Wall clock time and date at job start Tue Mar 31 2020 17:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00033 * 2 1 4 4 C 1.53003 * 109.47369 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46659 * 65.00212 * 4 3 2 6 6 C 1.34781 * 119.99826 * 269.99774 * 5 4 3 7 7 O 1.21585 * 120.00226 * 184.87347 * 6 5 4 8 8 N 1.34773 * 119.99878 * 4.87767 * 6 5 4 9 9 C 1.46502 * 119.99915 * 184.94539 * 8 6 5 10 10 C 1.52997 * 109.47231 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47193 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99786 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99791 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00430 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99910 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46856 * 59.99662 * 15 13 11 17 17 H 1.48493 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46775 * 299.99850 * 15 13 11 19 19 C 1.46500 * 120.00259 * 90.00292 * 5 4 3 20 20 H 1.09000 * 110.04855 * 357.29434 * 19 5 4 21 21 C 1.53879 * 110.02697 * 118.70171 * 19 5 4 22 22 C 1.54171 * 108.70022 * 166.47312 * 21 19 5 23 23 S 1.82909 * 105.08795 * 332.08955 * 22 21 19 24 24 O 1.42097 * 109.35380 * 115.52158 * 23 22 21 25 25 O 1.42098 * 109.35333 * 248.59371 * 23 22 21 26 26 C 1.55043 * 110.02770 * 235.89145 * 19 5 4 27 27 H 1.08998 * 109.46986 * 59.99845 * 1 2 3 28 28 H 1.08992 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47220 * 300.00108 * 1 2 3 30 30 H 1.09003 * 109.47447 * 59.99915 * 3 2 1 31 31 H 1.09000 * 109.47535 * 299.99721 * 3 2 1 32 32 H 1.09000 * 109.47366 * 305.00652 * 4 3 2 33 33 H 1.08999 * 109.47508 * 184.99888 * 4 3 2 34 34 H 0.97005 * 120.00330 * 4.94705 * 8 6 5 35 35 H 1.09007 * 109.47230 * 300.00011 * 9 8 6 36 36 H 1.09003 * 109.47156 * 59.99864 * 9 8 6 37 37 H 1.09000 * 109.46982 * 299.99694 * 10 9 8 38 38 H 1.09003 * 109.47388 * 59.99729 * 10 9 8 39 39 H 0.97000 * 120.00276 * 179.97438 * 14 13 11 40 40 H 1.08994 * 109.64610 * 46.61998 * 21 19 5 41 41 H 1.08999 * 109.64676 * 286.32416 * 21 19 5 42 42 H 1.08996 * 110.31806 * 90.99356 * 22 21 19 43 43 H 1.08996 * 110.31423 * 213.18495 * 22 21 19 44 44 H 1.09006 * 110.78965 * 80.00577 * 26 19 5 45 45 H 1.09002 * 110.95649 * 316.62056 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0959 -0.7760 -1.3332 7 8 4.5459 -1.2855 -2.3412 8 7 3.7162 -1.5511 -0.2981 9 6 3.9454 -2.9973 -0.3433 10 6 3.4251 -3.6367 0.9456 11 6 3.6615 -5.1244 0.8994 12 1 4.1351 -5.5693 0.0368 13 6 3.2732 -5.9173 1.9584 14 7 2.6969 -5.3754 3.0090 15 14 3.5655 -7.7615 1.9008 16 1 5.0203 -8.0280 1.7675 17 1 3.0617 -8.3818 3.1524 18 1 2.8475 -8.3403 0.7370 19 6 4.2882 1.3999 -2.4131 20 1 4.0917 2.4471 -2.1836 21 6 5.7623 1.2158 -2.8145 22 6 5.9729 1.8247 -4.2152 23 16 4.3470 1.6900 -5.0422 24 8 3.8410 2.9923 -5.3010 25 8 4.4323 0.7413 -6.0967 26 6 3.4380 0.9545 -3.6307 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0902 34 1 3.2911 -1.1514 0.4768 35 1 3.4184 -3.4223 -1.1977 36 1 5.0133 -3.1931 -0.4411 37 1 3.9517 -3.2119 1.8002 38 1 2.3572 -3.4410 1.0430 39 1 2.4234 -5.9333 3.7539 40 1 6.0063 0.1538 -2.8361 41 1 6.4043 1.7228 -2.0942 42 1 6.2701 2.8701 -4.1326 43 1 6.7251 1.2587 -4.7646 44 1 2.4284 1.3606 -3.5670 45 1 3.4118 -0.1322 -3.7114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254631020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:49 Heat of formation + Delta-G solvation = -137.222332 kcal Electronic energy + Delta-G solvation = -28260.713526 eV Core-core repulsion = 24213.346153 eV Total energy + Delta-G solvation = -4047.367373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.42589 -37.91430 -37.20418 -36.85435 -36.13821 -34.84507 -34.22934 -32.64681 -30.34468 -29.73682 -28.79259 -26.37000 -25.48975 -24.38264 -23.11588 -22.23976 -20.80905 -19.53562 -19.00357 -18.00767 -17.24033 -16.66752 -16.51611 -16.26818 -16.10539 -15.69718 -15.46523 -15.34862 -14.73653 -14.60350 -14.49773 -14.30332 -13.99206 -13.39235 -13.25297 -12.91559 -12.91014 -12.74632 -12.34585 -12.25158 -12.18552 -12.14975 -12.05442 -11.90861 -11.51159 -11.30591 -11.10589 -10.99632 -10.90161 -10.62801 -10.55872 -10.24399 -9.80348 -9.75532 -9.47964 -9.22522 -8.86227 -8.44426 -8.16018 -6.06719 -4.09067 -0.13275 2.28571 2.74362 3.32534 3.36142 3.37210 3.39856 3.49382 3.66418 3.80587 4.14403 4.25079 4.40390 4.43719 4.52580 4.65224 4.65837 4.76636 4.83984 5.05633 5.12956 5.16226 5.28183 5.30279 5.33114 5.41375 5.47432 5.54561 5.72282 5.74859 5.92331 6.30860 6.44283 6.46941 6.82198 7.02428 7.06718 7.11564 7.59667 7.69009 7.92947 8.28903 8.41457 8.94099 9.00020 9.55337 11.04798 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.003062 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.446904 B = 9141.366840 C =10148.424594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.035 3.965 4 C 0.109 3.891 5 N -0.621 5.621 6 C 0.709 3.291 7 O -0.596 6.596 8 N -0.722 5.722 9 C 0.139 3.861 10 C 0.016 3.984 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.177 3.823 20 H 0.106 0.894 21 C -0.137 4.137 22 C -0.585 4.585 23 S 2.390 3.610 24 O -0.945 6.945 25 O -0.935 6.935 26 C -0.605 4.605 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.400 0.600 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 20.928 -6.709 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.297 6.297 3 C -0.044 4.044 4 C -0.015 4.015 5 N -0.358 5.358 6 C 0.410 3.590 7 O -0.476 6.476 8 N -0.376 5.376 9 C 0.016 3.984 10 C -0.021 4.021 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C 0.070 3.930 20 H 0.124 0.876 21 C -0.176 4.176 22 C -0.715 4.715 23 S 2.574 3.426 24 O -0.942 6.942 25 O -0.932 6.932 26 C -0.736 4.736 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.237 0.763 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.069 20.533 -8.154 22.119 hybrid contribution -0.203 -0.712 1.330 1.522 sum 0.866 19.821 -6.824 20.981 Atomic orbital electron populations 1.22724 0.80649 1.03310 0.99346 1.87949 1.20013 1.26452 1.95285 1.23120 0.94432 0.86190 1.00643 1.21705 0.92505 1.00061 0.87214 1.46918 1.72227 1.04808 1.11849 1.15896 0.78752 0.80174 0.84129 1.90800 1.53084 1.72771 1.30974 1.45650 1.62978 1.09083 1.19929 1.21582 0.99874 0.75723 1.01206 1.19278 0.96850 0.95380 0.90640 1.21032 1.39749 0.91852 1.03250 0.92339 1.24980 0.95021 0.98869 0.95355 1.69948 1.40818 1.35712 1.06890 0.86595 0.78683 0.85085 0.77289 1.20141 1.21315 1.20123 1.21331 0.92307 0.94687 0.84708 0.87567 1.22448 0.96098 1.05730 0.93353 1.30387 1.21986 1.10130 1.09022 1.08923 0.79931 0.75735 0.78052 1.93602 1.78204 1.38007 1.84359 1.93625 1.85553 1.62714 1.51290 1.31128 1.10966 1.16281 1.15189 0.94509 0.89193 0.94143 0.92218 0.93004 0.89081 0.88442 0.76347 0.92802 0.93011 0.96240 0.95871 0.92884 0.86757 0.89159 0.84800 0.84238 0.84844 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -4.69 8.31 -35.23 -0.29 -4.98 16 3 C 0.03 0.30 6.28 37.16 0.23 0.53 16 4 C 0.11 0.92 5.67 -4.04 -0.02 0.90 16 5 N -0.62 -7.06 2.46 -170.04 -0.42 -7.47 16 6 C 0.71 11.50 7.27 -86.92 -0.63 10.87 16 7 O -0.60 -11.27 12.49 5.29 0.07 -11.20 16 8 N -0.72 -12.69 4.84 -65.22 -0.32 -13.00 16 9 C 0.14 2.97 5.62 -4.04 -0.02 2.94 16 10 C 0.02 0.40 5.09 -27.88 -0.14 0.26 16 11 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 15 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.18 1.60 3.01 -66.39 -0.20 1.40 16 20 H 0.11 0.57 7.85 -51.93 -0.41 0.16 16 21 C -0.14 -1.21 5.78 -25.66 -0.15 -1.36 16 22 C -0.58 -4.23 7.26 37.77 0.27 -3.96 16 23 S 2.39 23.97 6.10 -107.50 -0.66 23.31 16 24 O -0.94 -11.44 18.14 -57.73 -1.05 -12.49 16 25 O -0.93 -13.48 18.15 -57.73 -1.05 -14.53 16 26 C -0.60 -6.16 6.59 38.24 0.25 -5.91 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.85 6.66 -51.93 -0.35 0.50 16 33 H 0.10 0.47 7.96 -51.93 -0.41 0.06 16 34 H 0.40 6.51 4.97 -40.82 -0.20 6.31 16 35 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.11 1.38 5.95 -51.93 -0.31 1.07 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.16 2.17 5.97 -51.93 -0.31 1.86 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -37.34 374.03 -9.09 -46.43 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.03 Total: 3.22 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.29 Total: -5.99 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.00 Total: -45.74 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.32 Total: -43.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 23.97 SS G_CDS: -0.66 Total: 23.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.34 -9.09 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254631020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.792 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds