Wall clock time and date at job start Tue Mar 31 2020 17:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00344 * 2 1 4 4 C 1.53000 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46843 * 305.00119 * 4 3 2 6 6 O 1.42897 * 109.47112 * 65.00233 * 4 3 2 7 7 C 1.53002 * 109.47266 * 185.00408 * 4 3 2 8 8 N 1.46894 * 109.46983 * 176.40871 * 7 4 3 9 9 C 1.48535 * 110.99901 * 176.89879 * 8 7 4 10 10 C 1.54939 * 103.22821 * 159.71550 * 9 8 7 11 11 H 1.09004 * 110.86903 * 81.01896 * 10 9 8 12 12 N 1.46493 * 110.72666 * 204.22798 * 10 9 8 13 13 C 1.34781 * 120.00221 * 268.50375 * 12 10 9 14 14 O 1.21285 * 120.00003 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00323 * 179.97438 * 13 12 10 16 16 S 1.80993 * 109.47407 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00050 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99657 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00351 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47143 * 120.00397 * 21 19 17 24 24 H 1.48502 * 109.47048 * 240.00396 * 21 19 17 25 25 C 1.54594 * 102.92117 * 322.58901 * 10 9 8 26 26 H 1.09005 * 110.30445 * 140.86990 * 25 10 9 27 27 O 1.42898 * 110.30654 * 263.03699 * 25 10 9 28 28 C 1.47896 * 110.99853 * 294.29373 * 8 7 4 29 29 H 1.09002 * 109.47259 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.47326 * 59.99886 * 1 2 3 31 31 H 1.09002 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47545 * 300.00245 * 3 2 1 33 33 H 1.09004 * 109.46814 * 59.99739 * 3 2 1 34 34 H 0.96707 * 114.00231 * 59.99553 * 6 4 3 35 35 H 1.09012 * 109.46400 * 296.40658 * 7 4 3 36 36 H 1.08999 * 109.47112 * 56.40078 * 7 4 3 37 37 H 1.08993 * 110.67104 * 278.15699 * 9 8 7 38 38 H 1.09003 * 110.66457 * 41.28406 * 9 8 7 39 39 H 0.96998 * 120.00175 * 88.49977 * 12 10 9 40 40 H 1.09000 * 109.47086 * 300.00676 * 15 13 12 41 41 H 1.09006 * 109.46682 * 60.00115 * 15 13 12 42 42 H 0.96999 * 120.00206 * 179.97438 * 20 19 17 43 43 H 0.96705 * 113.99936 * 177.17012 * 27 25 10 44 44 H 1.08998 * 109.92052 * 333.51215 * 28 8 7 45 45 H 1.08998 * 109.91741 * 94.60937 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 8 3.9658 0.5792 -1.2201 7 6 4.1573 2.5769 0.1265 8 7 5.6185 2.4544 0.2136 9 6 6.2628 3.7919 0.2622 10 6 7.6571 3.4920 0.8678 11 1 8.3395 3.1177 0.1047 12 7 8.2091 4.6851 1.5141 13 6 8.9917 5.5298 0.8138 14 8 9.2386 5.3024 -0.3517 15 6 9.5591 6.7575 1.4785 16 16 10.5589 7.6818 0.2860 17 6 11.0826 9.0237 1.3007 18 1 10.7679 9.0754 2.3325 19 6 11.9006 10.0138 0.7741 20 7 12.2846 9.9505 -0.4833 21 14 12.4564 11.4361 1.8501 22 1 11.8910 11.2755 3.2139 23 1 13.9393 11.4487 1.9268 24 1 11.9801 12.7151 1.2648 25 6 7.3511 2.3953 1.9136 26 1 8.1412 1.6444 1.9165 27 8 7.2105 2.9741 3.2125 28 6 6.0194 1.7682 1.4609 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8899 33 1 1.6885 1.8463 0.8900 34 1 3.7191 1.0746 -2.0132 35 1 3.8940 3.1726 -0.7477 36 1 3.7791 3.0638 1.0253 37 1 6.3603 4.2086 -0.7402 38 1 5.7002 4.4666 0.9074 39 1 8.0113 4.8672 2.4461 40 1 8.7440 7.3876 1.8344 41 1 10.1823 6.4590 2.3216 42 1 12.8559 10.6427 -0.8513 43 1 6.9750 2.3390 3.9027 44 1 5.2592 1.9173 2.2276 45 1 6.1524 0.7029 1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:47 Heat of formation + Delta-G solvation = -201.740967 kcal Electronic energy + Delta-G solvation = -26371.098566 eV Core-core repulsion = 22320.933455 eV Total energy + Delta-G solvation = -4050.165111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29916 -40.06181 -39.21312 -37.68265 -36.49719 -35.30573 -34.58361 -32.53949 -31.12408 -29.88594 -28.91750 -27.69874 -27.40359 -25.52941 -23.18533 -22.53501 -21.72980 -21.50677 -19.86805 -18.66918 -18.27344 -17.66097 -17.45323 -17.16176 -17.00425 -16.88174 -16.63013 -16.45041 -16.08269 -15.86222 -15.66681 -15.24306 -15.01830 -14.71268 -14.58026 -14.37534 -14.19210 -13.81487 -13.47029 -13.21959 -13.15512 -13.05592 -12.91401 -12.67526 -12.59129 -12.52751 -12.44934 -12.08570 -11.72935 -11.69241 -11.15777 -11.10719 -11.02674 -10.94180 -10.68179 -10.27557 -10.11550 -9.47839 -8.66503 -8.34685 -6.12706 1.25993 1.41569 1.46177 1.57744 1.58056 2.10478 2.27350 2.54414 2.99479 3.06509 3.13107 3.34758 3.44187 3.55580 3.60664 3.93985 3.98362 4.01958 4.04792 4.09534 4.18193 4.28094 4.30112 4.40579 4.42483 4.50126 4.51613 4.53889 4.57446 4.61724 4.81554 4.84621 4.85373 4.94131 5.03424 5.36622 5.42369 5.72135 5.87350 6.18362 6.20257 6.52064 6.81951 6.88912 7.06692 7.25393 8.74820 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.001875 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.760683 B =14932.014235 C =15184.899358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.029 3.971 4 C 0.121 3.879 5 H 0.097 0.903 6 O -0.563 6.563 7 C 0.020 3.980 8 N -0.510 5.510 9 C 0.033 3.967 10 C 0.143 3.857 11 H 0.089 0.911 12 N -0.696 5.696 13 C 0.534 3.466 14 O -0.563 6.563 15 C -0.129 4.129 16 S -0.147 6.147 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.100 3.900 26 H 0.086 0.914 27 O -0.570 6.570 28 C 0.009 3.991 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.384 0.616 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.420 0.580 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.404 0.596 44 H 0.074 0.926 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.156 -19.695 8.710 32.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.048 4.048 4 C 0.062 3.938 5 H 0.114 0.886 6 O -0.369 6.369 7 C -0.108 4.108 8 N -0.235 5.235 9 C -0.096 4.096 10 C 0.037 3.963 11 H 0.107 0.893 12 N -0.351 5.351 13 C 0.320 3.680 14 O -0.441 6.441 15 C -0.280 4.280 16 S 0.080 5.920 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.199 1.199 25 C 0.040 3.960 26 H 0.104 0.896 27 O -0.380 6.380 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.258 0.742 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.257 0.743 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.016 -20.394 6.307 31.392 hybrid contribution -0.728 1.844 2.384 3.100 sum -23.744 -18.550 8.691 31.360 Atomic orbital electron populations 1.22932 0.79569 1.03748 1.00886 1.87902 1.21299 1.28223 1.95593 1.23310 0.94136 0.85128 1.02244 1.21794 0.90394 0.93002 0.88645 0.88551 1.86609 1.81383 1.52971 1.15925 1.22931 0.87570 0.97307 1.03008 1.64659 1.08289 1.14850 1.35716 1.23485 0.94024 0.91143 1.00948 1.21920 0.94588 0.84977 0.94813 0.89299 1.45488 1.50103 1.23681 1.15788 1.20112 0.77769 0.83863 0.86212 1.90695 1.60224 1.75004 1.18189 1.23354 1.03621 0.97595 1.03418 1.85552 1.61905 1.26378 1.18200 1.23249 1.36506 1.10092 0.99663 0.89961 1.26126 0.95085 1.01039 0.96857 1.70186 1.34408 1.35217 1.14936 0.84897 0.78018 0.76701 0.78264 1.18087 1.19891 1.19881 1.22738 0.96849 0.93377 0.83048 0.89627 1.86314 1.93200 1.40877 1.17595 1.23733 0.96408 1.00291 0.91486 0.92987 0.93233 0.88858 0.91639 0.91058 0.76780 0.89397 0.92161 0.91113 0.92548 0.74175 0.87362 0.87405 0.91969 0.74334 0.90784 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.45 10.67 -144.35 -1.54 -7.99 16 3 C 0.03 0.32 5.57 71.98 0.40 0.72 16 4 C 0.12 1.63 3.22 30.60 0.10 1.72 16 5 H 0.10 1.41 7.24 -2.39 -0.02 1.39 16 6 O -0.56 -10.02 13.23 -144.35 -1.91 -11.93 16 7 C 0.02 0.26 4.38 86.31 0.38 0.64 16 8 N -0.51 -9.02 5.22 -883.02 -4.61 -13.64 16 9 C 0.03 0.73 6.24 86.65 0.54 1.27 16 10 C 0.14 3.47 3.38 46.20 0.16 3.63 16 11 H 0.09 2.63 7.55 -2.38 -0.02 2.61 16 12 N -0.70 -19.10 5.10 -436.84 -2.23 -21.33 16 13 C 0.53 20.38 7.85 87.66 0.69 21.07 16 14 O -0.56 -26.52 15.51 -3.05 -0.05 -26.56 16 15 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 16 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 17 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 21 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.10 1.57 4.30 31.47 0.14 1.70 16 26 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 27 O -0.57 -7.34 11.64 -148.98 -1.73 -9.07 16 28 C 0.01 0.12 5.35 86.45 0.46 0.58 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.38 4.50 9.05 -74.05 -0.67 3.83 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 0.65 7.94 -2.39 -0.02 0.63 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.19 8.02 -2.39 -0.02 1.17 16 39 H 0.42 9.67 7.24 -92.71 -0.67 8.99 16 40 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 41 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.40 1.47 9.11 -74.05 -0.67 0.80 16 44 H 0.07 0.74 7.46 -2.39 -0.02 0.73 16 45 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16 Total: -1.00 -82.16 387.74 -6.26 -88.42 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.99 Total: 23.33 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.66 Total: -1.67 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -6.56 Total: -90.94 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -5.23 Total: -55.55 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -82.16 -6.26 -88.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.320 kcal (2) G-P(sol) polarization free energy of solvation -82.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds