677 * 12 10 9 40 40 H 0.96998 * 120.00247 * 335.00155 * 15 13 10 41 41 H 1.08992 * 109.47174 * 299.99974 * 18 16 15 42 42 H 1.09004 * 109.46866 * 60.00709 * 18 16 15 43 43 H 0.97004 * 119.99749 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.66669 * 278.15898 * 28 8 7 45 45 H 1.09001 * 110.66455 * 41.29061 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8409 6 8 3.9649 0.5794 -1.2220 7 6 4.1576 2.5767 0.1250 8 7 5.6207 2.4563 0.1788 9 6 6.0503 1.7590 1.4103 10 6 7.3904 2.3843 1.8394 11 1 7.3044 2.8162 2.8366 12 8 8.4274 1.4015 1.8133 13 6 7.6713 3.4915 0.7977 14 1 8.3349 3.1249 0.0146 15 7 8.2393 4.6780 1.4425 16 6 9.0050 5.5296 0.7319 17 8 9.2234 5.3139 -0.4414 18 6 9.5888 6.7505 1.3951 19 16 10.5597 7.6866 0.1879 20 6 11.1084 9.0182 1.2031 21 1 10.8188 9.0595 2.2427 22 6 11.9136 10.0135 0.6669 23 7 12.2670 9.9628 -0.6001 24 14 12.4959 11.4247 1.7433 25 1 13.2944 10.8877 2.8744 26 1 13.3357 12.3476 0.9381 27 1 11.3201 12.1610 2.2730 28 6 6.2635 3.7945 0.2259 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 3.7177 1.0751 -2.0146 35 1 3.7986 3.0540 1.0368 36 1 3.8741 3.1804 -0.7371 37 1 5.3068 1.8993 2.1950 38 1 6.1809 0.6958 1.2087 39 1 8.2819 0.6601 2.4170 40 1 8.0644 4.8507 2.3808 41 1 8.7828 7.3770 1.7769 42 1 10.2322 6.4434 2.2196 43 1 12.8295 10.6586 -0.9749 44 1 6.3381 4.2208 -0.7744 45 1 5.7141 4.4620 0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191162362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:42 Heat of formation + Delta-G solvation = -203.604004 kcal Electronic energy + Delta-G solvation = -26278.112692 eV Core-core repulsion = 22227.866794 eV Total energy + Delta-G solvation = -4050.245898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.29129 -40.07709 -39.20004 -37.67768 -36.62520 -35.45700 -34.57594 -32.51525 -31.13641 -29.78400 -28.95606 -27.69149 -27.39340 -25.51508 -23.20207 -22.56607 -21.84146 -21.63206 -19.86051 -18.49210 -18.25160 -17.76623 -17.47316 -17.28296 -16.98556 -16.87168 -16.58799 -16.48107 -16.28843 -15.84602 -15.55218 -15.24304 -14.82830 -14.69585 -14.46627 -14.35479 -14.11684 -13.84621 -13.71413 -13.21326 -13.16484 -13.11460 -13.03609 -12.85514 -12.62417 -12.56087 -12.39210 -11.80936 -11.72023 -11.69181 -11.23580 -11.12231 -10.98656 -10.91920 -10.67137 -10.27246 -10.22510 -9.44137 -8.66535 -8.33716 -6.12264 1.25525 1.44540 1.46230 1.55816 1.56885 2.09302 2.28115 2.53055 3.00319 3.04452 3.12187 3.30797 3.50532 3.56145 3.65778 3.91315 3.92943 4.00516 4.05976 4.13404 4.16402 4.28887 4.29738 4.35356 4.41542 4.49952 4.50067 4.54244 4.54816 4.61229 4.80623 4.85199 4.87875 4.89368 5.02520 5.33238 5.42155 5.74162 5.90430 6.19811 6.20199 6.44188 6.86780 6.89667 7.07261 7.20781 8.75215 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.001877 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.893362 B =14913.985405 C =15351.348664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.030 3.970 4 C 0.119 3.881 5 H 0.095 0.905 6 O -0.565 6.565 7 C 0.019 3.981 8 N -0.516 5.516 9 C 0.011 3.989 10 C 0.098 3.902 11 H 0.099 0.901 12 O -0.577 6.577 13 C 0.144 3.856 14 H 0.071 0.929 15 N -0.703 5.703 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.128 4.128 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.261 1.261 28 C 0.037 3.963 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.383 0.617 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.400 0.600 40 H 0.418 0.582 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.143 -18.204 10.247 32.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.048 4.048 4 C 0.059 3.941 5 H 0.113 0.887 6 O -0.371 6.371 7 C -0.109 4.109 8 N -0.241 5.241 9 C -0.117 4.117 10 C 0.038 3.962 11 H 0.116 0.884 12 O -0.386 6.386 13 C 0.037 3.963 14 H 0.090 0.910 15 N -0.357 5.357 16 C 0.323 3.677 17 O -0.440 6.440 18 C -0.279 4.279 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.185 1.185 28 C -0.092 4.092 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.251 0.749 40 H 0.256 0.744 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.952 -19.008 7.678 31.527 hybrid contribution -0.636 1.856 2.439 3.130 sum -24.588 -17.152 10.117 31.640 Atomic orbital electron populations 1.22927 0.79567 1.03709 1.00909 1.87906 1.21305 1.28338 1.95602 1.23313 0.94022 0.85095 1.02340 1.21830 0.90509 0.93211 0.88527 0.88673 1.86616 1.81455 1.53015 1.15996 1.22956 0.87331 0.97237 1.03379 1.64574 1.07828 1.14576 1.37150 1.23684 0.96068 1.00351 0.91616 1.22856 0.86754 0.88408 0.98226 0.88361 1.86599 1.46706 1.36932 1.68371 1.21667 0.94664 0.84374 0.95571 0.91031 1.45614 1.51549 1.23965 1.14614 1.20135 0.77503 0.83743 0.86348 1.90711 1.60091 1.75068 1.18107 1.23361 1.03751 0.97462 1.03325 1.85644 1.63092 1.26639 1.17153 1.23182 1.37210 1.10232 0.98883 0.89760 1.26141 0.95197 1.00995 0.96841 1.70189 1.35195 1.35056 1.14351 0.84995 0.78498 0.76682 0.77755 1.18691 1.20482 1.18548 1.23438 0.93048 0.91192 1.01546 0.93249 0.88956 0.92895 0.90766 0.91673 0.76846 0.91357 0.89281 0.90188 0.89356 0.74923 0.74408 0.86709 0.87195 0.92015 0.91080 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.43 10.67 -144.34 -1.54 -7.97 16 3 C 0.03 0.31 5.57 71.98 0.40 0.71 16 4 C 0.12 1.58 3.21 30.59 0.10 1.68 16 5 H 0.10 1.39 7.30 -2.39 -0.02 1.37 16 6 O -0.56 -10.50 13.21 -144.34 -1.91 -12.41 16 7 C 0.02 0.23 4.39 86.30 0.38 0.61 16 8 N -0.52 -9.15 5.20 -883.05 -4.59 -13.75 16 9 C 0.01 0.15 5.35 86.45 0.46 0.62 16 10 C 0.10 1.59 4.09 31.47 0.13 1.72 16 11 H 0.10 1.02 7.75 -2.38 -0.02 1.00 16 12 O -0.58 -11.22 13.27 -148.98 -1.98 -13.19 16 13 C 0.14 3.54 3.16 46.19 0.15 3.68 16 14 H 0.07 2.47 7.49 -2.39 -0.02 2.45 16 15 N -0.70 -17.71 5.18 -436.84 -2.26 -19.97 16 16 C 0.54 19.94 7.85 87.66 0.69 20.63 16 17 O -0.56 -26.79 15.51 -3.03 -0.05 -26.84 16 18 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 19 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 20 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 24 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 28 C 0.04 0.77 6.25 86.65 0.54 1.31 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.38 4.80 9.04 -74.06 -0.67 4.13 16 35 H 0.07 0.55 7.94 -2.39 -0.02 0.53 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.66 7.64 -2.38 -0.02 0.64 16 38 H 0.09 1.35 7.96 -2.39 -0.02 1.33 16 39 H 0.40 3.56 9.11 -74.05 -0.67 2.88 16 40 H 0.42 7.06 8.39 -92.71 -0.78 6.28 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.19 8.02 -2.39 -0.02 1.17 16 Total: -1.00 -86.47 389.77 -6.63 -93.10 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -1.10 Total: 22.60 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.64 Total: -1.42 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -6.57 Total: -89.62 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -5.47 Total: -60.41 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -86.47 -6.63 -93.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191162362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.502 kcal (2) G-P(sol) polarization free energy of solvation -86.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds