Wall clock time and date at job start Tue Mar 31 2020 17:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00344 * 2 1 4 4 C 1.53000 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46843 * 305.00119 * 4 3 2 6 6 O 1.42897 * 109.47112 * 65.00233 * 4 3 2 7 7 C 1.53002 * 109.47266 * 185.00408 * 4 3 2 8 8 N 1.46894 * 109.46983 * 176.40871 * 7 4 3 9 9 C 1.48535 * 110.99901 * 176.89879 * 8 7 4 10 10 C 1.54939 * 103.22821 * 159.71550 * 9 8 7 11 11 H 1.09004 * 110.86903 * 81.01896 * 10 9 8 12 12 N 1.46493 * 110.72666 * 204.22798 * 10 9 8 13 13 C 1.34781 * 120.00221 * 268.50375 * 12 10 9 14 14 O 1.21285 * 120.00003 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00323 * 179.97438 * 13 12 10 16 16 S 1.80993 * 109.47407 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00050 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99657 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00351 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47143 * 120.00397 * 21 19 17 24 24 H 1.48502 * 109.47048 * 240.00396 * 21 19 17 25 25 C 1.54594 * 102.92117 * 322.58901 * 10 9 8 26 26 H 1.09005 * 110.30445 * 140.86990 * 25 10 9 27 27 O 1.42898 * 110.30654 * 263.03699 * 25 10 9 28 28 C 1.47896 * 110.99853 * 294.29373 * 8 7 4 29 29 H 1.09002 * 109.47259 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.47326 * 59.99886 * 1 2 3 31 31 H 1.09002 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47545 * 300.00245 * 3 2 1 33 33 H 1.09004 * 109.46814 * 59.99739 * 3 2 1 34 34 H 0.96707 * 114.00231 * 59.99553 * 6 4 3 35 35 H 1.09012 * 109.46400 * 296.40658 * 7 4 3 36 36 H 1.08999 * 109.47112 * 56.40078 * 7 4 3 37 37 H 1.08993 * 110.67104 * 278.15699 * 9 8 7 38 38 H 1.09003 * 110.66457 * 41.28406 * 9 8 7 39 39 H 0.96998 * 120.00175 * 88.49977 * 12 10 9 40 40 H 1.09000 * 109.47086 * 300.00676 * 15 13 12 41 41 H 1.09006 * 109.46682 * 60.00115 * 15 13 12 42 42 H 0.96999 * 120.00206 * 179.97438 * 20 19 17 43 43 H 0.96705 * 113.99936 * 177.17012 * 27 25 10 44 44 H 1.08998 * 109.92052 * 333.51215 * 28 8 7 45 45 H 1.08998 * 109.91741 * 94.60937 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 8 3.9658 0.5792 -1.2201 7 6 4.1573 2.5769 0.1265 8 7 5.6185 2.4544 0.2136 9 6 6.2628 3.7919 0.2622 10 6 7.6571 3.4920 0.8678 11 1 8.3395 3.1177 0.1047 12 7 8.2091 4.6851 1.5141 13 6 8.9917 5.5298 0.8138 14 8 9.2386 5.3024 -0.3517 15 6 9.5591 6.7575 1.4785 16 16 10.5589 7.6818 0.2860 17 6 11.0826 9.0237 1.3007 18 1 10.7679 9.0754 2.3325 19 6 11.9006 10.0138 0.7741 20 7 12.2846 9.9505 -0.4833 21 14 12.4564 11.4361 1.8501 22 1 11.8910 11.2755 3.2139 23 1 13.9393 11.4487 1.9268 24 1 11.9801 12.7151 1.2648 25 6 7.3511 2.3953 1.9136 26 1 8.1412 1.6444 1.9165 27 8 7.2105 2.9741 3.2125 28 6 6.0194 1.7682 1.4609 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8899 33 1 1.6885 1.8463 0.8900 34 1 3.7191 1.0746 -2.0132 35 1 3.8940 3.1726 -0.7477 36 1 3.7791 3.0638 1.0253 37 1 6.3603 4.2086 -0.7402 38 1 5.7002 4.4666 0.9074 39 1 8.0113 4.8672 2.4461 40 1 8.7440 7.3876 1.8344 41 1 10.1823 6.4590 2.3216 42 1 12.8559 10.6427 -0.8513 43 1 6.9750 2.3390 3.9027 44 1 5.2592 1.9173 2.2276 45 1 6.1524 0.7029 1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219216646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:48 Heat of formation + Delta-G solvation = -166.989009 kcal Electronic energy + Delta-G solvation = -26369.591608 eV Core-core repulsion = 22320.933455 eV Total energy + Delta-G solvation = -4048.658153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34314 -39.05745 -38.35688 -37.06971 -35.83113 -34.07617 -32.41408 -31.68677 -29.95773 -29.08448 -27.94210 -26.87339 -25.47127 -24.89122 -22.55759 -21.56606 -20.90422 -20.27217 -18.01319 -17.76249 -17.46173 -16.91185 -16.54206 -16.43788 -16.05043 -15.81025 -15.42283 -15.21729 -14.79328 -14.76692 -14.45648 -14.39575 -13.93467 -13.77867 -13.66915 -13.10005 -12.88268 -12.68961 -12.55585 -12.41771 -12.12539 -12.06261 -11.82471 -11.55585 -11.28477 -11.13612 -11.05985 -11.00083 -10.73981 -10.46545 -10.36698 -10.20392 -9.78702 -9.39940 -9.06342 -8.88945 -8.73970 -8.20930 -6.47816 -6.20312 -3.90422 2.85506 3.07091 3.12134 3.22479 3.27973 3.32425 3.54515 3.81045 3.95164 4.09679 4.19993 4.21894 4.30498 4.52826 4.56439 4.67751 4.70321 4.80354 4.82554 4.89565 4.93262 5.02863 5.11458 5.13238 5.14948 5.19492 5.29149 5.31287 5.48183 5.57783 5.63792 5.80745 5.90308 5.94135 6.18043 6.38734 6.50844 6.64670 6.66026 7.24867 7.39003 7.61629 7.82474 8.37150 8.65640 9.25204 10.87177 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.001875 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.760683 B =14932.014235 C =15184.899358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.028 3.972 4 C 0.117 3.883 5 H 0.104 0.896 6 O -0.539 6.539 7 C 0.017 3.983 8 N -0.498 5.498 9 C 0.024 3.976 10 C 0.156 3.844 11 H 0.114 0.886 12 N -0.721 5.721 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.086 3.914 26 H 0.077 0.923 27 O -0.561 6.561 28 C 0.003 3.997 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.373 0.627 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.408 0.592 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.383 0.617 44 H 0.055 0.945 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.567 -19.506 6.072 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.050 4.050 4 C 0.056 3.944 5 H 0.121 0.879 6 O -0.343 6.343 7 C -0.112 4.112 8 N -0.222 5.222 9 C -0.105 4.105 10 C 0.049 3.951 11 H 0.131 0.869 12 N -0.377 5.377 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.026 3.974 26 H 0.095 0.905 27 O -0.367 6.367 28 C -0.125 4.125 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.244 0.756 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.231 0.769 44 H 0.074 0.926 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.376 -20.163 3.617 29.607 hybrid contribution -1.117 1.917 3.177 3.875 sum -22.493 -18.246 6.795 29.749 Atomic orbital electron populations 1.22783 0.80963 1.02977 0.99966 1.87952 1.19635 1.26990 1.95362 1.23297 0.95126 0.85555 1.00998 1.21830 0.89541 0.93481 0.89513 0.87863 1.86655 1.80894 1.51927 1.14799 1.22925 0.88967 0.97079 1.02227 1.64696 1.06896 1.16170 1.34431 1.23723 0.94454 0.89968 1.02368 1.21776 0.94662 0.84945 0.93758 0.86863 1.45763 1.52005 1.24243 1.15658 1.20377 0.77294 0.83747 0.86769 1.90704 1.58234 1.74003 1.16309 1.23518 1.04040 0.97507 1.05209 1.85380 1.59646 1.24473 1.13831 1.22921 1.36205 1.09831 0.99366 0.90878 1.24990 0.95271 0.97934 0.95397 1.70026 1.33576 1.33937 1.12754 0.86119 0.78443 0.80971 0.79968 1.19635 1.20564 1.20594 1.22949 0.95987 0.95097 0.83359 0.90501 1.86383 1.93060 1.39718 1.17565 1.23730 0.96615 1.00430 0.91757 0.94104 0.94002 0.89418 0.92727 0.92538 0.78034 0.89714 0.93463 0.88778 0.92942 0.75579 0.89276 0.89190 0.92253 0.76909 0.92633 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.25 10.67 -40.08 -0.43 -3.68 16 3 C 0.03 0.18 5.57 37.16 0.21 0.39 16 4 C 0.12 0.87 3.22 -26.73 -0.09 0.78 16 5 H 0.10 0.84 7.24 -51.93 -0.38 0.47 16 6 O -0.54 -5.01 13.23 -40.08 -0.53 -5.54 16 7 C 0.02 0.13 4.38 -3.83 -0.02 0.11 16 8 N -0.50 -4.72 5.22 -230.45 -1.20 -5.92 16 9 C 0.02 0.27 6.24 -1.90 -0.01 0.26 16 10 C 0.16 1.93 3.38 -66.07 -0.22 1.71 16 11 H 0.11 1.63 7.55 -51.93 -0.39 1.23 16 12 N -0.72 -10.28 5.10 -52.01 -0.27 -10.54 16 13 C 0.53 10.12 7.85 -10.98 -0.09 10.03 16 14 O -0.52 -11.78 15.51 5.55 0.09 -11.70 16 15 C -0.15 -3.14 6.16 36.00 0.22 -2.91 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.09 0.77 4.30 -25.37 -0.11 0.66 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 O -0.56 -4.51 11.64 -35.23 -0.41 -4.92 16 28 C 0.00 0.03 5.35 -2.76 -0.01 0.01 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.37 2.29 9.05 45.56 0.41 2.70 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.05 0.32 7.94 -51.93 -0.41 -0.09 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.59 8.02 -51.93 -0.42 0.18 16 39 H 0.41 5.16 7.24 -40.82 -0.30 4.87 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.38 1.42 9.11 45.56 0.41 1.83 16 44 H 0.06 0.38 7.46 -51.93 -0.39 -0.01 16 45 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -36.98 387.74 -7.86 -44.84 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.65 Total: 5.28 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 1.19 Total: -0.77 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.74 Total: -42.02 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.28 Total: -25.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.98 -7.86 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.147 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds