Wall clock time and date at job start Tue Mar 31 2020 17:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00033 * 2 1 4 4 C 1.53003 * 109.47369 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46659 * 65.00212 * 4 3 2 6 6 C 1.34781 * 119.99826 * 269.99774 * 5 4 3 7 7 O 1.21585 * 120.00226 * 184.87347 * 6 5 4 8 8 N 1.34773 * 119.99878 * 4.87767 * 6 5 4 9 9 C 1.46502 * 119.99915 * 184.94539 * 8 6 5 10 10 C 1.52997 * 109.47231 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47193 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99786 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99791 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00430 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99910 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46856 * 59.99662 * 15 13 11 17 17 H 1.48493 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46775 * 299.99850 * 15 13 11 19 19 C 1.46500 * 120.00259 * 90.00292 * 5 4 3 20 20 H 1.09000 * 110.04855 * 357.29434 * 19 5 4 21 21 C 1.53879 * 110.02697 * 118.70171 * 19 5 4 22 22 C 1.54171 * 108.70022 * 166.47312 * 21 19 5 23 23 S 1.82909 * 105.08795 * 332.08955 * 22 21 19 24 24 O 1.42097 * 109.35380 * 115.52158 * 23 22 21 25 25 O 1.42098 * 109.35333 * 248.59371 * 23 22 21 26 26 C 1.55043 * 110.02770 * 235.89145 * 19 5 4 27 27 H 1.08998 * 109.46986 * 59.99845 * 1 2 3 28 28 H 1.08992 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47220 * 300.00108 * 1 2 3 30 30 H 1.09003 * 109.47447 * 59.99915 * 3 2 1 31 31 H 1.09000 * 109.47535 * 299.99721 * 3 2 1 32 32 H 1.09000 * 109.47366 * 305.00652 * 4 3 2 33 33 H 1.08999 * 109.47508 * 184.99888 * 4 3 2 34 34 H 0.97005 * 120.00330 * 4.94705 * 8 6 5 35 35 H 1.09007 * 109.47230 * 300.00011 * 9 8 6 36 36 H 1.09003 * 109.47156 * 59.99864 * 9 8 6 37 37 H 1.09000 * 109.46982 * 299.99694 * 10 9 8 38 38 H 1.09003 * 109.47388 * 59.99729 * 10 9 8 39 39 H 0.97000 * 120.00276 * 179.97438 * 14 13 11 40 40 H 1.08994 * 109.64610 * 46.61998 * 21 19 5 41 41 H 1.08999 * 109.64676 * 286.32416 * 21 19 5 42 42 H 1.08996 * 110.31806 * 90.99356 * 22 21 19 43 43 H 1.08996 * 110.31423 * 213.18495 * 22 21 19 44 44 H 1.09006 * 110.78965 * 80.00577 * 26 19 5 45 45 H 1.09002 * 110.95649 * 316.62056 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0959 -0.7760 -1.3332 7 8 4.5459 -1.2855 -2.3412 8 7 3.7162 -1.5511 -0.2981 9 6 3.9454 -2.9973 -0.3433 10 6 3.4251 -3.6367 0.9456 11 6 3.6615 -5.1244 0.8994 12 1 4.1351 -5.5693 0.0368 13 6 3.2732 -5.9173 1.9584 14 7 2.6969 -5.3754 3.0090 15 14 3.5655 -7.7615 1.9008 16 1 5.0203 -8.0280 1.7675 17 1 3.0617 -8.3818 3.1524 18 1 2.8475 -8.3403 0.7370 19 6 4.2882 1.3999 -2.4131 20 1 4.0917 2.4471 -2.1836 21 6 5.7623 1.2158 -2.8145 22 6 5.9729 1.8247 -4.2152 23 16 4.3470 1.6900 -5.0422 24 8 3.8410 2.9923 -5.3010 25 8 4.4323 0.7413 -6.0967 26 6 3.4380 0.9545 -3.6307 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0902 34 1 3.2911 -1.1514 0.4768 35 1 3.4184 -3.4223 -1.1977 36 1 5.0133 -3.1931 -0.4411 37 1 3.9517 -3.2119 1.8002 38 1 2.3572 -3.4410 1.0430 39 1 2.4234 -5.9333 3.7539 40 1 6.0063 0.1538 -2.8361 41 1 6.4043 1.7228 -2.0942 42 1 6.2701 2.8701 -4.1326 43 1 6.7251 1.2587 -4.7646 44 1 2.4284 1.3606 -3.5670 45 1 3.4118 -0.1322 -3.7114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254631020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:47 Heat of formation + Delta-G solvation = -166.784530 kcal Electronic energy + Delta-G solvation = -28261.995439 eV Core-core repulsion = 24213.346153 eV Total energy + Delta-G solvation = -4048.649286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.51396 -38.77811 -38.13771 -37.87596 -37.07059 -36.32098 -35.39840 -34.42534 -31.42748 -31.02042 -29.81850 -27.23066 -26.86289 -25.66181 -23.96920 -23.29990 -22.42424 -20.75884 -19.83164 -18.98517 -18.45400 -18.06242 -17.47741 -17.28307 -16.98924 -16.67977 -16.54409 -16.45385 -16.29425 -15.81115 -15.44072 -15.29921 -15.09934 -14.93099 -14.38258 -14.25064 -13.69885 -13.60959 -13.54748 -13.26504 -13.17493 -13.13734 -12.99893 -12.85305 -12.80484 -12.66125 -12.51227 -12.30225 -12.15110 -12.02706 -11.71738 -11.58144 -11.42229 -11.29330 -10.79452 -10.57569 -10.54881 -10.01677 -9.47639 -8.21819 -6.32087 -0.91714 1.41938 1.44627 1.48281 1.52786 1.79508 2.22100 2.41685 2.66201 2.92845 2.99181 3.12547 3.18280 3.47827 3.66410 3.77078 3.96334 4.05926 4.13231 4.16560 4.38521 4.48643 4.51965 4.55863 4.56787 4.57281 4.64386 4.76932 4.85928 4.89303 4.91204 4.91545 4.96257 5.18618 5.37335 5.60244 5.63577 5.66340 5.83648 5.96199 6.20443 6.32308 6.80967 7.12082 7.37053 7.69691 8.89839 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.003062 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.446904 B = 9141.366840 C =10148.424594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.416 6.416 3 C 0.028 3.972 4 C 0.101 3.899 5 N -0.609 5.609 6 C 0.705 3.295 7 O -0.628 6.628 8 N -0.724 5.724 9 C 0.161 3.839 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.270 1.270 19 C 0.167 3.833 20 H 0.161 0.839 21 C -0.139 4.139 22 C -0.556 4.556 23 S 2.399 3.601 24 O -0.964 6.964 25 O -0.990 6.990 26 C -0.607 4.607 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.035 0.965 36 H 0.044 0.956 37 H 0.006 0.994 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.174 0.826 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 23.285 -6.065 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.335 6.335 3 C -0.049 4.049 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.407 3.593 7 O -0.511 6.511 8 N -0.379 5.379 9 C 0.037 3.963 10 C -0.007 4.007 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.195 1.195 19 C 0.061 3.939 20 H 0.178 0.822 21 C -0.178 4.178 22 C -0.690 4.690 23 S 2.586 3.414 24 O -0.961 6.961 25 O -0.987 6.987 26 C -0.738 4.738 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.192 0.808 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.957 22.951 -7.529 24.234 hybrid contribution -0.478 -1.356 1.161 1.848 sum 1.478 21.595 -6.368 22.563 Atomic orbital electron populations 1.22732 0.80159 1.02460 1.00771 1.87899 1.20880 1.29161 1.95585 1.23352 0.94180 0.84920 1.02442 1.22101 0.92801 1.02051 0.85138 1.46901 1.70961 1.02971 1.13669 1.16056 0.78394 0.81915 0.82979 1.90794 1.54233 1.74099 1.31937 1.45364 1.63922 1.07602 1.21045 1.21000 0.98704 0.78147 0.98488 1.19040 0.95318 0.94648 0.91715 1.21445 1.40083 0.93476 1.03506 0.92429 1.25845 0.94543 1.03743 0.94870 1.70056 1.41434 1.37514 1.07503 0.85530 0.78936 0.79184 0.77577 1.19251 1.20526 1.19538 1.21836 0.92128 0.96663 0.83234 0.82206 1.22445 0.96488 1.04027 0.94864 1.30225 1.18790 1.12721 1.07230 1.08510 0.81011 0.74353 0.77505 1.93567 1.79429 1.38265 1.84880 1.93553 1.86733 1.64146 1.54234 1.31052 1.12560 1.14024 1.16152 0.93263 0.91318 0.92451 0.89776 0.91676 0.90278 0.83372 0.75563 0.94616 0.93754 0.97601 0.97924 0.92586 0.90406 0.86068 0.80806 0.83516 0.83198 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -10.05 8.31 -148.98 -1.24 -11.29 16 3 C 0.03 0.41 6.28 71.98 0.45 0.86 16 4 C 0.10 1.37 5.67 86.38 0.49 1.86 16 5 N -0.61 -12.56 2.46 -810.15 -2.00 -14.55 16 6 C 0.70 22.97 7.27 179.05 1.30 24.27 16 7 O -0.63 -24.56 12.49 -3.98 -0.05 -24.61 16 8 N -0.72 -26.10 4.84 -478.53 -2.32 -28.42 16 9 C 0.16 7.20 5.62 86.38 0.49 7.68 16 10 C 0.03 1.57 5.09 29.85 0.15 1.72 16 11 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.01 0.50 5.46 84.66 0.46 0.96 16 14 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.17 2.50 3.01 45.99 0.14 2.64 16 20 H 0.16 0.75 7.85 -2.39 -0.02 0.73 16 21 C -0.14 -2.03 5.78 31.29 0.18 -1.85 16 22 C -0.56 -6.27 7.26 72.38 0.53 -5.74 16 23 S 2.40 45.78 6.10 -56.49 -0.34 45.44 16 24 O -0.96 -21.66 18.14 -127.47 -2.31 -23.97 16 25 O -0.99 -29.55 18.15 -127.47 -2.31 -31.86 16 26 C -0.61 -11.80 6.59 72.68 0.48 -11.32 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.31 6.66 -2.39 -0.02 1.29 16 33 H 0.15 0.54 7.96 -2.39 -0.02 0.52 16 34 H 0.41 13.50 4.97 -92.70 -0.46 13.04 16 35 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.08 1.81 5.95 -2.39 -0.01 1.80 16 41 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.15 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.13 3.56 5.97 -2.39 -0.01 3.55 16 Total: -1.00 -85.18 374.03 -1.58 -86.75 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.53 Total: 18.53 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.15 Total: -7.75 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.03 Total: -97.21 kcal Atomic # 8 Polarization: -85.82 SS G_CDS: -5.91 Total: -91.73 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.34 Total: 45.44 kcal Total: -85.18 -1.58 -86.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254631020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.030 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds